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Schistosoma mansoni
cluster # 5353 cluster # 5353       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5353#0 length = 684 sequences # 2  
consensus_5353#1 length = 526 sequences # 1  

consensusID : consensus_5353#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 684
fasta sequence
                              [AATAGTGCTCTGAAAAATCAATTTCACTAGTTTATCATCTAGTATCAATGTCGATCATATTCGAATAATTTTGCGACCCCCAGAAGAAAAAGCGGATTGGATAGCTAGTTTACTAAGTATTCAAAGTTATCGACTGTTTATACGGTATATACGAACGTTACCCAGACTGGAAGTCTCACTTCGTTTGCCGTCGTCACACATTTACAAATTTAGTCAACCTGATAGCATGGACAATATTATATTTGAAACAAATATGCCAACATCTATGTTATATCCTCATAAAAATAGTTCCATTACGAATCAACAGGAACAATATTCACATGAACAACAGTCTATAATTCAATCAGCTGATGTAACAAATCATTTTGATTCTGGTAAAATACGTTGTTTCAACGAATCAACTAGTTATTTACGTACAACAGGTGATACCAGTCCAGATGGTGAAAGGTAAGTGGAAGAAGCAGAAGAAAAAGATGATGATGGCGGTGTTGATGAAGATGATGATGGAGTATTGATAGGATCACATTCTTTAACGTCTTCTAGTATTGTTGTTAATTCTTCACCTCTTTCATTAGGAATTGGTCTATCATCGCAATCTTCACCGATAACAATTACATCATTATCATCAAATATTGAAAATTCTACTACCACTCATAATAGTAATTTTACCGGCACTGAACGTAG]

[-] EMBL CD129683             [AATAGTGCTCTGAAAAATCAATTTCACTAGTTTATCATCTAGTATCAATGTCGATCATATTCGAATAATTTTGCGACCCCCAGAAGAAAAAGCGGATTGGATAGCTAGTTTACTAAGTATTCAAAGTTATCGACTGTTTATACGGTATATACGAACGTTACCCAGACTGGAAGTCTCACTTCGTTTGCCGTCGTCACACATTTACAAATTTAGTCAACCTGATAGCATGGACAATATTATATTTGAAACAAATATGCCAACATCTATGTTATATCCTCATAAAAATAGTTCCATTACGAATCAACAGGAACAATATTCACATGAACAACAGTCTATAATTCAATCAGCTGATGTAACAAATCATTTTGATTCTGGTAAAATACGTTGTTTCAACGAATCAACTAGTTATTTACGTACAACAGGTGATACCAGTCCAGATGGTGAAAGGTAAGTGGAAGAAGCAGAAGAAAAAGATGATGATGGCG                                                                                                                                                                                                       ]
[+] EMBL CD170957             [                                                                                                                                                                                                           ACAAATTTAGTCAACCTGATAGCATGGACAATATTATATTTGAAACAAATATGCCAACATCTATGTTATATCCTCATAAAAATAGTTCCATTACGAATCAACAGGAACAATATTCACATGAACAACAGTCTATAATACAATCAGCTGATGTAACAAATCATTTTGATTCTGGTAAAATACGTTGTTTCAACGAATCAACTAGTTATTTACGTACAACAGGTGATACCAGTCCAGATGGTGAAAGGGAAGTGGAAGAAGCAGAAGAAGAAGATGATGATGGCGGTGTTGATGAAGATGATGATGGAGTATTGATAGGATCACATTCTTTAACGTCTTCTAGTATTGTTGTTAATTCTTCACCTCTTTCATTAGGAATTGGTCTATCATCGCAATCTTCACCGATAACAATTACATCATTATCATCAAATATTGAAAATTCTACTACCACTCATAATAGTAATTTTACCGGCACTGAACGTAG]


