These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5281#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1052 fasta sequence [GCCAGNAATTCGGCACGAGGTCTCAGGCCACGAACATGATCCTAATCATCGTTATGTTACAGTCGTCTGGGTGTATTCCTGCTAAAGAAGAAAACGTAATACACACATTCCCTTCCAAATCACACGATGCACAGTTTTGTGAATTCAGTGCGTCATCATCAGCCAGTGTTGATGTTGGTGATGACTCTTTGGCATCTGCTACTCTTACTGAAGTTACTAAAAAGCAATCTCTGTGCAGTTCTAAAGATATTGGTTGTTGTAGTAGTTGTCCTGTTGTTGGTAGCTCACCCAGTATCCATACAACTTCTTCAAGTTCTTCATTGGGATCATGTGCTTGTTCGAGTAAATTAAATTTCCATGATTCATCGACACAATGTCAGCAATTAGAACATGTAGTAACTGAATCTCCCTCATCCAAAAGTAATATTCTACAAGGAAGCAAAACGTCTTCCAGTAATGAACAAAATACATCACCGCCACATCAAATTAAAACAGATAATTAACTTCACCGTAGTGTTATAACCAAAAGTATCTAGTGGATTAGCTAGCTAATTTGCTTAACGTATCTTTAAAATAGTGTACACACTTGGGGTAATCTGCAAATCCTATGGACAGCTGGCTCAAACACTTGTTTTGTATCGATGATTATCTTTCCAGAACAATCAGAAATTTAACGATATACGAACTCAGTTTTTGGACGTTGAGGTGTTATGAATGTATTATACCATACACAGTAGTCTTCGGTTGTCAAGTGCTATNCAGC-AAGACATTGTTAAAATTTTATATCATACTTCCCCGCTCACTTGTTGCAGATCGTAGCTTCAGATAAAAGCTTGGAAAATTGTTTACAGATTGAAAGAGGTGGGTCCTAACTCATCCTGTTTTACACCTCTGCTTAATGTATGCATATATATATCCTGCATAAAAGTTCGGTTTTCTCTTTAACCTAATATCGCATAGATACTTTGCCCGGTGTTTTCGAGATCCTCGTATTCTGATTTCTCTATTTTTGTGTCCATACTGTTCCAACACCTATCTTATGTACAGATAGC] [+] EMBL CD081534 [GCCAGNAATTCGGCACGAGGTCTCAGGCCACGAACATGATCCTAATCATCGTTATGTTACAGTCGTCTGGGTGTATTCCTGCTAAAGAAGAAAACGTAATACACACATTCCCTTCCAAATCACACGATGCACAGTTTTGTGAATTCAGTGCGTCATCATCAGCCAGTGTTGATGTTGGTGATGACTCTTTGGCATCTGCTACTCTTACTGAAGTTACTAAAAAGCAATCTCTGTGCAGTTCTAAAGATATTGGTTGTTGTAGTAGTTGTCCTGTTGTTGGTAGCTCACCCAGTATCCATACAACTTCTTCAAGTTCTTCATTGGGATCATGTGCTTGTTCGAGTAAATTAAATTTCCATGATTCATCGACACAATGTCAGCAATTAGAACATGTAGTAACTGAATCTCCCTCATCCAAAAGTAATATTCTACAAGGAAGCAAAACGTCTTCCAGTAATGAACAAAATACATCACCGCCACATCAAATTAAAACAGATAATTAACTTCACCGTAGTGTTATAACCAAAAGTATCTAGTGGATTAGCTAGCTAATTTGCTTAACGTATCTTTAAAATAGTGTACACACTTGGGGTAATCTGCAAATCCTATGGACAGCTGGCTCAAACACTTGTTTTGTATCGATGATTATCTTTCCAGAACAATCAGAAATTTAACGATATACGAACTCAGTTTTTGGACGTTGAGGTGTTATGAATGTATTATACCATACACAGTAGTCTTCGGTTGTCAAGTGCTATNCAGC AAGACATTGTTAAAATTTTATATCATACTTCCCCGCTCACTTGTTGCAGATCGTAGCTTCAGATAAAA ] [-] EMBL CD075357 [ CACCGCCACATCAAATTAAAACAGATAATTAACTTCACCGTAGTGTTATAACCAAAAGTATCTAGTGGATTAGCTAGCTAATTTGCTTAACGTATCTTTAAAATAGTGTACACACTTGGGGTAATCTGCAAATCCTATGGACAGCTGGCTCAAACACTTGTTTTGTATCGATGATTATCTTTCCAGAACAATCAGAAATTTAACGATATACGAACTCAGTTTTTGGACGTTGAGGTGTTATGAATGTATTATACCATACACAGTAGTCTTCGGTTGTCAAGTGCTAT