cluster # 5292

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Schistosoma mansoni
cluster # 5292 cluster # 5292 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5292#0 length = 357 sequences # 2

consensus_5292#1 length = 91 sequences # 1

consensusID : consensus_5292#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 357
fasta sequence

                              [TGAACTACATGAACATGCTACTTATTTGGTCGATAGTTTATGGGATTTATGCCCAATGCTTCGCGATTGGGAAGCTATGCTAGATTTGCTTCTTGAAGAACCAGGAAGAGGTGAGGAACCTATGGATGCAAATCAAGAAACAAGTTTGATCGAAATTATGGTTTGTTGTGTTCGTCAAGCAGCAACGGGGGAATCACCAGTAGGACGACAGACTGGTGGCCATCATTCACATTCCAACACCAACTTATTGACTGGTATGAGCTTTCCGGAAACTGGTGGACGCAGTCGAGGTGGTGCAACCACCGGCACAGGGAACAGCGCTGCACCATCCTCTCGTGAAGCTCGTGCCCTGGCTGA]

[+] EMBL CD193928             [TGAACTACATGAACATGCTACTTATTTGGTCGATAGTTTATGGGATTTATGCCCAATGCTTCGCGATTGGGAAGCTATGCTAGATTTGCTTCTTGAAGAACCAGGAAGAGGTGAGGAACCTATGGATGCAAATCAAGAAACAAGTTTGATCGAAATTATGGTTTGTTGTGTTCGTCAAGCAGCAACGGGGGAATCACCAGTAGGACGACAGACTGGTGGCCATCATTCACATTCCAACACCAACTTATTGACTGGTATGAGCTTTCCGGAAACTGGTGGACGCAGTCGAGGTGGTGCAACCACCGGCACAGGGAACAGCGCTGCACCATCCTCTCGTGAAGCTCGTGCCCTGGCTGA]
[+] EMBL CD193402             [          GAACATGCTACTTATTTGGTCGATAGTTTATGGGATTTATGCCCAATGCTTCTCGACCGGGAAGCTATGCTAGATTTGCTTCTTGAAGAACCAGGAAGAGGTGAGGAACCTATGGATGCAAATCAAGAAACAAGTTTGATCGAAATTATGGTTTGTTGTGTTCGTCAAGCAGCAGCGGCGGAATCACCAGTAGGACGACAGACTGGTGGCCATCATTCACATTCCAACACCAACTTATTGACTGGTATGAGCTTTCCGGAAACTGGTGGACGCAGTCGAGGTGGTGCAACCAC                                                      ]




>consensus_5292#0
TGAACTACATGAACATGCTACTTATTTGGTCGATAGTTTATGGGATTTATGCCCAATGCT
TCGCGATTGGGAAGCTATGCTAGATTTGCTTCTTGAAGAACCAGGAAGAGGTGAGGAACC
TATGGATGCAAATCAAGAAACAAGTTTGATCGAAATTATGGTTTGTTGTGTTCGTCAAGC
AGCAACGGGGGAATCACCAGTAGGACGACAGACTGGTGGCCATCATTCACATTCCAACAC
CAACTTATTGACTGGTATGAGCTTTCCGGAAACTGGTGGACGCAGTCGAGGTGGTGCAAC
CACCGGCACAGGGAACAGCGCTGCACCATCCTCTCGTGAAGCTCGTGCCCTGGCTGA

consensusID : consensus_5292#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 91
fasta sequence

                              [CGTAGTGAAAATACACCACTCATTTCGTGACCTCGTGCAATTTTTCATCGAGAGTGAACTACATGAACATGCTACTTNATTTGGTCGATAG]

[+] EMBL CD157607             [CGTAGTGAAAATACACCACTCATTTCGTGACCTCGTGCAATTTTTCATCGAGAGTGAACTACATGAACATGCTACTTNATTTGGTCGATAG]




>consensus_5292#1
CGTAGTGAAAATACACCACTCATTTCGTGACCTCGTGCAATTTTTCATCGAGAGTGAACT
ACATGAACATGCTACTTNATTTGGTCGATAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5292#0      TGAACTACATGAACATGCTACTTATTTGGTCGATAGTTTATGGGATTTATGCCCAATGCT 60
consensus_5292#1      --CGTAGTGAAAATACACCACTCATTTCGT---GACCTCGTGCAATTTTTCATCGAGAGT 55
                                 ** *  * *** **** **    *  *  **  **** *   * *   *

consensus_5292#0      TCGCGATTGGGAAGCTATGCTAGATTTGCTTCTTGAAGAACCAGGAAGAGGTGAGGAACC 120
consensus_5292#1      GAACTACATGAACATGCTACTTNATTTGGTCGATAG------------------------ 91
                         * *   * *     * **  ***** *   *                          

consensus_5292#0      TATGGATGCAAATCAAGAAACAAGTTTGATCGAAATTATGGTTTGTTGTGTTCGTCAAGC 180
consensus_5292#1      ------------------------------------------------------------
                                                                                  

consensus_5292#0      AGCAACGGGGGAATCACCAGTAGGACGACAGACTGGTGGCCATCATTCACATTCCAACAC 240
consensus_5292#1      ------------------------------------------------------------
                                                                                  

consensus_5292#0      CAACTTATTGACTGGTATGAGCTTTCCGGAAACTGGTGGACGCAGTCGAGGTGGTGCAAC 300
consensus_5292#1      ------------------------------------------------------------
                                                                                  

consensus_5292#0      CACCGGCACAGGGAACAGCGCTGCACCATCCTCTCGTGAAGCTCGTGCCCTGGCTGA 357
consensus_5292#1      ---------------------------------------------------------