cluster # 5338

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 5338 cluster # 5338 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5338#0 length = 630 sequences # 1

consensus_5338#1 length = 436 sequences # 1
consensus_5338#2 length = 187 sequences # 1

consensusID : consensus_5338#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 630
fasta sequence

                              [TCGNAGCCAANAATTCGGCACGAGGNAAAATCCATCCCAAACGTCTTCAGTTTACATAGTCCATACTTTCACCGTTATTCGTTATCGACTGTGATGCTTTTCTTGTGTTCTGTATTTTTGTTTATCTTTTCATGTTTAAATCTCTATGCTTATGTTCAATTAACTGATGAATTGTACGGACTGATTAAAATGTCTTAAATGTTATTCGTACATCGTTTATTTGTGATTCTTTCCATGTGAAATTGCTTATTTTTTGTTTCTACATTGTCTGTTTTATTTTGCTTTTCCTTCATTGTTGCTACATACTATGCTTTCCAAATAAGCATGCATGTCTTTCACTGCTTCGTATTTATTAAATTTAGTAGTATTTATCATTATCGTTGTTTCGTCCTGACAACATTCTAACCTTCCTCGTACGATTGTTTGTCAAGCCTAATTTATTTTATAATCGTTGTGGTCTTTGGGCAAATAATTTATTTCGAATTATTATATCTTGTTCCTGTTGTTTGTCTCTTAGATTCTTAAACTTTTGTATTTGTACCTGTCATAATGAATATCCTATAATCTTCCCCATGAAAGTAATTAACTACTTATATTTATTTTAGCGGAGATTATGATATTATTTAGAAT]

[+] EMBL CD080546             [TCGNAGCCAANAATTCGGCACGAGGNAAAATCCATCCCAAACGTCTTCAGTTTACATAGTCCATACTTTCACCGTTATTCGTTATCGACTGTGATGCTTTTCTTGTGTTCTGTATTTTTGTTTATCTTTTCATGTTTAAATCTCTATGCTTATGTTCAATTAACTGATGAATTGTACGGACTGATTAAAATGTCTTAAATGTTATTCGTACATCGTTTATTTGTGATTCTTTCCATGTGAAATTGCTTATTTTTTGTTTCTACATTGTCTGTTTTATTTTGCTTTTCCTTCATTGTTGCTACATACTATGCTTTCCAAATAAGCATGCATGTCTTTCACTGCTTCGTATTTATTAAATTTAGTAGTATTTATCATTATCGTTGTTTCGTCCTGACAACATTCTAACCTTCCTCGTACGATTGTTTGTCAAGCCTAATTTATTTTATAATCGTTGTGGTCTTTGGGCAAATAATTTATTTCGAATTATTATATCTTGTTCCTGTTGTTTGTCTCTTAGATTCTTAAACTTTTGTATTTGTACCTGTCATAATGAATATCCTATAATCTTCCCCATGAAAGTAATTAACTACTTATATTTATTTTAGCGGAGATTATGATATTATTTAGAAT]




>consensus_5338#0
TCGNAGCCAANAATTCGGCACGAGGNAAAATCCATCCCAAACGTCTTCAGTTTACATAGT
CCATACTTTCACCGTTATTCGTTATCGACTGTGATGCTTTTCTTGTGTTCTGTATTTTTG
TTTATCTTTTCATGTTTAAATCTCTATGCTTATGTTCAATTAACTGATGAATTGTACGGA
CTGATTAAAATGTCTTAAATGTTATTCGTACATCGTTTATTTGTGATTCTTTCCATGTGA
AATTGCTTATTTTTTGTTTCTACATTGTCTGTTTTATTTTGCTTTTCCTTCATTGTTGCT
ACATACTATGCTTTCCAAATAAGCATGCATGTCTTTCACTGCTTCGTATTTATTAAATTT
AGTAGTATTTATCATTATCGTTGTTTCGTCCTGACAACATTCTAACCTTCCTCGTACGAT
TGTTTGTCAAGCCTAATTTATTTTATAATCGTTGTGGTCTTTGGGCAAATAATTTATTTC
GAATTATTATATCTTGTTCCTGTTGTTTGTCTCTTAGATTCTTAAACTTTTGTATTTGTA
CCTGTCATAATGAATATCCTATAATCTTCCCCATGAAAGTAATTAACTACTTATATTTAT
TTTAGCGGAGATTATGATATTATTTAGAAT

consensusID : consensus_5338#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence

                              [ATTACTTGTATAATACATCACTGAACCTATGAATACTTGTCTTATCAGGCTATAACATCTGCTTACCTGTCCAACAGGGAAAACAATGTCTATGCTACATATAGTGCGCATTTTGCAACTTTTTATGATCTATTTCCATTCTCTTTTCACTTTTTGCTCCTCTCCGTATCTCAGTTAACTTGATATTTAATTTTTTTGATTTTCTGAGTATTATTCTTGGACTATGTGTCATGATTTTTTTGTTCATGGCTTGTTTTCAAAAGAATAAAATCCATCCCAAACGTCTTCAGTTTACATAGTCCATACTTTCACCGTTATTCGTTATCGACTGTGATGCTTTTCTTGTGTTCTGTATTTTTGTTTATCTTTTCACGTTTAAATCTCTATGCTTATGTTCAATTAACTGATGAATTGTACGGACTGATTAAAATGTCTT]

[+] EMBL CD159972             [ATTACTTGTATAATACATCACTGAACCTATGAATACTTGTCTTATCAGGCTATAACATCTGCTTACCTGTCCAACAGGGAAAACAATGTCTATGCTACATATAGTGCGCATTTTGCAACTTTTTATGATCTATTTCCATTCTCTTTTCACTTTTTGCTCCTCTCCGTATCTCAGTTAACTTGATATTTAATTTTTTTGATTTTCTGAGTATTATTCTTGGACTATGTGTCATGATTTTTTTGTTCATGGCTTGTTTTCAAAAGAATAAAATCCATCCCAAACGTCTTCAGTTTACATAGTCCATACTTTCACCGTTATTCGTTATCGACTGTGATGCTTTTCTTGTGTTCTGTATTTTTGTTTATCTTTTCACGTTTAAATCTCTATGCTTATGTTCAATTAACTGATGAATTGTACGGACTGATTAAAATGTCTT]




>consensus_5338#1
ATTACTTGTATAATACATCACTGAACCTATGAATACTTGTCTTATCAGGCTATAACATCT
GCTTACCTGTCCAACAGGGAAAACAATGTCTATGCTACATATAGTGCGCATTTTGCAACT
TTTTATGATCTATTTCCATTCTCTTTTCACTTTTTGCTCCTCTCCGTATCTCAGTTAACT
TGATATTTAATTTTTTTGATTTTCTGAGTATTATTCTTGGACTATGTGTCATGATTTTTT
TGTTCATGGCTTGTTTTCAAAAGAATAAAATCCATCCCAAACGTCTTCAGTTTACATAGT
CCATACTTTCACCGTTATTCGTTATCGACTGTGATGCTTTTCTTGTGTTCTGTATTTTTG
TTTATCTTTTCACGTTTAAATCTCTATGCTTATGTTCAATTAACTGATGAATTGTACGGA
CTGATTAAAATGTCTT

consensusID : consensus_5338#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 187
fasta sequence

                              [CTACGAGGCGAAGAATTCGGCACGAGGGCTTTTCCTTCATTGTTGCTACATACTATGCTTTCCAAATAAGCATGCATGTCTTTCACTGCTTCGTATTTATTAAATTTAGTAGTATTTATCATTATCGTTGTTTCGTCCTGACAACATTCTAACCTTCCTCGTACGATTGTTTGTCAAGCCTAACTTA]

[+] EMBL CD077579             [CTACGAGGCGAAGAATTCGGCACGAGGGCTTTTCCTTCATTGTTGCTACATACTATGCTTTCCAAATAAGCATGCATGTCTTTCACTGCTTCGTATTTATTAAATTTAGTAGTATTTATCATTATCGTTGTTTCGTCCTGACAACATTCTAACCTTCCTCGTACGATTGTTTGTCAAGCCTAACTTA]




