cluster # 5283

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Schistosoma mansoni
cluster # 5283 cluster # 5283 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5283#0 length = 531 sequences # 2

consensus_5283#1 length = 501 sequences # 1

consensusID : consensus_5283#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 531
fasta sequence

                              [GAAACTTCTTCGACACTATGGAGTGAGTGGCTAAGAACATCGTCAACATCATACGGAGTTCATACGACGGACTACACTGCAAAGTCGCGCATGTAGGACAGCCGACAGATGCATTTTAAGTGGGGACCGACGTCAGACAAGAATGATTACTCTCTCGCTTTCTCTTTCTTCTGGTGGTTGACTGGATTATGAAGACCTCAAAATCTCAGGGGAATCACGGAATGCAATGGAAAGTTTGGATGCAACTAGACGACTTAGACTTCACAGATGACCTACCTCTTCTTTCCCATACACAAACAATTGCAGGTCCAGACAAACAGTGTAGCGACAGCCTCTATATCAGTAGGCCTCAACATACACAAAAGAAAAACCAAGATGCTCAAATACAACACGGAGAACACCAATCCAATAATACTTGATGGAGAAACTCTGGAAGAGACGGAAACTCTTACTTACCTGAGCAGCACCGTCGATGAGTGAGGAGGATCTGATGCAGATGTAAAGGCAAGGACTTAAGAAAGGACAACATTT]

[+] EMBL CD089821             [GAAACTTCTTCGACACTATGGAGTGAGTGGCTAAGAACATCGTCAACATCATACGGAGTTCATACGACGGACTACACTGCAAAGTCGCGCATGTAGGACAGCCGACAGATGCATTTTAAGTGGGGACCGACGTCAGACAAGAATGATTACTCTCTCGCTTTCTCTTTCTTCTGGTGGTTGACTGGATTATGAAGACCTCAAAATCTCAGGGGAATCACGGAATGCAATGGAAAGTTTGGATGCAACTAGACGACTTAGACTTCACAGATGACCTACCTCTTCTTTCCCATACACAAACAATTGCAGGTCCAGACAAACAGTGTAGCGACAGCCTCTATATCAGTAGGCCTCAACATACACAAAAGAAAAACCAAGATGCTCAAATACAACACGGAGAACACCAATCCAATAATACTTGATGGAGAAACTCTGGAAGAGACGGAAACTCTTACTTACCTGAGCAGCACCGTCGATGAGTGAGGAGGATCTGATGCAGATGTAAAGGCAAGGACTTAAGAAAGGAC       ]
[-] EMBL CD089722             [                                                                  ACGGACTACACTGCAAAGTCGCGCATGTAGGACAGCCGACAGATGCATTTTAAGTGGGGACCGACGTCAGACAAGAATGATTACTCTCTCGCTTTCTCTTTATTCTGGTGGTTGACTGGATTATGAAGACCTCAAAATCTCAGGGGAATCACGGAATGCAATGGAAAGTTTGGATGCAACTAGACGACTTAGACTTCACAGATGACCTACCTCTTCTTTCCCATACACAAACAATTGCAGGTCCAGACAAACAGTGTAGCGACAGCCTCTATATCAGTAGGCCTCAACATACACAAAAGAAAAACCAAGATGCTCAAATACAACACGGAGAACACCAATCCAATAATACTTGATGGAGAAACTCTGGAAGAGACGGAAACTCTTACTTACCTGAGCAGCACCGTCGATGAGTGAGGAGGATCTGATGCAGATGTAAAGGCAAGGACTTAAGAAAGGACAACATTT]




>consensus_5283#0
GAAACTTCTTCGACACTATGGAGTGAGTGGCTAAGAACATCGTCAACATCATACGGAGTT
CATACGACGGACTACACTGCAAAGTCGCGCATGTAGGACAGCCGACAGATGCATTTTAAG
TGGGGACCGACGTCAGACAAGAATGATTACTCTCTCGCTTTCTCTTTCTTCTGGTGGTTG
ACTGGATTATGAAGACCTCAAAATCTCAGGGGAATCACGGAATGCAATGGAAAGTTTGGA
TGCAACTAGACGACTTAGACTTCACAGATGACCTACCTCTTCTTTCCCATACACAAACAA
TTGCAGGTCCAGACAAACAGTGTAGCGACAGCCTCTATATCAGTAGGCCTCAACATACAC
AAAAGAAAAACCAAGATGCTCAAATACAACACGGAGAACACCAATCCAATAATACTTGAT
GGAGAAACTCTGGAAGAGACGGAAACTCTTACTTACCTGAGCAGCACCGTCGATGAGTGA
GGAGGATCTGATGCAGATGTAAAGGCAAGGACTTAAGAAAGGACAACATTT

consensusID : consensus_5283#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence

                              [GGGAGTAGGCGGCGGAAAGAATGAGAAAAACATAACACTCACCTGAAAACAAAATACTATGACAAATGTTTTCATGTAAAATTTTACGTCAATTTCGTAAAATTGAATCATTTCAGTCATTATCTTTAACGTTTAAGACGGTTTTACAATTTAATTAACTCAAATTGGACAGCTTGAATGCAACTAGACGATTTAGACTTCGCAGATCACCTGGAACTTCTATCCTATACACATCAACAAATGCAGGTCAATGCAACCAGTGTAGTAGAAGCCTATACAGCAGTAGGCCTAATCATACACAAGAGAAAAAGCAAAATCCTCAAATACAACACGGAGAACACCAATCCAATTACACTTGATGGAGAAACTGTGTTCACTAAGACTAAAGCAATATAATAATAAATAATTCATTCGAAAATAGCCTCAATAATTCAATGTAACGTCTTCCATTATACAATTGTAGTTGACAGAAGTGTTAATTTATGTTCATGAGAAGAGAAT]

