cluster # 529

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Schistosoma mansoni
cluster # 529 cluster # 529 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_529#0 length = 564 sequences # 1

consensus_529#1 length = 555 sequences # 1

consensusID : consensus_529#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence

                              [CATAATACTTATACTCTTACTACTTCTACCAATATGGGATTTGAATCGACAACTTCATCTCTGTGCTAATGTGGTATGGCAACTCGAACTGATGCACGTACGTACGAAGTTCTACGCTGTAACTGACTGACTGACTGACTCTCGGCCGTACCAGGGCATTTGGAGATCAAACAATATAATGTATATTAAGACCTATAATGGTAAAAACGATCCCAAAATCTGACTGTTGTTGGGTTAGCGCGATCAAAAAACTAGAGAATGAACGAAAATTCCATTCCCAAAGAAAAAAAATACTGAACAGTAATACACCTAAATCCAAAACCATTTTAATATGCATAACTACTTATTTTTGGAGTAGATTACATACGATATGAAAACCATATGAAAATATTTTAAAATGACTACGGTTTTTTAATGTTATGTAGTAGGAAATTAATTCGTAGAATTNNAGTAGTCATCTTGGACGCATNCAACACTACATTTAATTGTGNTGGAACAGTTTACTTATTTTTTGTGTCCTCTGNAGAATNCTACTAGAAATAAATCATCTTTCTACATATTTGT]

[+] EMBL CD158103             [CATAATACTTATACTCTTACTACTTCTACCAATATGGGATTTGAATCGACAACTTCATCTCTGTGCTAATGTGGTATGGCAACTCGAACTGATGCACGTACGTACGAAGTTCTACGCTGTAACTGACTGACTGACTGACTCTCGGCCGTACCAGGGCATTTGGAGATCAAACAATATAATGTATATTAAGACCTATAATGGTAAAAACGATCCCAAAATCTGACTGTTGTTGGGTTAGCGCGATCAAAAAACTAGAGAATGAACGAAAATTCCATTCCCAAAGAAAAAAAATACTGAACAGTAATACACCTAAATCCAAAACCATTTTAATATGCATAACTACTTATTTTTGGAGTAGATTACATACGATATGAAAACCATATGAAAATATTTTAAAATGACTACGGTTTTTTAATGTTATGTAGTAGGAAATTAATTCGTAGAATTNNAGTAGTCATCTTGGACGCATNCAACACTACATTTAATTGTGNTGGAACAGTTTACTTATTTTTTGTGTCCTCTGNAGAATNCTACTAGAAATAAATCATCTTTCTACATATTTGT]




>consensus_529#0
CATAATACTTATACTCTTACTACTTCTACCAATATGGGATTTGAATCGACAACTTCATCT
CTGTGCTAATGTGGTATGGCAACTCGAACTGATGCACGTACGTACGAAGTTCTACGCTGT
AACTGACTGACTGACTGACTCTCGGCCGTACCAGGGCATTTGGAGATCAAACAATATAAT
GTATATTAAGACCTATAATGGTAAAAACGATCCCAAAATCTGACTGTTGTTGGGTTAGCG
CGATCAAAAAACTAGAGAATGAACGAAAATTCCATTCCCAAAGAAAAAAAATACTGAACA
GTAATACACCTAAATCCAAAACCATTTTAATATGCATAACTACTTATTTTTGGAGTAGAT
TACATACGATATGAAAACCATATGAAAATATTTTAAAATGACTACGGTTTTTTAATGTTA
TGTAGTAGGAAATTAATTCGTAGAATTNNAGTAGTCATCTTGGACGCATNCAACACTACA
TTTAATTGTGNTGGAACAGTTTACTTATTTTTTGTGTCCTCTGNAGAATNCTACTAGAAA
TAAATCATCTTTCTACATATTTGT

consensusID : consensus_529#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 555
fasta sequence

                              [AAACGTATTTTAATTTCAACTAAAAATTATGTACAATAATCAATACTTGCACCATAAAATATTCAATAAAAACAAATGAAAATATGTGCAAATTAGTTCAAAATATTAAAAAAAAACGATCACAAACTACAAATAATTGTAAATATTCACGTACTAATTCTGTAATTAGATGAAATCTGTACATTTTACAAATAGATTTACACTCAGATAATATGCGACATTCAAGTTCAGTACTTGTCAACGTGGCACAAACCCATGAAGTCGCTGAAGTGGACTGGGCCGTGTTGGTAGGTGTAGACTACCTGGTTGGGATTCGCGAGATGATAGCAACCGATGGTTAGAGACCTTGAATGACATGGCTCAAAATCATTTGCAATGGCGAAGGTGCATCCACTCCTTGTGTTCTACCAAATTCTAATCTTTTGAATTCTCCAAATTTATTTCACTGTATTATACTCCTTCAATAACATCTTCAAAACCCTAATCTTTCGGATTACTGCTTATACTCTTAATACTTCTACCACTATGGGATTTGAATCGACAACTGAATCTCTG]

