cluster # 53

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 53 cluster # 53 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_53#0 length = 334 sequences # 1

consensus_53#1 length = 315 sequences # 1

consensusID : consensus_53#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 334
fasta sequence

                              [TTTTTTTTTTTGCACTGAGAACTAATTTTATTCTTGATACTACTCATGGAATCAATATAAATGAATAATTAATACTTGAGAAACATTTTCCATACAGGATATTAAATTAGTTTAATATTTCACATCATGAAATGTTTATGTTTCAAAGTACTAACAAAAGTATGGCATTTTTAAGAATACAAGATAATGGTTAAGAAATAATGGTCAATGGGGCCGGCTCCATAGTTAGTTAATTTCGGATAACCAAGAACTATAGCCAGTAGGGCCATGCAACCATGCGTTCCATACTCCGCTTGACGGAAGTAAGCTGCTCGAGGGTCAGATTCAAATTTGG]

[+] EMBL AI395696             [TTTTTTTTTTTGCACTGAGAACTAATTTTATTCTTGATACTACTCATGGAATCAATATAAATGAATAATTAATACTTGAGAAACATTTTCCATACAGGATATTAAATTAGTTTAATATTTCACATCATGAAATGTTTATGTTTCAAAGTACTAACAAAAGTATGGCATTTTTAAGAATACAAGATAATGGTTAAGAAATAATGGTCAATGGGGCCGGCTCCATAGTTAGTTAATTTCGGATAACCAAGAACTATAGCCAGTAGGGCCATGCAACCATGCGTTCCATACTCCGCTTGACGGAAGTAAGCTGCTCGAGGGTCAGATTCAAATTTGG]




>consensus_53#0
TTTTTTTTTTTGCACTGAGAACTAATTTTATTCTTGATACTACTCATGGAATCAATATAA
ATGAATAATTAATACTTGAGAAACATTTTCCATACAGGATATTAAATTAGTTTAATATTT
CACATCATGAAATGTTTATGTTTCAAAGTACTAACAAAAGTATGGCATTTTTAAGAATAC
AAGATAATGGTTAAGAAATAATGGTCAATGGGGCCGGCTCCATAGTTAGTTAATTTCGGA
TAACCAAGAACTATAGCCAGTAGGGCCATGCAACCATGCGTTCCATACTCCGCTTGACGG
AAGTAAGCTGCTCGAGGGTCAGATTCAAATTTGG

consensusID : consensus_53#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 315
fasta sequence

                              [TTTTTTTTTTCACTGAGAACTAATTTTATTCTTGATACTACTCATGGAATCAATATAAAAAAATAATTAATACTTGAGAAACATTTTCCATACAGAATATTAAATTAGTTTAATATTTCACATCATGAAATGTTTATGTATCAAAGTAATAAACAAAATAATGACATTTTTAATATACCAAAATAATGTTTAAGAAATATTGTTCATTGTGACTGAATCATAATTAGTTCATTTCTGATTAGCCAGCACTATAGCCAGGAGGGCCATGCGAACATGCGTTCAAACTCCGCTTGACGGAAGTAACCGGCTCAAGGG]

[+] EMBL AI394931             [TTTTTTTTTTCACTGAGAACTAATTTTATTCTTGATACTACTCATGGAATCAATATAAAAAAATAATTAATACTTGAGAAACATTTTCCATACAGAATATTAAATTAGTTTAATATTTCACATCATGAAATGTTTATGTATCAAAGTAATAAACAAAATAATGACATTTTTAATATACCAAAATAATGTTTAAGAAATATTGTTCATTGTGACTGAATCATAATTAGTTCATTTCTGATTAGCCAGCACTATAGCCAGGAGGGCCATGCGAACATGCGTTCAAACTCCGCTTGACGGAAGTAACCGGCTCAAGGG]




>consensus_53#1
TTTTTTTTTTCACTGAGAACTAATTTTATTCTTGATACTACTCATGGAATCAATATAAAA
AAATAATTAATACTTGAGAAACATTTTCCATACAGAATATTAAATTAGTTTAATATTTCA
CATCATGAAATGTTTATGTATCAAAGTAATAAACAAAATAATGACATTTTTAATATACCA
AAATAATGTTTAAGAAATATTGTTCATTGTGACTGAATCATAATTAGTTCATTTCTGATT
AGCCAGCACTATAGCCAGGAGGGCCATGCGAACATGCGTTCAAACTCCGCTTGACGGAAG
TAACCGGCTCAAGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_53#0      TTTTTTTTTTTGCACTGAGAACTAATTTTATTCTTGATACTACTCATGGAATCAATATAA 60
consensus_53#1      --TTTTTTTTTTCACTGAGAACTAATTTTATTCTTGATACTACTCATGGAATCAATATAA 58
                      ********* ************************************************

consensus_53#0      ATGAATAATTAATACTTGAGAAACATTTTCCATACAGGATATTAAATTAGTTTAATATTT 120
consensus_53#1      AAAAATAATTAATACTTGAGAAACATTTTCCATACAGAATATTAAATTAGTTTAATATTT 118
                    *  ********************************** **********************

consensus_53#0      CACATCATGAAATGTTTATGTTTCAAAGTACTAA-CAAAAGTATGGCATTTTTAAGAATA 179
consensus_53#1      CACATCATGAAATGTTTATGTATCAAAGTAATAAACAAAATAATGACATTTTTAATATAC 178
                    ********************* ******** *** *****  *** ********* *   

consensus_53#0      CAAGATAATGGTTAAGAAATAATGGTCAATGGGGCCGGCTCCATAGTTAGTTAATTTCGG 239
consensus_53#1      CAAAATAATGTTTAAGAAATATTGTTCATTGTGACTGAATC-ATAATTAGTTCATTTCTG 237
                    *** ****** ********** ** *** ** * * *  ** *** ****** ***** *

consensus_53#0      ATAACCAAGAACTATAGCCAGTAGGGCCATGCAACCATGCGTTCCATACTCCGCTTGACG 299
consensus_53#1      ATTAGCCAGCACTATAGCCAGGAGGGCCATGCGAACATGCGTTC-AAACTCCGCTTGACG 296
                    ** * * ** *********** ********** * ********* * *************

consensus_53#0      GAAGTAAGCTGCTCGAGGGTCAGATTCAAATTTGG 334
consensus_53#1      GAAGTAACCGGCTCAAGGG---------------- 315
                    ******* * **** ****