[+] EMBL CD201886             [GGGAGTAGGCGGCGGAAAGAATGAGAAAAACATAACACTCACCTGAAAACAAAATACTATGACAAATGTTTTCATGTAAAATTTTACGTCAATTTCGTAAAATTGAATCATTTCAGTCATTATCTTTAACGTTTAAGACGGTTTTACAATTTAATTAACTCAAATTGGACAGCTTGAATGCAACTAGACGATTTAGACTTCGCAGATCACCTGGAACTTCTATCCTATACACATCAACAAATGCAGGTCAATGCAACCAGTGTAGTAGAAGCCTATACAGCAGTAGGCCTAATCATACACAAGAGAAAAAGCAAAATCCTCAAATACAACACGGAGAACACCAATCCAATTACACTTGATGGAGAAACTGTGTTCACTAAGACTAAAGCAATATAATAATAAATAATTCATTCGAAAATAGCCTCAATAATTCAATGTAACGTCTTCCATTATACAATTGTAGTTGACAGAAGTGTTAATTTATGTTCATGAGAAGAGAAT]




>consensus_5283#1
GGGAGTAGGCGGCGGAAAGAATGAGAAAAACATAACACTCACCTGAAAACAAAATACTAT
GACAAATGTTTTCATGTAAAATTTTACGTCAATTTCGTAAAATTGAATCATTTCAGTCAT
TATCTTTAACGTTTAAGACGGTTTTACAATTTAATTAACTCAAATTGGACAGCTTGAATG
CAACTAGACGATTTAGACTTCGCAGATCACCTGGAACTTCTATCCTATACACATCAACAA
ATGCAGGTCAATGCAACCAGTGTAGTAGAAGCCTATACAGCAGTAGGCCTAATCATACAC
AAGAGAAAAAGCAAAATCCTCAAATACAACACGGAGAACACCAATCCAATTACACTTGAT
GGAGAAACTGTGTTCACTAAGACTAAAGCAATATAATAATAAATAATTCATTCGAAAATA
GCCTCAATAATTCAATGTAACGTCTTCCATTATACAATTGTAGTTGACAGAAGTGTTAAT
TTATGTTCATGAGAAGAGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5283#0      GAAACTTCTTCGACACTATGGAGTGAGTGGCTAAGAACATCGTCAACATCATACGGAGTT 60
consensus_5283#1      -----------------------------------------GGGAGTAGGCGGCGGAAAG 19
                                                               *  *  *     ****   

consensus_5283#0      CATACGACGGACTACACTGCAAAGTCGCGCATGTAGGACAGCCGACAGATGCATTTTAAG 120
consensus_5283#1      AATGAGAAAAAC-ATAACACTCACCTGAAAACAAAATACTAT-GACAAATGT-TTTCATG 76
                       **  **   ** * *   *  *   *   *   *  **    **** ***  *** * *

consensus_5283#0      TGGGGACCGACGTCAGACAAGAATGATTACTCTCTCGCTTTCTCTTTCTTCTGGTGGTTG 180
consensus_5283#1      TAAAATTTTACGTCAATTTCGTAAAATTGAATCATTTCAGTCATTATCTT--------TA 128
                      *        ******     * *  ***      *  *  **  * ****        * 

consensus_5283#0      ACTGGATTATGAAGACCTCAAAATCTCAGGGGAATCACGGAATGCAATGGAAAGTTTGGA 240
consensus_5283#1      AC--GTTTAAGACGGTTTTACAATTT-----AATTAACTCAA---ATTGGACAGCTTGAA 178
                      **  * *** ** *   * * *** *      * * **  **   * **** ** *** *

consensus_5283#0      TGCAACTAGACGACTTAGACTTCACAGATGACCTACCTCTTCTTTCCCATACACA--AAC 298
consensus_5283#1      TGCAACTAGACGATTTAGACTTCGCAGATCACCTGGAACTTCTATCCTATACACATCAAC 238
                      ************* ********* ***** ****    ***** *** *******  ***

consensus_5283#0      AATTGCAGGTCCAGACAAACAGTGTAGCGACAGCCTCTATATCAGTAGGCCTCAACATAC 358
consensus_5283#1      AAATGCAGGTCAATGCAACCAGTGTAGTAGAAGCCTATACAGCAGTAGGCCTAATCATAC 298
                      ** ******** *  *** ********    ***** ** * ********** * *****

consensus_5283#0      ACAAAAGAAAAACCAAGATGCTCAAATACAACACGGAGAACACCAATCCAATAATACTTG 418
consensus_5283#1      ACAAGAGAAAAAGCAAAATCCTCAAATACAACACGGAGAACACCAATCCAATTACACTTG 358
                      **** ******* *** ** ******************************** * *****

consensus_5283#0      ATGGAGAAACTCTG---GAAGAGACGGAAACTCT-----------TACTTACCTGAGCAG 464
consensus_5283#1      ATGGAGAAACTGTGTTCACTAAGACTAAAGCAATATAATAATAAATAATTCATTCGAAAA 418
                      *********** **       ****  ** *  *           ** **   *    * 

consensus_5283#0      CACCGTCGATGAGTGAGGAGGATCTGATGCAGATGTAAAGGCAAGGACTTAAGAAAGGAC 524
consensus_5283#1      TAGCCTCAATAATTCAATGTAACGTCTTCCAT-TATACAATTGTAGTTGACAGAAGTGTT 477
                       * * ** ** * * *     *  *  * **  * ** *      *     ****  *  

consensus_5283#0      AACATTT----------------- 531
consensus_5283#1      AATTTATGTTCATGAGAAGAGAAT 501
                      **  * *