cluster # 5306

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Schistosoma mansoni
cluster # 5306 cluster # 5306 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5306#0 length = 358 sequences # 2

consensus_5306#1 length = 256 sequences # 1

consensusID : consensus_5306#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 358
fasta sequence

                              [TTTTGCGCCACACAAAAGGTCGTTTAGTTTAGGGTAAGAGGCGGATCTTCCTGGAATTTATGTTCAAGCGGATTAACTGATGTTGCCAGCGTTTTTCGCCAGGCTGATTATAACTGTTTTTGGAGTTATGCACCCTTCTTACAGAACTTATAAAGCCATTAAGAGGAAAGATTATCAGGAAGTGGTGACACTTGGCATGTACTGGGTAGTGTTCAGCCTGTATATAACTGTGGAGCTGGTGACGGATATTCTACTTCAGTGGCTTCCTTTTTACTACGAGGCGAAGACTCTATTTGTCATATGGCTTGTCACCCCAGCCACTTCTGGGTATAGTTTTATATACCGAAAAGTAATCCAC]

[-] EMBL CD097617             [TTTTGCGCCACACAAAAGGTCGTTTAGTTTAGGGTAAGAGGCGGATCTTCCTGGAATTTATGTTCAAGCGGATTAACTGATGTTGCCAGCGTTTTTCGCCAGGCTGATTATAACTGTTTTTGGAGTTATGCACCCTTCTTACAGAACTTATAAAGCCATTAAGAGGAAAGATTATCAGGAAGTGGTGACACTTGGCATGTACTGGGTAGTGTTCAGCCTGTATATAACTGTGGAGCTGGTGACGGATATTCTACTTCAGTGGCTTCCTTTTTACTACGAGGCGAAGACTCTATTTGTCATATGGCTTGTCACCC                                            ]
[+] EMBL CD133361             [                  GTCGTTTAGTTTAGGGTAAGAGGCGGATCTTCCTGGAATTTATGTTCAAGCGGATTAACTGATGTTGCCAGCGTTTTTCGCCAGGCTGATTATAACTGTTTTTGGAGTTATGCACCCTTCTTACAGAACTTATAAAGCCATTAAGAGGAAAGATTATCAGGAAGTGGTGACACTTGGCATGTACTGGGTAGTGTTCAGCCTGTATATAACTGTGGAGCTGGTGACGGATATTCTACTTCAGTGGCTTCCTTTTTACTACGAGGCGAAGACTCTATTTGTCATATGGCTTGTCACCCCAGCCACTTCTGGGTATAGTTTTATATACCGAAAAGTAATCCAC]




>consensus_5306#0
TTTTGCGCCACACAAAAGGTCGTTTAGTTTAGGGTAAGAGGCGGATCTTCCTGGAATTTA
TGTTCAAGCGGATTAACTGATGTTGCCAGCGTTTTTCGCCAGGCTGATTATAACTGTTTT
TGGAGTTATGCACCCTTCTTACAGAACTTATAAAGCCATTAAGAGGAAAGATTATCAGGA
AGTGGTGACACTTGGCATGTACTGGGTAGTGTTCAGCCTGTATATAACTGTGGAGCTGGT
GACGGATATTCTACTTCAGTGGCTTCCTTTTTACTACGAGGCGAAGACTCTATTTGTCAT
ATGGCTTGTCACCCCAGCCACTTCTGGGTATAGTTTTATATACCGAAAAGTAATCCAC

consensusID : consensus_5306#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 256
fasta sequence

                              [GAGGCAAGAATTCGGCACGAGGGTTCAAGCGGATTAACTGATGTTGCCAGCGTTTTTCGCCAGGCTGATTATAACTGTTTTTGGAGTTATGCACCCTTCTTACAGAACTTATAAAGCCATTAAGAGGAAAGATTATCAGGAAGTGGTGACACTTGGCATGTACTGGGTAGTGTTCAGCCTGTATATAACTGTGGAGCTGGTGACGGATATTCTACTTCAGTGGCTTCCTTCTTACTACGAGGCGAAGACTCTATNT]

[+] EMBL CD077595             [GAGGCAAGAATTCGGCACGAGGGTTCAAGCGGATTAACTGATGTTGCCAGCGTTTTTCGCCAGGCTGATTATAACTGTTTTTGGAGTTATGCACCCTTCTTACAGAACTTATAAAGCCATTAAGAGGAAAGATTATCAGGAAGTGGTGACACTTGGCATGTACTGGGTAGTGTTCAGCCTGTATATAACTGTGGAGCTGGTGACGGATATTCTACTTCAGTGGCTTCCTTCTTACTACGAGGCGAAGACTCTATNT]




>consensus_5306#1
GAGGCAAGAATTCGGCACGAGGGTTCAAGCGGATTAACTGATGTTGCCAGCGTTTTTCGC
CAGGCTGATTATAACTGTTTTTGGAGTTATGCACCCTTCTTACAGAACTTATAAAGCCAT
TAAGAGGAAAGATTATCAGGAAGTGGTGACACTTGGCATGTACTGGGTAGTGTTCAGCCT
GTATATAACTGTGGAGCTGGTGACGGATATTCTACTTCAGTGGCTTCCTTCTTACTACGA
GGCGAAGACTCTATNT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5306#0      TTTTGCGCCACACAAAAGGTCGTTTAGTTTAGGGTAAGAGGCGGATCTTCCTGGAATTTA 60
consensus_5306#1      -------------------------------------GAGGCAAGAATTC--GGCACGAG 21
                                                           *****     ***  ** *    

consensus_5306#0      TGTTCAAGCGGATTAACTGATGTTGCCAGCGTTTTTCGCCAGGCTGATTATAACTGTTTT 120
consensus_5306#1      GGTTCAAGCGGATTAACTGATGTTGCCAGCGTTTTTCGCCAGGCTGATTATAACTGTTTT 81
                       ***********************************************************

consensus_5306#0      TGGAGTTATGCACCCTTCTTACAGAACTTATAAAGCCATTAAGAGGAAAGATTATCAGGA 180
consensus_5306#1      TGGAGTTATGCACCCTTCTTACAGAACTTATAAAGCCATTAAGAGGAAAGATTATCAGGA 141
                      ************************************************************

consensus_5306#0      AGTGGTGACACTTGGCATGTACTGGGTAGTGTTCAGCCTGTATATAACTGTGGAGCTGGT 240
consensus_5306#1      AGTGGTGACACTTGGCATGTACTGGGTAGTGTTCAGCCTGTATATAACTGTGGAGCTGGT 201
                      ************************************************************

consensus_5306#0      GACGGATATTCTACTTCAGTGGCTTCCTTTTTACTACGAGGCGAAGACTCTATTTGTCAT 300
consensus_5306#1      GACGGATATTCTACTTCAGTGGCTTCCTTCTTACTACGAGGCGAAGACTCTATNT----- 256
                      ***************************** *********************** *     

consensus_5306#0      ATGGCTTGTCACCCCAGCCACTTCTGGGTATAGTTTTATATACCGAAAAGTAATCCAC 358
consensus_5306#1      ----------------------------------------------------------