cluster # 5350

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Schistosoma mansoni
cluster # 5350 cluster # 5350 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5350#0 length = 384 sequences # 1

consensus_5350#1 length = 264 sequences # 2

consensusID : consensus_5350#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 384
fasta sequence

                              [ACCGCGAAAATGCTTCATATATCAAATCCAATCGGCTCTTCTCTTATCTCTTGGGGATCAGAATACAAAGATGATCAAGCAATGTCAAATAAATCTTGGACTCAGAATACTAGCTGTAAATTCCAGTCAAATAAAACTTTACGTGATAAACTGGTTTCATCTTTCGTTCAAGAGCAAAGTGGTCCAAAAGCATCTAACAGTTCGTCATGTTTGTCCAAAGCTGAGAGACGTATGCTTTTTGAAGCTCAAGTTAAAGCTAATGAAAATCAATGTTCATCTGAAAATTCTGTCCCTACATCGGATGAATTTTTGCAGAAAAAAACCGTCTAATGCTGAAAAAGATACAGATCATCTTCGTCAGTTACTACTCCCGTGGGCGGNNNN]

[+] EMBL CD113218             [ACCGCGAAAATGCTTCATATATCAAATCCAATCGGCTCTTCTCTTATCTCTTGGGGATCAGAATACAAAGATGATCAAGCAATGTCAAATAAATCTTGGACTCAGAATACTAGCTGTAAATTCCAGTCAAATAAAACTTTACGTGATAAACTGGTTTCATCTTTCGTTCAAGAGCAAAGTGGTCCAAAAGCATCTAACAGTTCGTCATGTTTGTCCAAAGCTGAGAGACGTATGCTTTTTGAAGCTCAAGTTAAAGCTAATGAAAATCAATGTTCATCTGAAAATTCTGTCCCTACATCGGATGAATTTTTGCAGAAAAAAACCGTCTAATGCTGAAAAAGATACAGATCATCTTCGTCAGTTACTACTCCCGTGGGCGGNNNN]




>consensus_5350#0
ACCGCGAAAATGCTTCATATATCAAATCCAATCGGCTCTTCTCTTATCTCTTGGGGATCA
GAATACAAAGATGATCAAGCAATGTCAAATAAATCTTGGACTCAGAATACTAGCTGTAAA
TTCCAGTCAAATAAAACTTTACGTGATAAACTGGTTTCATCTTTCGTTCAAGAGCAAAGT
GGTCCAAAAGCATCTAACAGTTCGTCATGTTTGTCCAAAGCTGAGAGACGTATGCTTTTT
GAAGCTCAAGTTAAAGCTAATGAAAATCAATGTTCATCTGAAAATTCTGTCCCTACATCG
GATGAATTTTTGCAGAAAAAAACCGTCTAATGCTGAAAAAGATACAGATCATCTTCGTCA
GTTACTACTCCCGTGGGCGGNNNN

consensusID : consensus_5350#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 264
fasta sequence

                              [ACAGTTCGTCATGTTTGTCCAAAGCTGAGAGACGTATGCTTTTTGAAGCTCAAGTTAAAGCTAATGAAAATCAATGTTCATCTGAAAATTCTGTCCCTACATCGGATGAATTTTTGCAGAAAAAACCGTCTAATGCTGAAAAAGATACAGATCATCTTCGTCAGTTACTACTCTGTGCACTTTTAAGTGAGTGTGGTCGAAACAATACTGCGCTTTCAAATCTTTTATCCAACATAGCAGTAGAAACTGAAAGCATGCCTGNNT]

[+] EMBL CD139654             [ACAGTTCGTCATGTTTGTCCAAAGCTGAGAGACGTATGCTTTTTGAAGCTCAAGTTAAAGCTAATGAAAATCAATGTTCATCTGAAAATTCTGTCCCTACATCGGATGAATTTTTGCAGAAAAAACCGTCTAATGCTGAAAAAGATACAGATCATCTTCGTCAGTTACTACTCTGTGCACTTTTAAGTGAGTGTGGTCGAAACAATACTGCGCTTTCAAATCTTTTATCCAACATAGCAGTAGAAACTGAAAGCATGCCTGNNT]
[+] EMBL CD139850             [ACAGTTCGTCATGTTTGTCCAAAGCTGAGAGACGTATGCTTTTTGAAGCTCAAGTTAAAGCTAATGAAAATCAATGTTCATCTGAAAATTCTGTCCCTACATCGGATGAATTTTTGCAGAAAAAACCGTCTAATGCTGAAAAAGATACAGATCATCTTCGTCAGTTACTACTCTGTGCACTTTTAAGTGAGTGTGGTCGAAACAATACTGCGCTTTCAA                                             ]




>consensus_5350#1
ACAGTTCGTCATGTTTGTCCAAAGCTGAGAGACGTATGCTTTTTGAAGCTCAAGTTAAAG
CTAATGAAAATCAATGTTCATCTGAAAATTCTGTCCCTACATCGGATGAATTTTTGCAGA
AAAAACCGTCTAATGCTGAAAAAGATACAGATCATCTTCGTCAGTTACTACTCTGTGCAC
TTTTAAGTGAGTGTGGTCGAAACAATACTGCGCTTTCAAATCTTTTATCCAACATAGCAG
TAGAAACTGAAAGCATGCCTGNNT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5350#0      ACCGCGAAAATGCTTCATATATCAAATCCAATCGGCTCTTCTCTTATCTCTTGGGGATCA 60
consensus_5350#1      ------------------------------------------------------------
                                                                                  

consensus_5350#0      GAATACAAAGATGATCAAGCAATGTCAAATAAATCTTGGACTCAGAATACTAGCTGTAAA 120
consensus_5350#1      ------------------------------------------------------------
                                                                                  

consensus_5350#0      TTCCAGTCAAATAAAACTTTACGTGATAAACTGGTTTCATCTTTCGTTCAAGAGCAAAGT 180
consensus_5350#1      ------------------------------------------------------------
                                                                                  

consensus_5350#0      GGTCCAAAAGCATCTAACAGTTCGTCATGTTTGTCCAAAGCTGAGAGACGTATGCTTTTT 240
consensus_5350#1      ----------------ACAGTTCGTCATGTTTGTCCAAAGCTGAGAGACGTATGCTTTTT 44
                                      ********************************************

consensus_5350#0      GAAGCTCAAGTTAAAGCTAATGAAAATCAATGTTCATCTGAAAATTCTGTCCCTACATCG 300
consensus_5350#1      GAAGCTCAAGTTAAAGCTAATGAAAATCAATGTTCATCTGAAAATTCTGTCCCTACATCG 104
                      ************************************************************

consensus_5350#0      GATGAATTTTTGCAGAAAAAAACCGTCTAATGCTGAAAAAGATACAGATCATCTTCGTCA 360
consensus_5350#1      GATGAATTTTTGCAGAAAAAA-CCGTCTAATGCTGAAAAAGATACAGATCATCTTCGTCA 163
                      ********************* **************************************

consensus_5350#0      GTTACTACTCCCGTGGGCGGNNNN------------------------------------ 384
consensus_5350#1      GTTACTACTCT-GTGCACTTTTAAGTGAGTGTGGTCGAAACAATACTGCGCTTTCAAATC 222
                      **********  ***  *                                          

consensus_5350#0      ------------------------------------------
consensus_5350#1      TTTTATCCAACATAGCAGTAGAAACTGAAAGCATGCCTGNNT 264