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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5353#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 684 fasta sequence
[AATAGTGCTCTGAAAAATCAATTTCACTAGTTTATCATCTAGTATCAATGTCGATCATATTCGAATAATTTTGCGACCCCCAGAAGAAAAAGCGGATTGGATAGCTAGTTTACTAAGTATTCAAAGTTATCGACTGTTTATACGGTATATACGAACGTTACCCAGACTGGAAGTCTCACTTCGTTTGCCGTCGTCACACATTTACAAATTTAGTCAACCTGATAGCATGGACAATATTATATTTGAAACAAATATGCCAACATCTATGTTATATCCTCATAAAAATAGTTCCATTACGAATCAACAGGAACAATATTCACATGAACAACAGTCTATAATTCAATCAGCTGATGTAACAAATCATTTTGATTCTGGTAAAATACGTTGTTTCAACGAATCAACTAGTTATTTACGTACAACAGGTGATACCAGTCCAGATGGTGAAAGGTAAGTGGAAGAAGCAGAAGAAAAAGATGATGATGGCGGTGTTGATGAAGATGATGATGGAGTATTGATAGGATCACATTCTTTAACGTCTTCTAGTATTGTTGTTAATTCTTCACCTCTTTCATTAGGAATTGGTCTATCATCGCAATCTTCACCGATAACAATTACATCATTATCATCAAATATTGAAAATTCTACTACCACTCATAATAGTAATTTTACCGGCACTGAACGTAG]
[-] EMBL CD129683 [AATAGTGCTCTGAAAAATCAATTTCACTAGTTTATCATCTAGTATCAATGTCGATCATATTCGAATAATTTTGCGACCCCCAGAAGAAAAAGCGGATTGGATAGCTAGTTTACTAAGTATTCAAAGTTATCGACTGTTTATACGGTATATACGAACGTTACCCAGACTGGAAGTCTCACTTCGTTTGCCGTCGTCACACATTTACAAATTTAGTCAACCTGATAGCATGGACAATATTATATTTGAAACAAATATGCCAACATCTATGTTATATCCTCATAAAAATAGTTCCATTACGAATCAACAGGAACAATATTCACATGAACAACAGTCTATAATTCAATCAGCTGATGTAACAAATCATTTTGATTCTGGTAAAATACGTTGTTTCAACGAATCAACTAGTTATTTACGTACAACAGGTGATACCAGTCCAGATGGTGAAAGGTAAGTGGAAGAAGCAGAAGAAAAAGATGATGATGGCG ]
[+] EMBL CD170957 [ ACAAATTTAGTCAACCTGATAGCATGGACAATATTATATTTGAAACAAATATGCCAACATCTATGTTATATCCTCATAAAAATAGTTCCATTACGAATCAACAGGAACAATATTCACATGAACAACAGTCTATAATACAATCAGCTGATGTAACAAATCATTTTGATTCTGGTAAAATACGTTGTTTCAACGAATCAACTAGTTATTTACGTACAACAGGTGATACCAGTCCAGATGGTGAAAGGGAAGTGGAAGAAGCAGAAGAAGAAGATGATGATGGCGGTGTTGATGAAGATGATGATGGAGTATTGATAGGATCACATTCTTTAACGTCTTCTAGTATTGTTGTTAATTCTTCACCTCTTTCATTAGGAATTGGTCTATCATCGCAATCTTCACCGATAACAATTACATCATTATCATCAAATATTGAAAATTCTACTACCACTCATAATAGTAATTTTACCGGCACTGAACGTAG]
consensusID : consensus_5353#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence
[CGGTACCCCCAAGGTTGGNNAAATCAGGAGAAAAAGATGATGATGGCGGTGTTGATGAAGATGATGATGGAGTATTGATAGGATCACATTCTTTAACGTCTTCTAGTATTGTTGTTAATTCTTCACCTCTTTCATTAGGAATTGGTCTATCATCGCAATCTTCACCGATAACAATTACATCATTATCATCAAATATTGAAAATTCTACTACCACTCATAATAGTAATTTTACCGGCACTGAACGTAGTGATGATCGCAATGAAGAGATAATATCTGAAAGCCATAAAAAGCAAGACAATACTAAGGTTATGATGTCAATGTTGAGTGACAGTGGTTCATCGAGTACACTAACACTGACCAGTCATGGATCATCTAATGATTGTTATAATAATAATCACAACCAAACTCTTACAAATGGTCGTACCAATGCAATAAAGTCTTTGCGTGATTATGCTTTTCAACGACAATCATCGCAATCCCCTAATCGGTCTACTGAAATTGTCAATATGCACACTAATCAACGCTT]
