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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5297#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 763 fasta sequence
[ATTGAGTTAGAAGATATCGTGGGTAATGAGAATACTATTTGTCGTCTATCCGTTTTCGCTCGTGACGGCAACTTACCGAACATCATAATAGCTGGTCCTCCAGGTTGTGGAAAAACCACAAGTATCTTATGCTTGGCTCGTACTCTGCTGAAGAGTGCTTATAAGGAAGCGGTCCTTGAGTTAAATGCATCGAACGAAAGGGGTATCGAAGTAGTAAGAACTAAAATCAAAATGTTCGCCCAGAAAAAGGTCAGTCTTCCCGAAGGAAGGCAAAAGATAATTATCCTCGATGAAGCCGACAGCATGACTGAAGGTGCTCAACAGGCACTTCGACGGATCATGGAGTTATACTCTCGAACAACTCGTTTTGCATTGGCTTGTAATGATTCCTCAAAGCTCATCGAACCAATACAATCAAGATGTGCTGTTTTACGTTATGCTCGTTTAACATCTGCCCAAGTAATGGCTAGATTACTAGAAGTTTCGCGTTTCG-AGGTGTTTCATATACAGAAGAAGGTTTGGAAGCCATTGTGTTCACAGCGGACGGTGACATGAGACAGGCTCTAAATAATCTACAATCAACTCATGAAGGCTTTGGGATGGTCAGTAGCGATAACGTCTTTAAAGTTTGTGATGAACCTCACCCAATGCTTATTAAACAGTTGATCGACCATTGTTCTAAGGGTGAATTGTCAGCTGCTCACAAGATCTTGCGTCATTTATGGACTTTGGGGTATTCAGCTGAAGATATTATCAACATCAC]
[+] EMBL AI977744 [ATTGAGTTAGAAGATATCGTGGGTAATGAGAATACTATTTGTCGTCTATCCGTTTTCGCTCGTGACGGCAACTTACCGAACATCATAATAGCTGGTCCTCCAGGTTGTGGAAAAACCACAAGTATCTTATGCTTGGCTCGTACTCTGCTGAAGAGTGCTTATAAGGAAGCGGTCCTTGAGTTAAATGCATCGAACGAAAGGGGTATCGAAGTAGTAAGAACTAAAATCAAAATGTTCGCCCAGAAAAAGGTCAGTCTTCCCGAAGGAAGGCAAAAGATAATTATCCTCGATGAAGCCGACAGCATGACTGAAGGTGCTCAACAGGCACTTCGACGGATCATGGAGTTATACTCTCGAACAACTCGTTTTGCATTGGCTTGTAATGATTCCTCAAAGCTCATCGAACCAATACAATCAAGATGTGCTGTTTTACGTTATGCTCGTTTAACATCTGCCCAAGTAATGGCTAGATTACTAGAAGTTTCGCGTTTCG AGGTGTTTCATATACAGAAGAAGGTTTGGAAGCCATTGTGTTCACAGCGGACGGTG ]
[+] EMBL CD138695 [ AGTTATACTCTCGAACAACTCGTTTTGCATTGGCTTGTAATGATTCCTCAAAGCTCATCGAACCAATACAATCAAGATGTGCTGTTTTACGTTATGCTCGTTTAACATCTGCCCAAGTAATGGCTAGATTACTAGAAGTTTCGCGTTTCGAAGGTGTTTCATATACAGAAGAAGGTTTGGAAGCCATTGTGTTCACAGCGGACGGTGACATGAGACAGGCTCTAAATAATCTACAATCAACTCATGAAGGCTTTGGGATGGTCAGTAGCGATAACGTCTTTAAAGTTTGTGATGAACCTCACCCAATGCTTATTAAACAGTTGATCGACCATTGTTCTAAGGGTGAATTGTCAGCTGCTCACAAGATCTTGCGTCATTTATGGACTTTGGGGTATTCAGCTGAAGATATTATCAACATCAC]
consensusID : consensus_5297#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence
[GTCTTCCCGAAGGAAGGCAAAAGATAATTATCCTCGATGAAGCCGACAGGTTAGTTGTTTATTCTATATGAGACTTTGCAGACATTGAAGCTTTAATCCCATAGTATTGGTGGTGACTACCTAAACCCATTGTGTTTTCTTTGTTACGTTGACTACTTTTTCGTATTTAATAGTAATACAGACCCATCGAATAGCCCGTTCTTACTAATTAATAGTGTCCCTGAGCTTTGGTTAACAGCCGCCACTTATAGTTAGTGTTACTTTATCTCTACCATAGTACGCCTGACGCGATTGTGGTCACTTCTACTCTCGCATTCCGTACAAGTCAGAATAAACCAAGTTAATTCTCTGCAACCTATCATCATCAGTATTACCAAACTTTAAGTATTTAGTCTGCAATTCTTGTCTTGTCTTTTTTGGTTGCAAAAACTTGGCCAGTAGCTGGCAGGAAAAAAG]
