cluster # 5294

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 5294 cluster # 5294 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5294#0 length = 543 sequences # 1

consensus_5294#1 length = 408 sequences # 2

consensusID : consensus_5294#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence

                              [AAATTGCTCGCCGGCAGCCTGACCATGACTTTTTTTGTTTACGTTTTCGTCAACATCGGTATGGTCAGTGGCCTGTTGCCGGTGGTTGGGGTGCCGTTGCCGTTCATTAGCTACGGCGGAACTTCGCTGGTGACATTGATGTCAGCGTTTGGGGTTTTGATGTCGATTCACACGCATCGCAAGTGGATCGCGCAGGTTTGAATAAGGTGAAGATGTCAATGCAAGTAATGCGCGGCTGGGCGACTCGGCACGCGTCCTGGATGGGCCTGATTGGGCTGCTGGGCGCGACGCAAGAGGTGCAGGCCGGTGACTACGATGGTTCACCCCAGGTCGCCGAATTTGTCGGTGAAATGACCCGCGACTACGGTTTTGCCGGTGAACAACTGATGGGCGTGTTCCGTGAAGCCCAGCGCAAGCAGGCGATCCTCGACGCGATCTCGCGTCCCGCCGAGCGCGTCAAACAGTGGAAAGACTACCGCCCGATGTTCCTCACCGACGCCCGTGTGGCGCGGGGCGTGGACTTCTGGCGCCANCACGAAGCGG]

[+] EMBL CD073212             [AAATTGCTCGCCGGCAGCCTGACCATGACTTTTTTTGTTTACGTTTTCGTCAACATCGGTATGGTCAGTGGCCTGTTGCCGGTGGTTGGGGTGCCGTTGCCGTTCATTAGCTACGGCGGAACTTCGCTGGTGACATTGATGTCAGCGTTTGGGGTTTTGATGTCGATTCACACGCATCGCAAGTGGATCGCGCAGGTTTGAATAAGGTGAAGATGTCAATGCAAGTAATGCGCGGCTGGGCGACTCGGCACGCGTCCTGGATGGGCCTGATTGGGCTGCTGGGCGCGACGCAAGAGGTGCAGGCCGGTGACTACGATGGTTCACCCCAGGTCGCCGAATTTGTCGGTGAAATGACCCGCGACTACGGTTTTGCCGGTGAACAACTGATGGGCGTGTTCCGTGAAGCCCAGCGCAAGCAGGCGATCCTCGACGCGATCTCGCGTCCCGCCGAGCGCGTCAAACAGTGGAAAGACTACCGCCCGATGTTCCTCACCGACGCCCGTGTGGCGCGGGGCGTGGACTTCTGGCGCCANCACGAAGCGG]




>consensus_5294#0
AAATTGCTCGCCGGCAGCCTGACCATGACTTTTTTTGTTTACGTTTTCGTCAACATCGGT
ATGGTCAGTGGCCTGTTGCCGGTGGTTGGGGTGCCGTTGCCGTTCATTAGCTACGGCGGA
ACTTCGCTGGTGACATTGATGTCAGCGTTTGGGGTTTTGATGTCGATTCACACGCATCGC
AAGTGGATCGCGCAGGTTTGAATAAGGTGAAGATGTCAATGCAAGTAATGCGCGGCTGGG
CGACTCGGCACGCGTCCTGGATGGGCCTGATTGGGCTGCTGGGCGCGACGCAAGAGGTGC
AGGCCGGTGACTACGATGGTTCACCCCAGGTCGCCGAATTTGTCGGTGAAATGACCCGCG
ACTACGGTTTTGCCGGTGAACAACTGATGGGCGTGTTCCGTGAAGCCCAGCGCAAGCAGG
CGATCCTCGACGCGATCTCGCGTCCCGCCGAGCGCGTCAAACAGTGGAAAGACTACCGCC
CGATGTTCCTCACCGACGCCCGTGTGGCGCGGGGCGTGGACTTCTGGCGCCANCACGAAG
CGG

consensusID : consensus_5294#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 408
fasta sequence

                              [CTGATCGGGCGCGGGCTGGTGATTACCGCCCAGGCCCAGACGCTGTTCGGCAAACTGCTGGCCGGCAGCCTGACCATGACGTTTTTTGTGTATGTTTTCGTCAACATCGGTATGGTCAGCGGTCTGCTGCCGGTGGTGGGGGTGCCGTTGCCATTCATTAGCTATGGCGGAACTTCGCTGGTGACACTGCTGTCAGCGTTTGGGGTTTTGATGTCGATCCATACCCACCGCAAGTGGATCGCACAGGTTTGAGCAAGGTGAACAATTCAATGCAAGTATTGCGCGGTTGGGCGGCTCGGTGTGCGCCCTGGATAGGCCTGGTCGGCTGTCTGGGGGCAGGAACGGGCGCGCTGGCCGGTGACTACGAAGGTTCGCCGCAAGTGGCCCAGTTCGTCGCGGAAATGACCC]

