These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5334#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence [TGCGGTAATACCGAGACCAACAAAAGCTCCACAAATATTCATCGAAACACAGTATCCCAAAGCAAGCACCGCCATTTTCCCTTGCACTGAAGGCTTCAGCTTAGACGACACTACACATAATAGACGTTTGGGAATTCTGCAGAACACAGAGATTACTTGACATTATATTCGTGGTTATCAGAGGGATAACAGCCAAATTTAATGACCTGATAAAAAGTTCCCCAGGTAGACCTATTATTGACTAACAGTTTACATATAATTACCTATCCATAATAAGACAGGTTCTGGGACGGTAAGAAAATTT] [+] EMBL CD190080 [TGCGGTAATACCGAGACCAACAAAAGCTCCACAAATATTCATCGAAACACAGTATCCCAAAGCAAGCACCGCCATTTTCCCTTGCACTGAAGGCTTCAGCTTAGACGACACTACACATAATAGACGTTTGGGAATTCTGCAGAACACAGAGATTACTTGACATTATATTCGTGGTTATCAGAGGGATAACAGCCAAATTTAATGACCTGATAAAAAGTTCCCCAGGTAGACCTATTATTGACTAACAGTTTACATATAATTACCTATCCATAATAAGACAGGTTCTGGGACGGTAAGAAAATTT] consensusID : consensus_5334#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 272 fasta sequence [GCGGTAATACCGAGACCAAGAAAAGCTCCACAAATATTCATCGAAACACAGTATCCCAAAGCAAGCACCGCCATTTTCCCTTGCACTGAAGGCTTCAGCTTAGACGACACTACACATAATAGACGTTTGGGAATTCTGCAGAACACAGAGATTACTTGACATTATATTCGTGGTTATCAGAGGGATAACAGCCAAATTTAATGACCTGATAAAAAGTTCCCCAGGTAGACCTATCCATAATAAGACAGGTTCTGGGACGGTAAGAAAATTTA] [-] EMBL CD189569 [GCGGTAATACCGAGACCAAGAAAAGCTCCACAAATATTCATCGAAACACAGTATCCCAAAGCAAGCACCGCCATTTTCCCTTGCACTGAAGGCTTCAGCTTAGACGACACTACACATAATAGACGTTTGGGAATTCTGCAGAACACAGAGATTACTTGACATTATATTCGTGGTTATCAGAGGGATAACAGCCAAATTTAATGACCTGATAAAAAGTTCCCCAGGTAGACCTATCCATAATAAGACAGGTTCTGGGACGGTAAGAAAATTTA] [-] EMBL CD183479 [GCGGTAATACCGAGACCAACAAAAGCTCCACAAATATTCATCGAAACACAGTATCCCAAAGCAAGCACCGCCATTTTCCCTTGCACTGAAGGCTTCAGCTTAGACGACACTACACATAATAGACGTTTGGGAATTCTGCAGAACACAGAGATTACTTGACAGTATATTCGTGGTTATCAGAGGGATAACAGCCAAATTTAATGACCTGATAAAAAGTTCCCCAGGTAGACCTATCCATAATAAGACAGGTTCTGGGACGGTAAGAAAATTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5334#0 TGCGGTAATACCGAGACCAACAAAAGCTCCACAAATATTCATCGAAACACAGTATCCCAA 60 consensus_5334#1 -GCGGTAATACCGAGACCAAGAAAAGCTCCACAAATATTCATCGAAACACAGTATCCCAA 59 ******************* *************************************** consensus_5334#0 AGCAAGCACCGCCATTTTCCCTTGCACTGAAGGCTTCAGCTTAGACGACACTACACATAA 120 consensus_5334#1 AGCAAGCACCGCCATTTTCCCTTGCACTGAAGGCTTCAGCTTAGACGACACTACACATAA 119 ************************************************************ consensus_5334#0 TAGACGTTTGGGAATTCTGCAGAACACAGAGATTACTTGACATTATATTCGTGGTTATCA 180 consensus_5334#1 TAGACGTTTGGGAATTCTGCAGAACACAGAGATTACTTGACATTATATTCGTGGTTATCA 179 ************************************************************ consensus_5334#0 GAGGGATAACAGCCAAATTTAATGACCTGATAAAAAGTTCCCCAGGTAGACCTATTATTG 240 consensus_5334#1 GAGGGATAACAGCCAAATTTAATGACCTGATAAAAAGTTCCCCAGGTAGACCTA------ 233 ****************************************************** consensus_5334#0 ACTAACAGTTTACATATAATTACCTATCCATAATAAGACAGGTTCTGGGACGGTAAGAAA 300 consensus_5334#1 --------------------------TCCATAATAAGACAGGTTCTGGGACGGTAAGAAA 267 ********************************** consensus_5334#0 ATTT- 304 consensus_5334#1 ATTTA 272 **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||