[+] EMBL CD129545 [CGGTACCCCCAAGGTTGGNNAAATCAGGAGAAAAAGATGATGATGGCGGTGTTGATGAAGATGATGATGGAGTATTGATAGGATCACATTCTTTAACGTCTTCTAGTATTGTTGTTAATTCTTCACCTCTTTCATTAGGAATTGGTCTATCATCGCAATCTTCACCGATAACAATTACATCATTATCATCAAATATTGAAAATTCTACTACCACTCATAATAGTAATTTTACCGGCACTGAACGTAGTGATGATCGCAATGAAGAGATAATATCTGAAAGCCATAAAAAGCAAGACAATACTAAGGTTATGATGTCAATGTTGAGTGACAGTGGTTCATCGAGTACACTAACACTGACCAGTCATGGATCATCTAATGATTGTTATAATAATAATCACAACCAAACTCTTACAAATGGTCGTACCAATGCAATAAAGTCTTTGCGTGATTATGCTTTTCAACGACAATCATCGCAATCCCCTAATCGGTCTACTGAAATTGTCAATATGCACACTAATCAACGCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5353#0 AATAGTGCTCTGAAAAATCAATTTCACTAGTTTATCATCTAGTATCAATGTCGATCATAT 60
consensus_5353#1 ------------------------------------------------------CGGTAC 6
**
consensus_5353#0 TCGAATAATTTTGCGACCCCCAGAAGAAAAAGCGGATTGGATAGCTAGTTTACTAAGTAT 120
consensus_5353#1 CCC--CAAGGTTGGNNAAATCAGGAGAAAAAGATGAT--GATGGCGGTGTTGATGAAGAT 62
* ** *** *** ******** *** *** ** ** * * **
consensus_5353#0 TCAAAGTTATCGACTGTTTATACGGT---ATATACGAACGTTACCCAG-ACTGGAAGTCT 176
consensus_5353#1 ----GATGATGGAGTATTGATAGGATCACATTCTTTAACGTCTTCTAGTATTGTTGTTAA 118
* ** ** * ** *** * * ** ***** * ** * ** *
consensus_5353#0 CACTTCGTTTGCCGTCGTCACACATTTACAAATTTAGTCAACCTGATAGCATGGACAATA 236
consensus_5353#1 TTCTTCACCT-CTTTCATTAGGAATTGGTCTATCATCGCAATCTT-CACCGATAACAATT 176
**** * * ** * * *** ** *** ** * * *****
consensus_5353#0 TTATATTTGAAACAAATATGCCAACATCTATGTTATATCCTCATAAAAATAGTTCCATTA 296
consensus_5353#1 ACATCATTATCATCAA-ATATTGAAAATTCTACTAC-CACTCATAATAGTAATTTTACCG 234
** ** * ** ** * * * * ** ******* * ** ** *
consensus_5353#0 CGAATCAACAGGAACAATATTCACATGAACAACAGTCTATAATTCAATCAGCTGATGTAA 356
consensus_5353#1 GCACTGAAC-GTAGTGATGATCGCAATGAAGAGATAATATCTGAAAGCCATAAAAAGCAA 293
* * *** * * ** ** ** * * * *** * ** * * **
consensus_5353#0 CAAATCATTTTGATTCTGGTAA-AATACGTTGTTTCAACGAATCAACTAGTTATTTACGT 415
consensus_5353#1 GACAATACTAAGGTTATGATGTCAATGTTGAGTGACAGTGGTTCATCGAGTACACTAACA 353
* * * * * ** ** * *** ** ** * *** * *** **
consensus_5353#0 ACAACAGGTGATACCAGTCCAGATGGTGAAAGGTAAGTGGAAGAAGCAGAAGAAAAAGAT 475
consensus_5353#1 CTGACCAGTCATG---GATCATCTAATGATTGTTATA-ATAATAATCACAACCAAACTCT 409
** ** ** * ** * *** * ** ** ** ** ** *** *
consensus_5353#0 GATGA-TGGCGGTGTTGATGAAGATGATGATGGAGTATTGATAGGATCACATTCTTTAAC 534
consensus_5353#1 TACAAATGGTCGTACCAATG-------CAATAAAGTCTTTGCGTGATTATGCTTTTCAAC 462
* * *** ** *** ** *** ** *** * * ** ***
consensus_5353#0 GTCTTCTAGTATTGTTGTTAATTCTTCACCTCTTTCATTAGGAATTGGTCTATCATCGCA 594
consensus_5353#1 GACA------ATCATCGC-AATCCCCTAATCGGTCTACT--GAAATTGTCAATATGCACA 513
* * ** * * *** * * * * * *** * *** ** * **
consensus_5353#0 ATCTTCACCGATAACAATTACATCATTATCATCAAATATTGAAAATTCTACTACCACTCA 654
consensus_5353#1 CTAATCAACGCTT----------------------------------------------- 526
* *** ** *
consensus_5353#0 TAATAGTAATTTTACCGGCACTGAACGTAG 684
consensus_5353#1 ------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||