cluster # 5295

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Schistosoma mansoni
cluster # 5295 cluster # 5295 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5295#0 length = 770 sequences # 2

consensus_5295#1 length = 442 sequences # 1

consensusID : consensus_5295#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 770
fasta sequence

                              [CAGAATTGTATCTGGCAGACATCCAATTACAATAATAATAATAATAATTAATAGAAAAATAAGCATTATCAGTCTTTCTTTTTCCTTCTTTGAACAGTTATTCCATTCAATGTTCAATGTTTTATAATTGATTGATAGTTATTTCTAATAACAATTTTTTTTATTTGTTTATAACAACAATGGAAAATGTAAGTATGGATAGTAAATTGAAAATGATAAATACAAATAATATTCATAATAACATGACAACTTCAATACAACAAGTAATGGAAACAACAGAAAATAATAATATGATGAGTACTAATGCCTTATGGACTGAAAAAGAACAAAGGGCTACAGTTATTATAGTCGTAGCGTTAGTAACAATTATCACAATTTGTGTAATTTTAATTATTCTACGAACATTGAGAAAGAAATCAAATAAAAAATCCAGCGGACTTTCGATTAGGAACCAAAAGAAAACATCTCAATCCGATAAAATTAACAAAGTAGAAGAGAGAGGGAATTATTCGTGTATACTCAATGATAACCTCAGCGAACCTAAGTGGATTATGCAGCAACAATCAACAGTAGGCCGTACATCTGATAGGATTAGGAAAGTCCCCGACAGAAAACCCCGAAAATAAGAAATGGTACGATTCAGCAGCAATTCCTTTCATGGATGACGTCCATTCATCGATGTACAACCTGCACACAGATCAACGTAAGAATCAACAAATATGATTAGATGTATATAGTTTCAGTGTGTAAAGATAATTATTAATAACGTA]

[+] EMBL CD078758             [CAGAATTGTATCTGGCAGACATCCAATTACAATAATAATAATAATAATTAATAGAAAAATAAGCATTATCAGTCTTTCTTTTTCCTTCTTTGAACAGTTATTCCATTCAATGTTCAATGTTTTATAATTGATTGATAGTTATTTCTAATAACAATTTTTTTTATTTGTTTATAACAACAATGGAAAATGTAAGTATGGATAGTAAATTGAAAATGATAAATACAAATAATATTCATAATAACATGACAACTTCAATACAACAAGTAATGGAAACAACAGAAAATAATAATATGATGAGTACTAATGCCTTATGGACTGAAAAAGAACAAAGGGCTACAGTTATTATAGTCGTAGCGTTAGTAACAATTATCACAATTTGTGTAATTTTAATTATTCTACGAACATTGAGAAAGAAATCAAATAAAAAATCCAGCGGACTTTCGATTAGGAACCAAAAGAAAACATCTCAATCCGATAAAATTAACAAAGTAGAAGAGAGAGGGAATTATTCGTGTATACTCAATGATAACCTCAGCGAACCTAAGTGGATTATGCAGCAACAATCAACAGTAGGCCGTACATCTGATAGGATTAGGAAAGTCCCCGACAGA                                                                                                                                                               ]
[-] EMBL CD073218             [                                                                                                                                                                                                               TGAAAATGATAAATACANATAATATTCATAATAACATGACAACTTCAATACAACAAGTAATGGAAACAACAGAAAATAATAATATGATGAGTACTAATGCCTTATGGACTGAAAAAGAACAAAGGGCTACAGTTATTATAGTCGTAGCGTTAGTAACAATTATCACAATTTGTGTAATTTTAATTATTCTACGAACATTGAGAAAGAAATCAAATAAAAAATCCAGCGGACTTTCGATTAGGAACCAAAAGAAAACATCTCAATCCGATAAAATTAACAAAGTAGAAGAGAGAGGGAATTATTCGTGTATACTCAATGATAACCTCAGCGAACCTAAGTGGATTATGCAGCAACAATCAACAGTAGGCCGTACATCTGATAGGATTAGGAAAGT CCCGACAAGAAACCCCGAAAATAAGAAATGGTACGATTCAGCAGCAATTCCTTTCATGGATGACGTCCATTCATCGATGTACAACCTGCACACAGATCAACGTAAGAATCAACAAATATGATTAGATGTATATAGTTTCAGTGTGTAAAGATAATTATTAATAACGTA]




