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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5281#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1052 fasta sequence
[GCCAGNAATTCGGCACGAGGTCTCAGGCCACGAACATGATCCTAATCATCGTTATGTTACAGTCGTCTGGGTGTATTCCTGCTAAAGAAGAAAACGTAATACACACATTCCCTTCCAAATCACACGATGCACAGTTTTGTGAATTCAGTGCGTCATCATCAGCCAGTGTTGATGTTGGTGATGACTCTTTGGCATCTGCTACTCTTACTGAAGTTACTAAAAAGCAATCTCTGTGCAGTTCTAAAGATATTGGTTGTTGTAGTAGTTGTCCTGTTGTTGGTAGCTCACCCAGTATCCATACAACTTCTTCAAGTTCTTCATTGGGATCATGTGCTTGTTCGAGTAAATTAAATTTCCATGATTCATCGACACAATGTCAGCAATTAGAACATGTAGTAACTGAATCTCCCTCATCCAAAAGTAATATTCTACAAGGAAGCAAAACGTCTTCCAGTAATGAACAAAATACATCACCGCCACATCAAATTAAAACAGATAATTAACTTCACCGTAGTGTTATAACCAAAAGTATCTAGTGGATTAGCTAGCTAATTTGCTTAACGTATCTTTAAAATAGTGTACACACTTGGGGTAATCTGCAAATCCTATGGACAGCTGGCTCAAACACTTGTTTTGTATCGATGATTATCTTTCCAGAACAATCAGAAATTTAACGATATACGAACTCAGTTTTTGGACGTTGAGGTGTTATGAATGTATTATACCATACACAGTAGTCTTCGGTTGTCAAGTGCTATNCAGC-AAGACATTGTTAAAATTTTATATCATACTTCCCCGCTCACTTGTTGCAGATCGTAGCTTCAGATAAAAGCTTGGAAAATTGTTTACAGATTGAAAGAGGTGGGTCCTAACTCATCCTGTTTTACACCTCTGCTTAATGTATGCATATATATATCCTGCATAAAAGTTCGGTTTTCTCTTTAACCTAATATCGCATAGATACTTTGCCCGGTGTTTTCGAGATCCTCGTATTCTGATTTCTCTATTTTTGTGTCCATACTGTTCCAACACCTATCTTATGTACAGATAGC]
[+] EMBL CD081534 [GCCAGNAATTCGGCACGAGGTCTCAGGCCACGAACATGATCCTAATCATCGTTATGTTACAGTCGTCTGGGTGTATTCCTGCTAAAGAAGAAAACGTAATACACACATTCCCTTCCAAATCACACGATGCACAGTTTTGTGAATTCAGTGCGTCATCATCAGCCAGTGTTGATGTTGGTGATGACTCTTTGGCATCTGCTACTCTTACTGAAGTTACTAAAAAGCAATCTCTGTGCAGTTCTAAAGATATTGGTTGTTGTAGTAGTTGTCCTGTTGTTGGTAGCTCACCCAGTATCCATACAACTTCTTCAAGTTCTTCATTGGGATCATGTGCTTGTTCGAGTAAATTAAATTTCCATGATTCATCGACACAATGTCAGCAATTAGAACATGTAGTAACTGAATCTCCCTCATCCAAAAGTAATATTCTACAAGGAAGCAAAACGTCTTCCAGTAATGAACAAAATACATCACCGCCACATCAAATTAAAACAGATAATTAACTTCACCGTAGTGTTATAACCAAAAGTATCTAGTGGATTAGCTAGCTAATTTGCTTAACGTATCTTTAAAATAGTGTACACACTTGGGGTAATCTGCAAATCCTATGGACAGCTGGCTCAAACACTTGTTTTGTATCGATGATTATCTTTCCAGAACAATCAGAAATTTAACGATATACGAACTCAGTTTTTGGACGTTGAGGTGTTATGAATGTATTATACCATACACAGTAGTCTTCGGTTGTCAAGTGCTATNCAGC AAGACATTGTTAAAATTTTATATCATACTTCCCCGCTCACTTGTTGCAGATCGTAGCTTCAGATAAAA ]
[-] EMBL CD075357 [ CACCGCCACATCAAATTAAAACAGATAATTAACTTCACCGTAGTGTTATAACCAAAAGTATCTAGTGGATTAGCTAGCTAATTTGCTTAACGTATCTTTAAAATAGTGTACACACTTGGGGTAATCTGCAAATCCTATGGACAGCTGGCTCAAACACTTGTTTTGTATCGATGATTATCTTTCCAGAACAATCAGAAATTTAACGATATACGAACTCAGTTTTTGGACGTTGAGGTGTTATGAATGTATTATACCATACACAGTAGTCTTCGGTTGTCAAGTGCTAT CAGCAAAGACATTGTTAAAATTTTATATCATACTTCCCCGCTCACTTGTTGCAGATCGTAGCTTCAGATAAAAGCTTGGAAAATTGTTTACAGATTGAAAGAGGTGGGTCCTAACTCATCCTGTTTTACACCTCTGCTTAATGTATGCATATATATATCCTGCATAAAAGTTCGGTTTTCTCTTTAACCTAATATCGCATAGATACTTTGCCCGGTGTTTTCGAGATCCTCGTATTCTGATTTCTCTATTTTTGTGTCCATACTGTTCCAACACCTATCTTATGTACAGATAGC]