CAGCAAAGACATTGTTAAAATTTTATATCATACTTCCCCGCTCACTTGTTGCAGATCGTAGCTTCAGATAAAAGCTTGGAAAATTGTTTACAGATTGAAAGAGGTGGGTCCTAACTCATCCTGTTTTACACCTCTGCTTAATGTATGCATATATATATCCTGCATAAAAGTTCGGTTTTCTCTTTAACCTAATATCGCATAGATACTTTGCCCGGTGTTTTCGAGATCCTCGTATTCTGATTTCTCTATTTTTGTGTCCATACTGTTCCAACACCTATCTTATGTACAGATAGC] consensusID : consensus_5281#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [TCTATATTTATCTTTATAACAGACGTACATTAGGGCGCTTGATTAATTCACAGCCAGAAGATGATAAATGAAACAATTCCCTAGGCACAAAAATACCACAATCTAAAGTAAAAATAGCCTGAGCGGAAAGAAAGGTAAAGCAGTGTTCAATATACATAGTAAGAACACAAAGAAGAGCAACATTTCATTGTGTGGCATACATGTCCCTTTTACCCATAAGTTTGCTAATAACAAAGTGTTGTGACAAAGTCAAAATACAAAGAATTATGTTAGGATTTTAAACTACATATAAGAACTGACAACGAAGTAATATTATCTTAAAACAATTTGTCTTAATAATTTAAGTAGTTAATCTGTATGCGTACATTTTAAATAAGTAGGAAAATAAGTTACTTTTCTGCAGAAACGAAGAAATGAGCTGCGAGGTACGAAGCAGCTAATACAGTAAGTCAACAAGATGAAACAACCAACACGAAAGAATAATAATTGCTGCGATGCTTTTCTCTGTAGTAAAATTAAGTAAATCTCTTTCAATCTGTAAACAATTTTCCAAGCTTTTATCTGAAGCTACGATCTGCAACAAGTGAGCGGNGGAAGTATGATATAAAATT] [+] EMBL CD077266 [TCTATATTTATCTTTATAACAGACGTACATTAGGGCGCTTGATTAATTCACAGCCAGAAGATGATAAATGAAACAATTCCCTAGGCACAAAAATACCACAATCTAAAGTAAAAATAGCCTGAGCGGAAAGAAAGGTAAAGCAGTGTTCAATATACATAGTAAGAACACAAAGAAGAGCAACATTTCATTGTGTGGCATACATGTCCCTTTTACCCATAAGTTTGCTAATAACAAAGTGTTGTGACAAAGTCAAAATACAAAGAATTATGTTAGGATTTTAAACTACATATAAGAACTGACAACGAAGTAATATTATCTTAAAACAATTTGTCTTAATAATTTAAGTAGTTAATCTGTATGCGTACATTTTAAATAAGTAGGAAAATAAGTTACTTTTCTGCAGAAACGAAGAAATGAGCTGCGAGGTACGAAGCAGCTAATACAGTAAGTCAACAAGATGAAACAACCAACACGAAAGAATAATAATTGCTGCGATGCTTTTCTCTGTAGTAAAATTAAGTAAATCTCTTTCAATCTGTAAACAATTTTCCAAGCTTTTATCTGAAGCTACGATCTGCAACAAGTGAGCGGNGGAAGTATGATATAAAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5281#0 GCCAGNAATTCGGCACGAGGTCTCAGGCCACGAACATGATCCTAATCATCGTTATGTTAC 60 consensus_5281#1 ------------------------------------------------------------ consensus_5281#0 AGTCGTCTGGGTGTATTCCTGCTAAAGAAGAAAACGTAATACACACATTCCCTTCCAAAT 120 consensus_5281#1 ------------------------------------------------------------ consensus_5281#0 CACACGATGCACAGTTTTGTGAATTCAGTGCGTCATCATCAGCCAGTGTTGATGTTGGTG 180 consensus_5281#1 ------------------------------------------------------------ consensus_5281#0 ATGACTCTTTGGCATCTGCTACTCTTACTGAAGTTACTAAAAAGCAATCTCTGTGCAGTT 240 consensus_5281#1 ------------------------------------------------------------ consensus_5281#0 CTAAAGATATTGGTTGTTGTAGTAGTTGTCCTGTTGTTGGTAGCTCACCCAGTATCCATA 300 consensus_5281#1 ------------------------------------------------------------ consensus_5281#0 CAACTTCTTCAAGTTCTTCATTGGGATCATGTGCTTGTTCGAGTAAATTAAATTTCCATG 360 