cluster # 5307

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Schistosoma mansoni
cluster # 5307 cluster # 5307 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5307#0 length = 517 sequences # 2

consensus_5307#1 length = 506 sequences # 1

consensusID : consensus_5307#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 517
fasta sequence

                              [AGTATTTTTTCCAGCATGAACAATGATGAAATTGAACACTGATAAGAAAACTATACTATTCACTAAGATTCATTGCCTTATATAACTAGGGATTGTGATCAATGTTTACAATGCTCATTTTCCACGTTCGAGATCCATTAAAAATACGAATCTCATACATTTTTAGTCTAACCCAGAACCGATAGAGAGAAAAAAACCTGTTTAGAAAGTCAAGTAAGTAAGTAATTTGATTGAATAGATGAATGCTCTATAATTAACACAACAAACTAGACTCAATAGGATTATCTCCAAAAAAATAATCCAAACTACATACATACATACAACATACACACACACACATACACACACACTGTTGAACTATATCTCTACGTATTCAATGAAACAATTAAAATACAAACTATAATATTTTGAATATTTTAAAACAAAAATTACAAAAAAAAGTTTTTTTAAAAAGAAAAACAATCAAANCAAAAAAAACTGAGAACACTTATGTGCTNAAAGGCACTTTCTGATGTTG]

[+] EMBL CD113852             [AGTATTTTTTCCAGCATGAACAATGATGAAATTGAACACTGATAAGAAAACTATACTATTCACTAAGATTCATTGCCTTATATAACTAGGGATTGTGATCAATGTTTACAATGCTCATTTTCCACGTTCGAGATCCATTAAAAATACGAATCTCATACATTTTTAGTCTAACCCAGAACCGATAGAGAGAAAAAAACCTGTTTAGAAAGTCAAGTAAGTAAGTAATTTGATTGAATAGATGAATGCTCTATAATTAACACAACAAACTAGACTCAATAGGATTATCTCCAAAAAAATAATCCAAACTACATACATACATACAACATACACACACACACATACACACACACTGTTGAACTATATCTCTACGTATTCAATGAAACAATTAAAATACAAACTATAATATTTTGAATATTTTAAAACAAAAATTACAAAAAAAAGTTTTTTTAAAAAGAAAAACAATCAAANCAAAAAAAACTGAGAACACTTATGTGCTNAAAGGCACTTTCTGATGTTG]
[+] EMBL CD113851             [AGTATTTTTTCCAGCATGAACAATGATGAAATTGAACACTGATAAGAAAACTATACTATTCACTAAGATTCATTGCCTTATATAACTAGGGATTGTGATCAATGTTTACAATGCTCATTTTCCACGTTCGAGATCCATTAAAAATACGAATCTCATACATTTTTAGTCTAACCCAGAACCGATAGAGAGAAAAAAACCTGTTTAGAAAGTCAAGTAAGTAAGTAATTTGATTGAATAGATGAATGCTCTATAATTAACACAACAAACTAGACTCAATAGGATTATCTCCAAAAAAATAATCCAAACTACATACATACATACAAAATACACACACACACATACACACACACTGTTGAACTATATCTCTACGTATTCAATGAAACAATTAAAATACAAACTATAATATTTTGAATATTTTAAAACAAAAATTACAAAAAAAAGTTTTTTTAAAAAGAAAAACAATCAAANCAAAA                                            ]




>consensus_5307#0
AGTATTTTTTCCAGCATGAACAATGATGAAATTGAACACTGATAAGAAAACTATACTATT
CACTAAGATTCATTGCCTTATATAACTAGGGATTGTGATCAATGTTTACAATGCTCATTT
TCCACGTTCGAGATCCATTAAAAATACGAATCTCATACATTTTTAGTCTAACCCAGAACC
GATAGAGAGAAAAAAACCTGTTTAGAAAGTCAAGTAAGTAAGTAATTTGATTGAATAGAT
GAATGCTCTATAATTAACACAACAAACTAGACTCAATAGGATTATCTCCAAAAAAATAAT
CCAAACTACATACATACATACAACATACACACACACACATACACACACACTGTTGAACTA
TATCTCTACGTATTCAATGAAACAATTAAAATACAAACTATAATATTTTGAATATTTTAA
AACAAAAATTACAAAAAAAAGTTTTTTTAAAAAGAAAAACAATCAAANCAAAAAAAACTG
AGAACACTTATGTGCTNAAAGGCACTTTCTGATGTTG

consensusID : consensus_5307#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence

                              [TCCTAGCTGTAAACCTGTGATGAAATTGAACACTGATAAGAAAACTATACTATTCACTAAGATTCATTGCCTTATATAACTAGGGATTGTGATCAATGTTTACAATGCTCATTTTCCACGTTCGAGATCCATTAAAAATACGAATCTCATACATTTTTAGTCTAACCCAGAACCGATAGAGAGAAAAAAACCTGTTTAGAAAGTCAAGTAAGTAAGTAATTTGATTGAATAGATGAATGCTCTATAATTAACACGACAAACTAGACTCAATAGGATTATCTCCAAAAAAATAATCCAAACTACATACATACATACAACATACACACACACACATACACACACACACTGTTGAACTATATCTCTACGTATTCAATGAAACAATTAAAATACAAACTATAATATTTTGAATATTTTAAAACAAAAATTACAAAAAAAAGTTTCTTTAACAAGAAAAACAATCAAACCAAAAAAAACTGAGAACACTTATGTGCTAAAGGCCACTTTCT]