>consensus_5295#0
CAGAATTGTATCTGGCAGACATCCAATTACAATAATAATAATAATAATTAATAGAAAAAT
AAGCATTATCAGTCTTTCTTTTTCCTTCTTTGAACAGTTATTCCATTCAATGTTCAATGT
TTTATAATTGATTGATAGTTATTTCTAATAACAATTTTTTTTATTTGTTTATAACAACAA
TGGAAAATGTAAGTATGGATAGTAAATTGAAAATGATAAATACAAATAATATTCATAATA
ACATGACAACTTCAATACAACAAGTAATGGAAACAACAGAAAATAATAATATGATGAGTA
CTAATGCCTTATGGACTGAAAAAGAACAAAGGGCTACAGTTATTATAGTCGTAGCGTTAG
TAACAATTATCACAATTTGTGTAATTTTAATTATTCTACGAACATTGAGAAAGAAATCAA
ATAAAAAATCCAGCGGACTTTCGATTAGGAACCAAAAGAAAACATCTCAATCCGATAAAA
TTAACAAAGTAGAAGAGAGAGGGAATTATTCGTGTATACTCAATGATAACCTCAGCGAAC
CTAAGTGGATTATGCAGCAACAATCAACAGTAGGCCGTACATCTGATAGGATTAGGAAAG
TCCCCGACAGAAAACCCCGAAAATAAGAAATGGTACGATTCAGCAGCAATTCCTTTCATG
GATGACGTCCATTCATCGATGTACAACCTGCACACAGATCAACGTAAGAATCAACAAATA
TGATTAGATGTATATAGTTTCAGTGTGTAAAGATAATTATTAATAACGTA

consensusID : consensus_5295#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [ATTGGAGACAACGATACTTTCTAGCATGCTGAGCACTAATGCCTTATGGACTGGAGAAGAGCAAGAGGGCTACGGTTATTATAGCCGACACGTTAGAAACAGTGATCACAATTGGGGTTACTATAGTTATTCTACTAACTTGTGAGAGATTGCGATCTAGAATCCGGCGGGCTTTCTATTAAGAGCCTGAAGATAGCGTCTCAATCCGATAAAGTTAACAGAGTATAACAGAGAGGGAATAATTACGAGTATACTCAATGATGACCTCAGCGAACCTAAGGGGATTATGCAGCAACACTCAACAGTAAGCCGTACATCTGATAGGATTAGGATAGTCCCGACGAGATACCCCGCATATAAGAAATGGTACGATTCAGCAGCAATTCCTTTCATGGATGACGTCCATTCATCGATGGACAACCTGCACACAGATCAACGTAAG]

[+] EMBL CD136940             [ATTGGAGACAACGATACTTTCTAGCATGCTGAGCACTAATGCCTTATGGACTGGAGAAGAGCAAGAGGGCTACGGTTATTATAGCCGACACGTTAGAAACAGTGATCACAATTGGGGTTACTATAGTTATTCTACTAACTTGTGAGAGATTGCGATCTAGAATCCGGCGGGCTTTCTATTAAGAGCCTGAAGATAGCGTCTCAATCCGATAAAGTTAACAGAGTATAACAGAGAGGGAATAATTACGAGTATACTCAATGATGACCTCAGCGAACCTAAGGGGATTATGCAGCAACACTCAACAGTAAGCCGTACATCTGATAGGATTAGGATAGTCCCGACGAGATACCCCGCATATAAGAAATGGTACGATTCAGCAGCAATTCCTTTCATGGATGACGTCCATTCATCGATGGACAACCTGCACACAGATCAACGTAAG]