[+] EMBL CD076790             [AAACGTATTTTAATTTCAACTAAAAATTATGTACAATAATCAATACTTGCACCATAAAATATTCAATAAAAACAAATGAAAATATGTGCAAATTAGTTCAAAATATTAAAAAAAAACGATCACAAACTACAAATAATTGTAAATATTCACGTACTAATTCTGTAATTAGATGAAATCTGTACATTTTACAAATAGATTTACACTCAGATAATATGCGACATTCAAGTTCAGTACTTGTCAACGTGGCACAAACCCATGAAGTCGCTGAAGTGGACTGGGCCGTGTTGGTAGGTGTAGACTACCTGGTTGGGATTCGCGAGATGATAGCAACCGATGGTTAGAGACCTTGAATGACATGGCTCAAAATCATTTGCAATGGCGAAGGTGCATCCACTCCTTGTGTTCTACCAAATTCTAATCTTTTGAATTCTCCAAATTTATTTCACTGTATTATACTCCTTCAATAACATCTTCAAAACCCTAATCTTTCGGATTACTGCTTATACTCTTAATACTTCTACCACTATGGGATTTGAATCGACAACTGAATCTCTG]




>consensus_529#1
AAACGTATTTTAATTTCAACTAAAAATTATGTACAATAATCAATACTTGCACCATAAAAT
ATTCAATAAAAACAAATGAAAATATGTGCAAATTAGTTCAAAATATTAAAAAAAAACGAT
CACAAACTACAAATAATTGTAAATATTCACGTACTAATTCTGTAATTAGATGAAATCTGT
ACATTTTACAAATAGATTTACACTCAGATAATATGCGACATTCAAGTTCAGTACTTGTCA
ACGTGGCACAAACCCATGAAGTCGCTGAAGTGGACTGGGCCGTGTTGGTAGGTGTAGACT
ACCTGGTTGGGATTCGCGAGATGATAGCAACCGATGGTTAGAGACCTTGAATGACATGGC
TCAAAATCATTTGCAATGGCGAAGGTGCATCCACTCCTTGTGTTCTACCAAATTCTAATC
TTTTGAATTCTCCAAATTTATTTCACTGTATTATACTCCTTCAATAACATCTTCAAAACC
CTAATCTTTCGGATTACTGCTTATACTCTTAATACTTCTACCACTATGGGATTTGAATCG
ACAACTGAATCTCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_529#0      CATAATACTTATACTCTTACTACTTCTACCAATATGGGATTTGAATCGACAACTTCATCT 60
consensus_529#1      ------AAACGTATTTTAATTTCAACTAAAAATTATGTACAATAATCAATACTTGCA-CC 53
                           *    ** * * * * *  ***  ***   * *    **** * *  * ** * 

consensus_529#0      CTGTGCTAATGTGGTATGGCAACTCGAACTG-ATGCACGTACGTACGAAGTTCTACGCTG 119
consensus_529#1      ATAAAATATTCAATAAAAACAAATGAAAATATGTGCAAATTAGTTCAAAATATTAAAAAA 113
                      *    ** *     *   *** *  ** *   ****  *  ** * ** *  **     

consensus_529#0      TAACTGACTGACTGACTGACTCTCGGCCGTACCAGGGCATTTGGAGATCAAACAATATAA 179
consensus_529#1      AAACGATC--ACAAACT-ACAAATAATTGTAAATATTCACGTACTAATTCTGTAATTAGA 170
                      ***   *  **  *** **        ***      **  *    **     ***   *

consensus_529#0      TGTATATTAAGACCTATAATGGTAAAAACGATCCCAAAATCTGACTGTTGTTGGGTTAGC 239
consensus_529#1      TGAAATCTGTACATTTTACAAATAGATTTACACTCAGATAATATGCGACATTCAAGTTCA 230
                     ** *   *      * **    ** *      * ** *   *    *   **    *   

consensus_529#0      GCGATCAAAAAACTAGAGAATGAACGAAAATTCCATTCCCAAAGAAAAAAAATACTGAAC 299
consensus_529#1      GTACTTGTCAACGTGGCACAAACCCATGAAGTCGCTGAAGTGGACTGGGCCGTGTTGGTA 290
                     *   *    **  * *   *    *   ** **  *                *  **   

consensus_529#0      AGTA-ATACACCTAAATCCAAAACCATTTTAATATGCATAACTACTTATTTTTGGAGTAG 358
consensus_529#1      GGTGTAGACTACCTGGTTGGGATTCGC---GAGATG-ATAGCAACCGATGGTTAGAG-AC 345
                      **  * **  *    *    *  *      * *** *** * **  **  ** *** * 

consensus_529#0      ATTACATACGATA--TGAAAACCATATGAAAATATTTTAAAATGACTACGGTTTTTTAAT 416
consensus_529#1      CTTGAATGACATGGCTCAAAATCATTTGCAATGGC--GAAGGTGCATCCACTCCTTGTGT 403
                      **  **   **   * **** *** ** **       **  **  * *  *  **   *

consensus_529#0      GTTATGTAGTAGGAAATT----AATTCGTAGAATTNNAGTAGTCATCTTGGACGCATNCA 472
consensus_529#1      TCTACCAAATTCTAATCTTTTGAATTCTCCAAATTTATTTCACTGTATTATACTCCTTCA 463
                       **   * *   **  *    *****    ****    *     * **  ** * * **

consensus_529#0      ACACTACATTTAA--TTGTGNTGGAACAGTTTACTTATTTTTTGTGTCCTCTGNAGAATN 530
consensus_529#1      ATAACATCTTCAAAACCCTAATCTTTCGGATTACTGCTTATACTCTTAATACTTCTACCA 523
                     * *  *  ** **     *  *    * * *****  ** *     *  *      *   

consensus_529#0      CTACTAGAAATAAATCATCTTTCTACATATTTGT 564
consensus_529#1      CTATGGGATTTGAATCGACAA-CTGAATCTCTG- 555
                     ***   **  * ****  *   **  ** * **