[+] EMBL CD113869             [TCCTAGCTGTAAACCTGTGATGAAATTGAACACTGATAAGAAAACTATACTATTCACTAAGATTCATTGCCTTATATAACTAGGGATTGTGATCAATGTTTACAATGCTCATTTTCCACGTTCGAGATCCATTAAAAATACGAATCTCATACATTTTTAGTCTAACCCAGAACCGATAGAGAGAAAAAAACCTGTTTAGAAAGTCAAGTAAGTAAGTAATTTGATTGAATAGATGAATGCTCTATAATTAACACGACAAACTAGACTCAATAGGATTATCTCCAAAAAAATAATCCAAACTACATACATACATACAACATACACACACACACATACACACACACACTGTTGAACTATATCTCTACGTATTCAATGAAACAATTAAAATACAAACTATAATATTTTGAATATTTTAAAACAAAAATTACAAAAAAAAGTTTCTTTAACAAGAAAAACAATCAAACCAAAAAAAACTGAGAACACTTATGTGCTAAAGGCCACTTTCT]




>consensus_5307#1
TCCTAGCTGTAAACCTGTGATGAAATTGAACACTGATAAGAAAACTATACTATTCACTAA
GATTCATTGCCTTATATAACTAGGGATTGTGATCAATGTTTACAATGCTCATTTTCCACG
TTCGAGATCCATTAAAAATACGAATCTCATACATTTTTAGTCTAACCCAGAACCGATAGA
GAGAAAAAAACCTGTTTAGAAAGTCAAGTAAGTAAGTAATTTGATTGAATAGATGAATGC
TCTATAATTAACACGACAAACTAGACTCAATAGGATTATCTCCAAAAAAATAATCCAAAC
TACATACATACATACAACATACACACACACACATACACACACACACTGTTGAACTATATC
TCTACGTATTCAATGAAACAATTAAAATACAAACTATAATATTTTGAATATTTTAAAACA
AAAATTACAAAAAAAAGTTTCTTTAACAAGAAAAACAATCAAACCAAAAAAAACTGAGAA
CACTTATGTGCTAAAGGCCACTTTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5307#0      AGTATTTTTTCCAGC-ATGAACA-ATGATGAAATTGAACACTGATAAGAAAACTATACTA 58
consensus_5307#1      --------TCCTAGCTGTAAACCTGTGATGAAATTGAACACTGATAAGAAAACTATACTA 52
                              * * ***  * ***   ***********************************

consensus_5307#0      TTCACTAAGATTCATTGCCTTATATAACTAGGGATTGTGATCAATGTTTACAATGCTCAT 118
consensus_5307#1      TTCACTAAGATTCATTGCCTTATATAACTAGGGATTGTGATCAATGTTTACAATGCTCAT 112
                      ************************************************************

consensus_5307#0      TTTCCACGTTCGAGATCCATTAAAAATACGAATCTCATACATTTTTAGTCTAACCCAGAA 178
consensus_5307#1      TTTCCACGTTCGAGATCCATTAAAAATACGAATCTCATACATTTTTAGTCTAACCCAGAA 172
                      ************************************************************

consensus_5307#0      CCGATAGAGAGAAAAAAACCTGTTTAGAAAGTCAAGTAAGTAAGTAATTTGATTGAATAG 238
consensus_5307#1      CCGATAGAGAGAAAAAAACCTGTTTAGAAAGTCAAGTAAGTAAGTAATTTGATTGAATAG 232
                      ************************************************************

consensus_5307#0      ATGAATGCTCTATAATTAACACAACAAACTAGACTCAATAGGATTATCTCCAAAAAAATA 298
consensus_5307#1      ATGAATGCTCTATAATTAACACGACAAACTAGACTCAATAGGATTATCTCCAAAAAAATA 292
                      ********************** *************************************

consensus_5307#0      ATCCAAACTACATACATACATACAACATACACACACACACATACACACACAC--TGTTGA 356
consensus_5307#1      ATCCAAACTACATACATACATACAACATACACACACACACATACACACACACACTGTTGA 352
                      ****************************************************  ******

consensus_5307#0      ACTATATCTCTACGTATTCAATGAAACAATTAAAATACAAACTATAATATTTTGAATATT 416
consensus_5307#1      ACTATATCTCTACGTATTCAATGAAACAATTAAAATACAAACTATAATATTTTGAATATT 412
                      ************************************************************

consensus_5307#0      TTAAAACAAAAATTACAAAAAAAAGTTTTTTTAAAAAGAAAAACAATCAAANCAAAAAAA 476
consensus_5307#1      TTAAAACAAAAATTACAAAAAAAAGTTTCTTTAACAAGAAAAACAATCAAACCAAAAAAA 472
                      **************************** ***** **************** ********

consensus_5307#0      ACTGAGAACACTTATGTGCTNAAAGGCACTTTCTGATGTTG 517
consensus_5307#1      ACTGAGAACACTTATGTGCTAAAGGCCACTTTCT------- 506
                      ******************** ** * ********