consensus_5281#1 -------TCTATATTTATCTTTATAA-CAGACGTACATTAGGGCG-------CTTGATTA 45 * * ** ** ** * ** * ** * * ** * consensus_5281#0 ATTCATCGACACAATGTCAGCAATTAGAACATG---TAGTAACTGAATCTCCCTCATCCA 417 consensus_5281#1 ATTCACAGCCAGAAGATGATAAATGAAACAATTCCCTAGGCACAAAAATACCACAATCTA 105 ***** * ** ** * * *** * * ** *** ** ** ** *** * consensus_5281#0 AA--AGTAATATTCTACAAGGAAGCAAAACGTCTTCCAGTAATGAACAAAATACATCACC 475 consensus_5281#1 AAGTAAAAATAGCCTGAGCGGAAAGAAAGG----TAAAGCAGTGTTCAATATACATAGTA 161 ** * **** ** **** *** * ** * ** *** ****** consensus_5281#0 GCCACATCAAATTAAAACAGATAATTAACTTCACCGTAGTGTTATAACCAAAAGTATCTA 535 consensus_5281#1 AGAACA-CAAAGAAGAGCAA------CATTTCATTGT-GTGGCATA--CATGTCCCTTTT 211 *** **** * * ** * **** ** *** *** ** * * consensus_5281#0 GTGGATTAGCTAGCTAATTTGCTTAACGTATCTTTAAAATAGTGTACACACTTGGGGTAA 595 consensus_5281#1 ACCCATAAGTTTGCTAA------TAACAAAGTGTTGTGACAAAGTCAAAATACAAAGAAT 265 ** ** * ***** **** * ** * * ** * * * * consensus_5281#0 TCTGCAAATCCTATGGACAGCTGGCTCAAACACTTGTTTTGTATCGATGATTATCTTTCC 655 consensus_5281#1 TATGTTAGGATTTTAAACTAC--ATATAAGAACTGACAACGAAGTAAT-ATTATCTT--- 319 * ** * * * ** * ** *** * * ** ******** consensus_5281#0 AGAACAATCAGAAATTTAACGATATACGAACTCAGTTTTTGGACGTTGAGGTGTTATGAA 715 consensus_5281#1 AAAACAATTTGT--CTTAATAATTTAAGTAGTTAATCTGTATGCGT--ACATTTTAAATA 375 * ****** * **** ** ** * * * * * * * *** * * *** * consensus_5281#0 TGTATTATACCATACACAGTAGTCTTCGGTTGTCAAGTGCTATNCAGCAAGACATTGTTA 775 consensus_5281#1 AGTAGGAAAATA-AGTTACTTTTCTGCAGAAACGAAGAAATGAGCTGCGAGGTACGAAGC 434 *** * * * * * * *** * * *** * * ** ** * consensus_5281#0 AAATTTTATATCATACTTCCCCGCTCACTTGTTGCAGATCGTAGCTTCAGATAAAAGCTT 835 consensus_5281#1 AGCTAATACAGTAAGTCAACAAGATGAAACAACCAACACGAAAGAAT--AATAATTGCTG 492 * * ** * * * * * * * * ** * **** *** consensus_5281#0 GGAAAATTGTTTACAGATTGAAAGAGGTGGGTCCTAACTCATCCTGTTTTACACCTCTGC 895 consensus_5281#1 CGATGCTTTTCTCTGTAGTAAAATTAAGTAAATCTCTTTCAATCTGTAAACAATTTTCCA 552 ** ** * * * * *** ** *** **** * * consensus_5281#0 TTAATGTATGCATATATATATCCTGCATAAAAGTTCGGTTTTCTCTTTAACCTAATATCG 955 consensus_5281#1 AGCTTTTATCTGAAGCTACGATCTGCAACAAGTGAGCGGNGGAAGTATGATATAAAATT- 611 * *** * ** ***** ** * * * * *** ** consensus_5281#0 CATAGATACTTTGCCCGGTGTTTTCGAGATCCTCGTATTCTGATTTCTCTATTTTTGTGT 1015 consensus_5281#1 ------------------------------------------------------------ consensus_5281#0 CCATACTGTTCCAACACCTATCTTATGTACAGATAGC 1052 consensus_5281#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||