>consensus_5295#1
ATTGGAGACAACGATACTTTCTAGCATGCTGAGCACTAATGCCTTATGGACTGGAGAAGA
GCAAGAGGGCTACGGTTATTATAGCCGACACGTTAGAAACAGTGATCACAATTGGGGTTA
CTATAGTTATTCTACTAACTTGTGAGAGATTGCGATCTAGAATCCGGCGGGCTTTCTATT
AAGAGCCTGAAGATAGCGTCTCAATCCGATAAAGTTAACAGAGTATAACAGAGAGGGAAT
AATTACGAGTATACTCAATGATGACCTCAGCGAACCTAAGGGGATTATGCAGCAACACTC
AACAGTAAGCCGTACATCTGATAGGATTAGGATAGTCCCGACGAGATACCCCGCATATAA
GAAATGGTACGATTCAGCAGCAATTCCTTTCATGGATGACGTCCATTCATCGATGGACAA
CCTGCACACAGATCAACGTAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5295#0      CAGAATTGTATCTGGCAGACATCCAATTACAATAATAATAATAATAATTAATAGAAAAAT 60
consensus_5295#1      ------------------------------------------------------------
                                                                                  

consensus_5295#0      AAGCATTATCAGTCTTTCTTTTTCCTTCTTTGAACAGTTATTCCATTCAATGTTCAATGT 120
consensus_5295#1      ------------------------------------------------------------
                                                                                  

consensus_5295#0      TTTATAATTGATTGATAGTTATTTCTAATAACAATTTTTTTTATTTGTTTATAACAACAA 180
consensus_5295#1      ------------------------------------------------------------
                                                                                  

consensus_5295#0      TGGAAAATGTAAGTATGGATAGTAAATTGAAAATGATAAATACAAATAATATTCATAATA 240
consensus_5295#1      ------------------------------------------------------------
                                                                                  

consensus_5295#0      ACATGACAACTTCAATACAACAAGTAATGGAAACAACAGAAAATAATAATATGATGAGTA 300
consensus_5295#1      -------------------------ATTGGAGACAACGATACTTTCTAGCATGCTGAGCA 35
                                               * **** *****   *  *  **  *** **** *

consensus_5295#0      CTAATGCCTTATGGACTGAAAAAGAACAA-AGGGCTACAGTTATTATAGTCGTAGCGTTA 359
consensus_5295#1      CTAATGCCTTATGGACTGGAGAAGAGCAAGAGGGCTACGGTTATTATAGCCGACACGTTA 95
                      ****************** * **** *** ******** ********** **   *****

consensus_5295#0      GTAACAATTATCACAATTTGTGTAATTTTAATTATTCTACGAACATTGAGAAAGAAATCA 419
consensus_5295#1      GAAACAGTGATCACAATTGGGGTTACTATAGTTATTCTACTAAC-TTGTGAGAGATTGCG 154
                      * **** * ********* * ** * * ** ********* *** *** ** ***   * 

consensus_5295#0      AATAAAAAATCCAGCGGACTTTCGATTAGGAACCAAAAGAAAACATCTCAATCCGATAAA 479
consensus_5295#1      A-TCTAGAATCCGGCGGGCTTTCTATTAAGAGCCTGAAGATAGCGTCTCAATCCGATAAA 213
                      * *  * ***** **** ***** **** ** **  **** * * ***************

consensus_5295#0      ATTAACAAAGTAGAAGAGAGAGGGAATTATT-CGTGTATACTCAATGATAACCTCAGCGA 538
consensus_5295#1      GTTAACAGAGTATAACAGAGAGGGAATAATTACGAGTATACTCAATGATGACCTCAGCGA 273
                       ****** **** ** *********** *** ** ************** **********

consensus_5295#0      ACCTAAGTGGATTATGCAGCAACAATCAACAGTAGGCCGTACATCTGATAGGATTAGGAA 598
consensus_5295#1      ACCTAAGGGGATTATGCAGCAACACTCAACAGTAAGCCGTACATCTGATAGGATTAGGAT 333
                      ******* **************** ********* ************************ 

consensus_5295#0      AGTCCCCGACAGAAAACCCCGAAAATAAGAAATGGTACGATTCAGCAGCAATTCCTTTCA 658
consensus_5295#1      AGTCCC-GACGAGATACCCCGCATATAAGAAATGGTACGATTCAGCAGCAATTCCTTTCA 392
                      ****** ***   * ****** * ************************************

consensus_5295#0      TGGATGACGTCCATTCATCGATGTACAACCTGCACACAGATCAACGTAAGAATCAACAAA 718
consensus_5295#1      TGGATGACGTCCATTCATCGATGGACAACCTGCACACAGATCAACGTAAG---------- 442
                      *********************** **************************          

consensus_5295#0      TATGATTAGATGTATATAGTTTCAGTGTGTAAAGATAATTATTAATAACGTA 770
consensus_5295#1      ----------------------------------------------------