cluster # 5334

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Schistosoma mansoni
cluster # 5334 cluster # 5334 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5334#0 length = 304 sequences # 1

consensus_5334#1 length = 272 sequences # 2

consensusID : consensus_5334#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence

                              [TGCGGTAATACCGAGACCAACAAAAGCTCCACAAATATTCATCGAAACACAGTATCCCAAAGCAAGCACCGCCATTTTCCCTTGCACTGAAGGCTTCAGCTTAGACGACACTACACATAATAGACGTTTGGGAATTCTGCAGAACACAGAGATTACTTGACATTATATTCGTGGTTATCAGAGGGATAACAGCCAAATTTAATGACCTGATAAAAAGTTCCCCAGGTAGACCTATTATTGACTAACAGTTTACATATAATTACCTATCCATAATAAGACAGGTTCTGGGACGGTAAGAAAATTT]

[+] EMBL CD190080             [TGCGGTAATACCGAGACCAACAAAAGCTCCACAAATATTCATCGAAACACAGTATCCCAAAGCAAGCACCGCCATTTTCCCTTGCACTGAAGGCTTCAGCTTAGACGACACTACACATAATAGACGTTTGGGAATTCTGCAGAACACAGAGATTACTTGACATTATATTCGTGGTTATCAGAGGGATAACAGCCAAATTTAATGACCTGATAAAAAGTTCCCCAGGTAGACCTATTATTGACTAACAGTTTACATATAATTACCTATCCATAATAAGACAGGTTCTGGGACGGTAAGAAAATTT]




>consensus_5334#0
TGCGGTAATACCGAGACCAACAAAAGCTCCACAAATATTCATCGAAACACAGTATCCCAA
AGCAAGCACCGCCATTTTCCCTTGCACTGAAGGCTTCAGCTTAGACGACACTACACATAA
TAGACGTTTGGGAATTCTGCAGAACACAGAGATTACTTGACATTATATTCGTGGTTATCA
GAGGGATAACAGCCAAATTTAATGACCTGATAAAAAGTTCCCCAGGTAGACCTATTATTG
ACTAACAGTTTACATATAATTACCTATCCATAATAAGACAGGTTCTGGGACGGTAAGAAA
ATTT

consensusID : consensus_5334#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 272
fasta sequence

                              [GCGGTAATACCGAGACCAAGAAAAGCTCCACAAATATTCATCGAAACACAGTATCCCAAAGCAAGCACCGCCATTTTCCCTTGCACTGAAGGCTTCAGCTTAGACGACACTACACATAATAGACGTTTGGGAATTCTGCAGAACACAGAGATTACTTGACATTATATTCGTGGTTATCAGAGGGATAACAGCCAAATTTAATGACCTGATAAAAAGTTCCCCAGGTAGACCTATCCATAATAAGACAGGTTCTGGGACGGTAAGAAAATTTA]

[-] EMBL CD189569             [GCGGTAATACCGAGACCAAGAAAAGCTCCACAAATATTCATCGAAACACAGTATCCCAAAGCAAGCACCGCCATTTTCCCTTGCACTGAAGGCTTCAGCTTAGACGACACTACACATAATAGACGTTTGGGAATTCTGCAGAACACAGAGATTACTTGACATTATATTCGTGGTTATCAGAGGGATAACAGCCAAATTTAATGACCTGATAAAAAGTTCCCCAGGTAGACCTATCCATAATAAGACAGGTTCTGGGACGGTAAGAAAATTTA]
[-] EMBL CD183479             [GCGGTAATACCGAGACCAACAAAAGCTCCACAAATATTCATCGAAACACAGTATCCCAAAGCAAGCACCGCCATTTTCCCTTGCACTGAAGGCTTCAGCTTAGACGACACTACACATAATAGACGTTTGGGAATTCTGCAGAACACAGAGATTACTTGACAGTATATTCGTGGTTATCAGAGGGATAACAGCCAAATTTAATGACCTGATAAAAAGTTCCCCAGGTAGACCTATCCATAATAAGACAGGTTCTGGGACGGTAAGAAAATTTA]




>consensus_5334#1
GCGGTAATACCGAGACCAAGAAAAGCTCCACAAATATTCATCGAAACACAGTATCCCAAA
GCAAGCACCGCCATTTTCCCTTGCACTGAAGGCTTCAGCTTAGACGACACTACACATAAT
AGACGTTTGGGAATTCTGCAGAACACAGAGATTACTTGACATTATATTCGTGGTTATCAG
AGGGATAACAGCCAAATTTAATGACCTGATAAAAAGTTCCCCAGGTAGACCTATCCATAA
TAAGACAGGTTCTGGGACGGTAAGAAAATTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5334#0      TGCGGTAATACCGAGACCAACAAAAGCTCCACAAATATTCATCGAAACACAGTATCCCAA 60
consensus_5334#1      -GCGGTAATACCGAGACCAAGAAAAGCTCCACAAATATTCATCGAAACACAGTATCCCAA 59
                       ******************* ***************************************

consensus_5334#0      AGCAAGCACCGCCATTTTCCCTTGCACTGAAGGCTTCAGCTTAGACGACACTACACATAA 120
consensus_5334#1      AGCAAGCACCGCCATTTTCCCTTGCACTGAAGGCTTCAGCTTAGACGACACTACACATAA 119
                      ************************************************************

consensus_5334#0      TAGACGTTTGGGAATTCTGCAGAACACAGAGATTACTTGACATTATATTCGTGGTTATCA 180
consensus_5334#1      TAGACGTTTGGGAATTCTGCAGAACACAGAGATTACTTGACATTATATTCGTGGTTATCA 179
                      ************************************************************

consensus_5334#0      GAGGGATAACAGCCAAATTTAATGACCTGATAAAAAGTTCCCCAGGTAGACCTATTATTG 240
consensus_5334#1      GAGGGATAACAGCCAAATTTAATGACCTGATAAAAAGTTCCCCAGGTAGACCTA------ 233
                      ******************************************************      

consensus_5334#0      ACTAACAGTTTACATATAATTACCTATCCATAATAAGACAGGTTCTGGGACGGTAAGAAA 300
consensus_5334#1      --------------------------TCCATAATAAGACAGGTTCTGGGACGGTAAGAAA 267
                                                **********************************

consensus_5334#0      ATTT- 304
consensus_5334#1      ATTTA 272
                      ****