These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5353#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 684 fasta sequence [AATAGTGCTCTGAAAAATCAATTTCACTAGTTTATCATCTAGTATCAATGTCGATCATATTCGAATAATTTTGCGACCCCCAGAAGAAAAAGCGGATTGGATAGCTAGTTTACTAAGTATTCAAAGTTATCGACTGTTTATACGGTATATACGAACGTTACCCAGACTGGAAGTCTCACTTCGTTTGCCGTCGTCACACATTTACAAATTTAGTCAACCTGATAGCATGGACAATATTATATTTGAAACAAATATGCCAACATCTATGTTATATCCTCATAAAAATAGTTCCATTACGAATCAACAGGAACAATATTCACATGAACAACAGTCTATAATTCAATCAGCTGATGTAACAAATCATTTTGATTCTGGTAAAATACGTTGTTTCAACGAATCAACTAGTTATTTACGTACAACAGGTGATACCAGTCCAGATGGTGAAAGGTAAGTGGAAGAAGCAGAAGAAAAAGATGATGATGGCGGTGTTGATGAAGATGATGATGGAGTATTGATAGGATCACATTCTTTAACGTCTTCTAGTATTGTTGTTAATTCTTCACCTCTTTCATTAGGAATTGGTCTATCATCGCAATCTTCACCGATAACAATTACATCATTATCATCAAATATTGAAAATTCTACTACCACTCATAATAGTAATTTTACCGGCACTGAACGTAG] [-] EMBL CD129683 [AATAGTGCTCTGAAAAATCAATTTCACTAGTTTATCATCTAGTATCAATGTCGATCATATTCGAATAATTTTGCGACCCCCAGAAGAAAAAGCGGATTGGATAGCTAGTTTACTAAGTATTCAAAGTTATCGACTGTTTATACGGTATATACGAACGTTACCCAGACTGGAAGTCTCACTTCGTTTGCCGTCGTCACACATTTACAAATTTAGTCAACCTGATAGCATGGACAATATTATATTTGAAACAAATATGCCAACATCTATGTTATATCCTCATAAAAATAGTTCCATTACGAATCAACAGGAACAATATTCACATGAACAACAGTCTATAATTCAATCAGCTGATGTAACAAATCATTTTGATTCTGGTAAAATACGTTGTTTCAACGAATCAACTAGTTATTTACGTACAACAGGTGATACCAGTCCAGATGGTGAAAGGTAAGTGGAAGAAGCAGAAGAAAAAGATGATGATGGCG ] [+] EMBL CD170957 [ ACAAATTTAGTCAACCTGATAGCATGGACAATATTATATTTGAAACAAATATGCCAACATCTATGTTATATCCTCATAAAAATAGTTCCATTACGAATCAACAGGAACAATATTCACATGAACAACAGTCTATAATACAATCAGCTGATGTAACAAATCATTTTGATTCTGGTAAAATACGTTGTTTCAACGAATCAACTAGTTATTTACGTACAACAGGTGATACCAGTCCAGATGGTGAAAGGGAAGTGGAAGAAGCAGAAGAAGAAGATGATGATGGCGGTGTTGATGAAGATGATGATGGAGTATTGATAGGATCACATTCTTTAACGTCTTCTAGTATTGTTGTTAATTCTTCACCTCTTTCATTAGGAATTGGTCTATCATCGCAATCTTCACCGATAACAATTACATCATTATCATCAAATATTGAAAATTCTACTACCACTCATAATAGTAATTTTACCGGCACTGAACGTAG] consensusID : consensus_5353#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [CGGTACCCCCAAGGTTGGNNAAATCAGGAGAAAAAGATGATGATGGCGGTGTTGATGAAGATGATGATGGAGTATTGATAGGATCACATTCTTTAACGTCTTCTAGTATTGTTGTTAATTCTTCACCTCTTTCATTAGGAATTGGTCTATCATCGCAATCTTCACCGATAACAATTACATCATTATCATCAAATATTGAAAATTCTACTACCACTCATAATAGTAATTTTACCGGCACTGAACGTAGTGATGATCGCAATGAAGAGATAATATCTGAAAGCCATAAAAAGCAAGACAATACTAAGGTTATGATGTCAATGTTGAGTGACAGTGGTTCATCGAGTACACTAACACTGACCAGTCATGGATCATCTAATGATTGTTATAATAATAATCACAACCAAACTCTTACAAATGGTCGTACCAATGCAATAAAGTCTTTGCGTGATTATGCTTTTCAACGACAATCATCGCAATCCCCTAATCGGTCTACTGAAATTGTCAATATGCACACTAATCAACGCTT] [+] EMBL CD129545 [CGGTACCCCCAAGGTTGGNNAAATCAGGAGAAAAAGATGATGATGGCGGTGTTGATGAAGATGATGATGGAGTATTGATAGGATCACATTCTTTAACGTCTTCTAGTATTGTTGTTAATTCTTCACCTCTTTCATTAGGAATTGGTCTATCATCGCAATCTTCACCGATAACAATTACATCATTATCATCAAATATTGAAAATTCTACTACCACTCATAATAGTAATTTTACCGGCACTGAACGTAGTGATGATCGCAATGAAGAGATAATATCTGAAAGCCATAAAAAGCAAGACAATACTAAGGTTATGATGTCAATGTTGAGTGACAGTGGTTCATCGAGTACACTAACACTGACCAGTCATGGATCATCTAATGATTGTTATAATAATAATCACAACCAAACTCTTACAAATGGTCGTACCAATGCAATAAAGTCTTTGCGTGATTATGCTTTTCAACGACAATCATCGCAATCCCCTAATCGGTCTACTGAAATTGTCAATATGCACACTAATCAACGCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5353#0 AATAGTGCTCTGAAAAATCAATTTCACTAGTTTATCATCTAGTATCAATGTCGATCATAT 60 consensus_5353#1 ------------------------------------------------------CGGTAC 6 ** consensus_5353#0 TCGAATAATTTTGCGACCCCCAGAAGAAAAAGCGGATTGGATAGCTAGTTTACTAAGTAT 120 consensus_5353#1 CCC--CAAGGTTGGNNAAATCAGGAGAAAAAGATGAT--GATGGCGGTGTTGATGAAGAT 62 * ** *** *** ******** *** *** ** ** * * ** consensus_5353#0 TCAAAGTTATCGACTGTTTATACGGT---ATATACGAACGTTACCCAG-ACTGGAAGTCT 176 consensus_5353#1 ----GATGATGGAGTATTGATAGGATCACATTCTTTAACGTCTTCTAGTATTGTTGTTAA 118 * ** ** * ** *** * * ** ***** * ** * ** * consensus_5353#0 CACTTCGTTTGCCGTCGTCACACATTTACAAATTTAGTCAACCTGATAGCATGGACAATA 236 consensus_5353#1 TTCTTCACCT-CTTTCATTAGGAATTGGTCTATCATCGCAATCTT-CACCGATAACAATT 176 **** * * ** * * *** ** *** ** * * ***** consensus_5353#0 TTATATTTGAAACAAATATGCCAACATCTATGTTATATCCTCATAAAAATAGTTCCATTA 296 consensus_5353#1 ACATCATTATCATCAA-ATATTGAAAATTCTACTAC-CACTCATAATAGTAATTTTACCG 234 ** ** * ** ** * * * * ** ******* * ** ** * consensus_5353#0 CGAATCAACAGGAACAATATTCACATGAACAACAGTCTATAATTCAATCAGCTGATGTAA 356 consensus_5353#1 GCACTGAAC-GTAGTGATGATCGCAATGAAGAGATAATATCTGAAAGCCATAAAAAGCAA 293 * * *** * * ** ** ** * * * *** * ** * * ** consensus_5353#0 CAAATCATTTTGATTCTGGTAA-AATACGTTGTTTCAACGAATCAACTAGTTATTTACGT 415 consensus_5353#1 GACAATACTAAGGTTATGATGTCAATGTTGAGTGACAGTGGTTCATCGAGTACACTAACA 353 * * * * * ** ** * *** ** ** * *** * *** ** consensus_5353#0 ACAACAGGTGATACCAGTCCAGATGGTGAAAGGTAAGTGGAAGAAGCAGAAGAAAAAGAT 475 consensus_5353#1 CTGACCAGTCATG---GATCATCTAATGATTGTTATA-ATAATAATCACAACCAAACTCT 409 ** ** ** * ** * *** * ** ** ** ** ** *** * consensus_5353#0 GATGA-TGGCGGTGTTGATGAAGATGATGATGGAGTATTGATAGGATCACATTCTTTAAC 534 consensus_5353#1 TACAAATGGTCGTACCAATG-------CAATAAAGTCTTTGCGTGATTATGCTTTTCAAC 462 * * *** ** *** ** *** ** *** * * ** *** consensus_5353#0 GTCTTCTAGTATTGTTGTTAATTCTTCACCTCTTTCATTAGGAATTGGTCTATCATCGCA 594 consensus_5353#1 GACA------ATCATCGC-AATCCCCTAATCGGTCTACT--GAAATTGTCAATATGCACA 513 * * ** * * *** * * * * * *** * *** ** * ** consensus_5353#0 ATCTTCACCGATAACAATTACATCATTATCATCAAATATTGAAAATTCTACTACCACTCA 654 consensus_5353#1 CTAATCAACGCTT----------------------------------------------- 526 * *** ** * consensus_5353#0 TAATAGTAATTTTACCGGCACTGAACGTAG 684 consensus_5353#1 ------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||