[+] EMBL CD163270             [CTGATCGGGCGCGGGCTGGTGATTACCGCCCAGGCCCAGACGCTGTTCGGCAAACTGCTGGCCGGCAGCCTGACCATGACGTTTTTTGTGTATGTTTTCGTCAACATCGGTATGGTCAGCGGTCTGCTGCCGGTGGTGGGGGTGCCGTTGCCATTCATTAGCTATGGCGGAACTTCGCTGGTGACACTGCTGTCAGCGTTTGGGGTTTTGATGTCGATCCATACCCACCGCAAGTGGATCGCACAGGTTTGAGCAAGGTGAACAATTCAATGCAAGTATTGCGCGGTTGGGCGGCTCGGTGTGCGCCCTGGATAGGCCTGGTCGGCTGTCTGGGGGCAGGAACGGGCGCGCTGGCCGGTGACTACGAAGGTTCGCCGCAAGTGGCCCAGTTCGTCGCGGAAATGACC ]
[-] EMBL CD163451             [  GATCGGGCGCGGGCTGGTGATTACCGCCCAGGCCCAGACGCTGTTCGGCAAACTGCTGGCCGGCAGCCTGACCATGACGTTTTTTGTGTATGTTTTCGTCAACATCGGTATGGTCAGCGGTCTGCTGCCGGTGGTGGGGGTGCCGTTGCCATTCATTAGCTATGGCGGAACTTCGCTGGTGACACTGCTGTCAGCGTTTGGGGTTTTGATGTCGATCCATACCCACCGCAAGTGGATCGCACAGGTTTGAGCAAGGTGAACAATTCAATGCAAGTATTGCGCGGTTGGGCGGCTCGGTGTGCGCCCTGGATAGGCCTGGTCGGCTGTCTGGGGGCAGGAACGGGCGCGCTGGCCGGTGACTACGAAGGTTCGCCGCAAGTGGCCCAGTTCGTCGCGGAAATGACCC]




>consensus_5294#1
CTGATCGGGCGCGGGCTGGTGATTACCGCCCAGGCCCAGACGCTGTTCGGCAAACTGCTG
GCCGGCAGCCTGACCATGACGTTTTTTGTGTATGTTTTCGTCAACATCGGTATGGTCAGC
GGTCTGCTGCCGGTGGTGGGGGTGCCGTTGCCATTCATTAGCTATGGCGGAACTTCGCTG
GTGACACTGCTGTCAGCGTTTGGGGTTTTGATGTCGATCCATACCCACCGCAAGTGGATC
GCACAGGTTTGAGCAAGGTGAACAATTCAATGCAAGTATTGCGCGGTTGGGCGGCTCGGT
GTGCGCCCTGGATAGGCCTGGTCGGCTGTCTGGGGGCAGGAACGGGCGCGCTGGCCGGTG
ACTACGAAGGTTCGCCGCAAGTGGCCCAGTTCGTCGCGGAAATGACCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5294#0      ---------------------------------------------------AAATTGCTC 9
consensus_5294#1      CTGATCGGGCGCGGGCTGGTGATTACCGCCCAGGCCCAGACGCTGTTCGGCAAACTGCTG 60
                                                                         *** **** 

consensus_5294#0      GCCGGCAGCCTGACCATGACTTTTTTTGTTTACGTTTTCGTCAACATCGGTATGGTCAGT 69
consensus_5294#1      GCCGGCAGCCTGACCATGACGTTTTTTGTGTATGTTTTCGTCAACATCGGTATGGTCAGC 120
                      ******************** ******** ** ************************** 

consensus_5294#0      GGCCTGTTGCCGGTGGTTGGGGTGCCGTTGCCGTTCATTAGCTACGGCGGAACTTCGCTG 129
consensus_5294#1      GGTCTGCTGCCGGTGGTGGGGGTGCCGTTGCCATTCATTAGCTATGGCGGAACTTCGCTG 180
                      ** *** ********** ************** *********** ***************

consensus_5294#0      GTGACATTGATGTCAGCGTTTGGGGTTTTGATGTCGATTCACACGCATCGCAAGTGGATC 189
consensus_5294#1      GTGACACTGCTGTCAGCGTTTGGGGTTTTGATGTCGATCCATACCCACCGCAAGTGGATC 240
                      ****** ** **************************** ** ** ** ************

consensus_5294#0      GCGCAGGTTTGAATAAGGTGAAGATGTCAATGCAAGTAATGCGCGGCTGGGCGACTCGGC 249
consensus_5294#1      GCACAGGTTTGAGCAAGGTGAACAATTCAATGCAAGTATTGCGCGGTTGGGCGGCTCGGT 300
                      ** *********  ******** *  ************ ******* ****** ***** 

consensus_5294#0      ACGCGTCCTGGATGGGCCTGATTGGGCTGCTGGGCGCGACGCAAGAGGTGCAGGCCGGTG 309
consensus_5294#1      GTGCGCCCTGGATAGGCCTGGTCGGCTGTCTGGGGGCAGGAACGGGCGCGCTGGCCGGTG 360
                        *** ******* ****** * **    ***** **       *  * ** ********

consensus_5294#0      ACTACGATGGTTCACCCCAGGTCGCCGAATTTGTCGGTGAAATGACCCGCGACTACGGTT 369
consensus_5294#1      ACTACGAAGGTTCGCCGCAAGTGGCCCAGTTCGTCGCGGAAATGACCC------------ 408
                      ******* ***** ** ** ** *** * ** ****  **********            

consensus_5294#0      TTGCCGGTGAACAACTGATGGGCGTGTTCCGTGAAGCCCAGCGCAAGCAGGCGATCCTCG 429
consensus_5294#1      ------------------------------------------------------------
                                                                                  

consensus_5294#0      ACGCGATCTCGCGTCCCGCCGAGCGCGTCAAACAGTGGAAAGACTACCGCCCGATGTTCC 489
consensus_5294#1      ------------------------------------------------------------
                                                                                  

consensus_5294#0      TCACCGACGCCCGTGTGGCGCGGGGCGTGGACTTCTGGCGCCANCACGAAGCGG 543
consensus_5294#1      ------------------------------------------------------