>consensus_5338#2
CTACGAGGCGAAGAATTCGGCACGAGGGCTTTTCCTTCATTGTTGCTACATACTATGCTT
TCCAAATAAGCATGCATGTCTTTCACTGCTTCGTATTTATTAAATTTAGTAGTATTTATC
ATTATCGTTGTTTCGTCCTGACAACATTCTAACCTTCCTCGTACGATTGTTTGTCAAGCC
TAACTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5338#0      TCGNAGCCAANAATTCGGCACGAGGNAAAATCCATCCCAAACGTCTTCAGTTTACATAGT 60
consensus_5338#2      ------------------------------------------------------------
consensus_5338#1      ----------------------------------------------------------AT 2
                                                                                  

consensus_5338#0      CCATACTTTCACCGTTATTCGTTATCGACTGTGATGCTTTTCTTGTGTTCTGTATTTTTG 120
consensus_5338#2      ------------------------------------------------------------
consensus_5338#1      TACTTGTATAATACATCACTGAACCTATGAATACTTGTCTTATCAGGCTATAACATCTGC 62
                                                                                  

consensus_5338#0      TTTATCTTTTCATGTTTAAATCTCTATGCTTATGTTCAATTAACTGATGAATTGTACGGA 180
consensus_5338#2      ------------------------------------------------------------
consensus_5338#1      TTACCTGTCCAACAGGGAAAACAATGTCTATGCTACATATAGTGCGCATTTTGCAACTTT 122
                                                                                  

consensus_5338#0      CTGATTAAAATGTCTTAAATGTTATTCGTACATCGTTTATTTGTGATTCTTTCCATGTGA 240
consensus_5338#2      ------------------------------------------------------------
consensus_5338#1      TTATGATCTATTTCCATTCTCTTTTCACTTTTTGCTCCTCTCCGTATCTCAGTTAACTTG 182
                                                                                  

consensus_5338#0      AATTGCTTATTTTTTGTTTCTACATTGTCTGTTTTATTTTGCTTTTCCTTCATTGTTGC- 299
consensus_5338#2      -----------CTACGAGGCGAAGAATTCGGCACGAGG--GCTTTTCCTTCATTGTTGC- 46
consensus_5338#1      ATATTTAATTTTTTTGATTTTCTGAGTATTATTCTTGGACTATGTGTCATGATTTTTTTG 242
                                  *  *                          * *  * * *** **   

consensus_5338#0      TACATACTATGCTTTCCAAATAAGCATGCATGTCTTTCACTGCTTCGTATTTATTAAATT 359
consensus_5338#2      TACATACTATGCTTTCCAAATAAGCATGCATGTCTTTCACTGCTTCGTATTTATTAAATT 106
consensus_5338#1      TTCATGGCTTGTTTTCAAAAGAATAAAATCCATCCCAAACGTCTTCA-GTTTACATAGTC 301
                      * ***    ** **** *** **  *      **    **  ****   ****   * * 

consensus_5338#0      TAGTAGTATTTATCATTATCGTTGTTTCGTCCTGACAACATTCTAACCTTCCTCGTACGA 419
consensus_5338#2      TAGTAGTATTTATCATTATCGTTGTTTCGTCCTGACAACATTCTAACCTTCCTCGTACGA 166
consensus_5338#1      CA-TACT-TTCACCGTTATTCGTTATCGACTGTGATGCTTTTCTTGTGTTC--TGTATTT 357
                       * ** * ** * * ****   *  *      ***     ****    ***   ***   

consensus_5338#0      TTGTTTGTCAAGCCTAATTTATTTTATAATCGTTGTGGTCTTTGGGCAAATAATTTATTT 479
consensus_5338#2      TTGTTTGTCAAGCCTAACTTA--------------------------------------- 187
consensus_5338#1      TTGTTTATCTTTTCACGTTTAAATCTCTATGCTTATGTTCAATTAACTGATGAATTGTAC 417
                      ****** **    *    ***                                       

consensus_5338#0      CGAATTATTATATCTTGTTCCTGTTGTTTGTCTCTTAGATTCTTAAACTTTTGTATTTGT 539
consensus_5338#2      ------------------------------------------------------------
consensus_5338#1      GGACTGATTAAAATGTCTT----------------------------------------- 436
                                                                                  

consensus_5338#0      ACCTGTCATAATGAATATCCTATAATCTTCCCCATGAAAGTAATTAACTACTTATATTTA 599
consensus_5338#2      ------------------------------------------------------------
consensus_5338#1      ------------------------------------------------------------
                                                                                  

consensus_5338#0      TTTTAGCGGAGATTATGATATTATTTAGAAT 630
consensus_5338#2      -------------------------------
consensus_5338#1      -------------------------------