[+] EMBL AW017230 [GTCTTCCCGAAGGAAGGCAAAAGATAATTATCCTCGATGAAGCCGACAGGTTAGTTGTTTATTCTATATGAGACTTTGCAGACATTGAAGCTTTAATCCCATAGTATTGGTGGTGACTACCTAAACCCATTGTGTTTTCTTTGTTACGTTGACTACTTTTTCGTATTTAATAGTAATACAGACCCATCGAATAGCCCGTTCTTACTAATTAATAGTGTCCCTGAGCTTTGGTTAACAGCCGCCACTTATAGTTAGTGTTACTTTATCTCTACCATAGTACGCCTGACGCGATTGTGGTCACTTCTACTCTCGCATTCCGTACAAGTCAGAATAAACCAAGTTAATTCTCTGCAACCTATCATCATCAGTATTACCAAACTTTAAGTATTTAGTCTGCAATTCTTGTCTTGTCTTTTTTGGTTGCAAAAACTTGGCCAGTAGCTGGCAGGAAAAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5297#0 ATTGAGTTAGAAGATATCGTGGGTAATGAGAATACTATTTGTCGTCTATCCGTTTTCGCT 60
consensus_5297#1 ------------------------------------------------------------
consensus_5297#0 CGTGACGGCAACTTACCGAACATCATAATAGCTGGTCCTCCAGGTTGTGGAAAAACCACA 120
consensus_5297#1 ------------------------------------------------------------
consensus_5297#0 AGTATCTTATGCTTGGCTCGTACTCTGCTGAAGAGTGCTTATAAGGAAGCGGTCCTTGAG 180
consensus_5297#1 ------------------------------------------------------------
consensus_5297#0 TTAAATGCATCGAACGAAAGGGGTATCGAAGTAGTAAGAACTAAAATCAAAATGTTCGCC 240
consensus_5297#1 ------------------------------------------------------------
consensus_5297#0 CAGAAAAAGGTCAGTCTTCCCGAAGGAAGGCAAAAGATAATTATCCTCGATGAAGCCGAC 300
consensus_5297#1 -------------GTCTTCCCGAAGGAAGGCAAAAGATAATTATCCTCGATGAAGCCGAC 47
***********************************************
consensus_5297#0 AGCATGACTGAAGGTGCTCAACAGGCACTTCGACGGATCATGGAGTTATACTCTCGAACA 360
consensus_5297#1 AGGTTAGTTGTTTATTCTATATGAG-ACTTTG-CAGACATTGAAGCTTTAATCCCATA-- 103
** * ** * ** * * **** * * ** ** ** * ** ** * *
consensus_5297#0 ACTCGTTTTGCATTGGCTTGTAATGATTCCTCAAAGCTCATCGAACCAATACAATCAAGA 420
consensus_5297#1 ---------GTATTGG----TGGTGACTACCTAAA-CCCAT------------------- 130
* ***** * *** * * *** * ***
consensus_5297#0 TGTGCTGTTTTACGTTATGCTCGTTTAACATCTGCCCAAGTAATGGCTAGATTACTAGAA 480
consensus_5297#1 TGTGTT-TTCTTTGTTACGTTGACT--ACTTTTTCGTATTTAATAGTAATAC----AGAC 183
**** * ** * **** * * * ** * * * * **** * * * ***
consensus_5297#0 GTTTCGCGTTTCGAGGTGTTTCATATACAGAAGAAGGTTTGGAAGCCATTGTGTTCACAG 540
consensus_5297#1 CCATCGAATAGCCCGTTCTTACTAAT---TAATAGTGTCCCTGAGC--TTTGGTTAACAG 238
*** * * * * ** * ** ** * ** *** ** *** ****
consensus_5297#0 CGGACGGTGACA-TGAGACAGGCTCTAAATAATCTACAATCAACTCATGAAGGCTTTGGG 599
consensus_5297#1 CCGCCACTTATAGTTAGTGTTACTTTATCTCTACCATAGT--ACGCCTGACGCGATTGTG 296
* * * * * * * ** ** ** * * * * * ** * *** * *** *
consensus_5297#0 ATGGTCAGTAGCGATAACGTCTTTAAAGTTTGTGATGAACCTCACCCAATGCTTATTAAA 659
consensus_5297#1 GTCACTTCTACTCTCGCATTCCGTACAAGTCAGAATAAACCA-AGTTAATTCTCTGCAAC 355
* ** ** ** * * ** **** * *** ** **
consensus_5297#0 CAGTTGATCGACCATTGTTCTAAGGGTGAATTGTCAGCTGCTCACAAGATCTTGCGTCAT 719
consensus_5297#1 CTATC-ATCATCAGTATTACCAAACTTTAAGTATTTAGTCTGCAATTCTTGTCTTGTCTT 414
* * *** * * * * ** * ** * * * ** * * *** *
consensus_5297#0 TTATGGACTTTGGGGTATTCAGCTGAAGATATTATCAACATCAC 763
consensus_5297#1 TTTTGG-TTGCAAAAACTTGGCCAGTAGCTGGCAGGAAAAAAG- 456
** *** * ** * * ** * * ** *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||