consensusID : consensus_5281#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[TCTATATTTATCTTTATAACAGACGTACATTAGGGCGCTTGATTAATTCACAGCCAGAAGATGATAAATGAAACAATTCCCTAGGCACAAAAATACCACAATCTAAAGTAAAAATAGCCTGAGCGGAAAGAAAGGTAAAGCAGTGTTCAATATACATAGTAAGAACACAAAGAAGAGCAACATTTCATTGTGTGGCATACATGTCCCTTTTACCCATAAGTTTGCTAATAACAAAGTGTTGTGACAAAGTCAAAATACAAAGAATTATGTTAGGATTTTAAACTACATATAAGAACTGACAACGAAGTAATATTATCTTAAAACAATTTGTCTTAATAATTTAAGTAGTTAATCTGTATGCGTACATTTTAAATAAGTAGGAAAATAAGTTACTTTTCTGCAGAAACGAAGAAATGAGCTGCGAGGTACGAAGCAGCTAATACAGTAAGTCAACAAGATGAAACAACCAACACGAAAGAATAATAATTGCTGCGATGCTTTTCTCTGTAGTAAAATTAAGTAAATCTCTTTCAATCTGTAAACAATTTTCCAAGCTTTTATCTGAAGCTACGATCTGCAACAAGTGAGCGGNGGAAGTATGATATAAAATT]
[+] EMBL CD077266 [TCTATATTTATCTTTATAACAGACGTACATTAGGGCGCTTGATTAATTCACAGCCAGAAGATGATAAATGAAACAATTCCCTAGGCACAAAAATACCACAATCTAAAGTAAAAATAGCCTGAGCGGAAAGAAAGGTAAAGCAGTGTTCAATATACATAGTAAGAACACAAAGAAGAGCAACATTTCATTGTGTGGCATACATGTCCCTTTTACCCATAAGTTTGCTAATAACAAAGTGTTGTGACAAAGTCAAAATACAAAGAATTATGTTAGGATTTTAAACTACATATAAGAACTGACAACGAAGTAATATTATCTTAAAACAATTTGTCTTAATAATTTAAGTAGTTAATCTGTATGCGTACATTTTAAATAAGTAGGAAAATAAGTTACTTTTCTGCAGAAACGAAGAAATGAGCTGCGAGGTACGAAGCAGCTAATACAGTAAGTCAACAAGATGAAACAACCAACACGAAAGAATAATAATTGCTGCGATGCTTTTCTCTGTAGTAAAATTAAGTAAATCTCTTTCAATCTGTAAACAATTTTCCAAGCTTTTATCTGAAGCTACGATCTGCAACAAGTGAGCGGNGGAAGTATGATATAAAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5281#0 GCCAGNAATTCGGCACGAGGTCTCAGGCCACGAACATGATCCTAATCATCGTTATGTTAC 60
consensus_5281#1 ------------------------------------------------------------
consensus_5281#0 AGTCGTCTGGGTGTATTCCTGCTAAAGAAGAAAACGTAATACACACATTCCCTTCCAAAT 120
consensus_5281#1 ------------------------------------------------------------
consensus_5281#0 CACACGATGCACAGTTTTGTGAATTCAGTGCGTCATCATCAGCCAGTGTTGATGTTGGTG 180
consensus_5281#1 ------------------------------------------------------------
consensus_5281#0 ATGACTCTTTGGCATCTGCTACTCTTACTGAAGTTACTAAAAAGCAATCTCTGTGCAGTT 240
consensus_5281#1 ------------------------------------------------------------
consensus_5281#0 CTAAAGATATTGGTTGTTGTAGTAGTTGTCCTGTTGTTGGTAGCTCACCCAGTATCCATA 300
consensus_5281#1 ------------------------------------------------------------
consensus_5281#0 CAACTTCTTCAAGTTCTTCATTGGGATCATGTGCTTGTTCGAGTAAATTAAATTTCCATG 360
consensus_5281#1 -------TCTATATTTATCTTTATAA-CAGACGTACATTAGGGCG-------CTTGATTA 45
* * ** ** ** * ** * ** * * ** *
consensus_5281#0 ATTCATCGACACAATGTCAGCAATTAGAACATG---TAGTAACTGAATCTCCCTCATCCA 417
consensus_5281#1 ATTCACAGCCAGAAGATGATAAATGAAACAATTCCCTAGGCACAAAAATACCACAATCTA 105
***** * ** ** * * *** * * ** *** ** ** ** *** *
consensus_5281#0 AA--AGTAATATTCTACAAGGAAGCAAAACGTCTTCCAGTAATGAACAAAATACATCACC 475
consensus_5281#1 AAGTAAAAATAGCCTGAGCGGAAAGAAAGG----TAAAGCAGTGTTCAATATACATAGTA 161
** * **** ** **** *** * ** * ** *** ******
consensus_5281#0 GCCACATCAAATTAAAACAGATAATTAACTTCACCGTAGTGTTATAACCAAAAGTATCTA 535
consensus_5281#1 AGAACA-CAAAGAAGAGCAA------CATTTCATTGT-GTGGCATA--CATGTCCCTTTT 211
*** **** * * ** * **** ** *** *** ** * *
consensus_5281#0 GTGGATTAGCTAGCTAATTTGCTTAACGTATCTTTAAAATAGTGTACACACTTGGGGTAA 595
consensus_5281#1 ACCCATAAGTTTGCTAA------TAACAAAGTGTTGTGACAAAGTCAAAATACAAAGAAT 265
** ** * ***** **** * ** * * ** * * * *
consensus_5281#0 TCTGCAAATCCTATGGACAGCTGGCTCAAACACTTGTTTTGTATCGATGATTATCTTTCC 655
consensus_5281#1 TATGTTAGGATTTTAAACTAC--ATATAAGAACTGACAACGAAGTAAT-ATTATCTT--- 319
* ** * * * ** * ** *** * * ** ********
consensus_5281#0 AGAACAATCAGAAATTTAACGATATACGAACTCAGTTTTTGGACGTTGAGGTGTTATGAA 715
consensus_5281#1 AAAACAATTTGT--CTTAATAATTTAAGTAGTTAATCTGTATGCGT--ACATTTTAAATA 375
* ****** * **** ** ** * * * * * * * *** * * *** *
consensus_5281#0 TGTATTATACCATACACAGTAGTCTTCGGTTGTCAAGTGCTATNCAGCAAGACATTGTTA 775
consensus_5281#1 AGTAGGAAAATA-AGTTACTTTTCTGCAGAAACGAAGAAATGAGCTGCGAGGTACGAAGC 434
*** * * * * * * *** * * *** * * ** ** *
consensus_5281#0 AAATTTTATATCATACTTCCCCGCTCACTTGTTGCAGATCGTAGCTTCAGATAAAAGCTT 835
consensus_5281#1 AGCTAATACAGTAAGTCAACAAGATGAAACAACCAACACGAAAGAAT--AATAATTGCTG 492
* * ** * * * * * * * * ** * **** ***
consensus_5281#0 GGAAAATTGTTTACAGATTGAAAGAGGTGGGTCCTAACTCATCCTGTTTTACACCTCTGC 895
consensus_5281#1 CGATGCTTTTCTCTGTAGTAAAATTAAGTAAATCTCTTTCAATCTGTAAACAATTTTCCA 552
** ** * * * * *** ** *** **** * *
consensus_5281#0 TTAATGTATGCATATATATATCCTGCATAAAAGTTCGGTTTTCTCTTTAACCTAATATCG 955
consensus_5281#1 AGCTTTTATCTGAAGCTACGATCTGCAACAAGTGAGCGGNGGAAGTATGATATAAAATT- 611
* *** * ** ***** ** * * * * *** **
consensus_5281#0 CATAGATACTTTGCCCGGTGTTTTCGAGATCCTCGTATTCTGATTTCTCTATTTTTGTGT 1015
consensus_5281#1 ------------------------------------------------------------
consensus_5281#0 CCATACTGTTCCAACACCTATCTTATGTACAGATAGC 1052
consensus_5281#1 -------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||