>consensus_5353#0 AATAGTGCTCTGAAAAATCAATTTCACTAGTTTATCATCTAGTATCAATGTCGATCATAT TCGAATAATTTTGCGACCCCCAGAAGAAAAAGCGGATTGGATAGCTAGTTTACTAAGTAT TCAAAGTTATCGACTGTTTATACGGTATATACGAACGTTACCCAGACTGGAAGTCTCACT TCGTTTGCCGTCGTCACACATTTACAAATTTAGTCAACCTGATAGCATGGACAATATTAT ATTTGAAACAAATATGCCAACATCTATGTTATATCCTCATAAAAATAGTTCCATTACGAA TCAACAGGAACAATATTCACATGAACAACAGTCTATAATTCAATCAGCTGATGTAACAAA TCATTTTGATTCTGGTAAAATACGTTGTTTCAACGAATCAACTAGTTATTTACGTACAAC AGGTGATACCAGTCCAGATGGTGAAAGGTAAGTGGAAGAAGCAGAAGAAAAAGATGATGA TGGCGGTGTTGATGAAGATGATGATGGAGTATTGATAGGATCACATTCTTTAACGTCTTC TAGTATTGTTGTTAATTCTTCACCTCTTTCATTAGGAATTGGTCTATCATCGCAATCTTC ACCGATAACAATTACATCATTATCATCAAATATTGAAAATTCTACTACCACTCATAATAG TAATTTTACCGGCACTGAACGTAG



consensusID : consensus_5353#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence
                              [CGGTACCCCCAAGGTTGGNNAAATCAGGAGAAAAAGATGATGATGGCGGTGTTGATGAAGATGATGATGGAGTATTGATAGGATCACATTCTTTAACGTCTTCTAGTATTGTTGTTAATTCTTCACCTCTTTCATTAGGAATTGGTCTATCATCGCAATCTTCACCGATAACAATTACATCATTATCATCAAATATTGAAAATTCTACTACCACTCATAATAGTAATTTTACCGGCACTGAACGTAGTGATGATCGCAATGAAGAGATAATATCTGAAAGCCATAAAAAGCAAGACAATACTAAGGTTATGATGTCAATGTTGAGTGACAGTGGTTCATCGAGTACACTAACACTGACCAGTCATGGATCATCTAATGATTGTTATAATAATAATCACAACCAAACTCTTACAAATGGTCGTACCAATGCAATAAAGTCTTTGCGTGATTATGCTTTTCAACGACAATCATCGCAATCCCCTAATCGGTCTACTGAAATTGTCAATATGCACACTAATCAACGCTT]

[+] EMBL CD129545             [CGGTACCCCCAAGGTTGGNNAAATCAGGAGAAAAAGATGATGATGGCGGTGTTGATGAAGATGATGATGGAGTATTGATAGGATCACATTCTTTAACGTCTTCTAGTATTGTTGTTAATTCTTCACCTCTTTCATTAGGAATTGGTCTATCATCGCAATCTTCACCGATAACAATTACATCATTATCATCAAATATTGAAAATTCTACTACCACTCATAATAGTAATTTTACCGGCACTGAACGTAGTGATGATCGCAATGAAGAGATAATATCTGAAAGCCATAAAAAGCAAGACAATACTAAGGTTATGATGTCAATGTTGAGTGACAGTGGTTCATCGAGTACACTAACACTGACCAGTCATGGATCATCTAATGATTGTTATAATAATAATCACAACCAAACTCTTACAAATGGTCGTACCAATGCAATAAAGTCTTTGCGTGATTATGCTTTTCAACGACAATCATCGCAATCCCCTAATCGGTCTACTGAAATTGTCAATATGCACACTAATCAACGCTT]


>consensus_5353#1 CGGTACCCCCAAGGTTGGNNAAATCAGGAGAAAAAGATGATGATGGCGGTGTTGATGAAG ATGATGATGGAGTATTGATAGGATCACATTCTTTAACGTCTTCTAGTATTGTTGTTAATT CTTCACCTCTTTCATTAGGAATTGGTCTATCATCGCAATCTTCACCGATAACAATTACAT CATTATCATCAAATATTGAAAATTCTACTACCACTCATAATAGTAATTTTACCGGCACTG AACGTAGTGATGATCGCAATGAAGAGATAATATCTGAAAGCCATAAAAAGCAAGACAATA CTAAGGTTATGATGTCAATGTTGAGTGACAGTGGTTCATCGAGTACACTAACACTGACCA GTCATGGATCATCTAATGATTGTTATAATAATAATCACAACCAAACTCTTACAAATGGTC GTACCAATGCAATAAAGTCTTTGCGTGATTATGCTTTTCAACGACAATCATCGCAATCCC CTAATCGGTCTACTGAAATTGTCAATATGCACACTAATCAACGCTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5353#0      AATAGTGCTCTGAAAAATCAATTTCACTAGTTTATCATCTAGTATCAATGTCGATCATAT 60
consensus_5353#1      ------------------------------------------------------CGGTAC 6
                                                                               ** 

consensus_5353#0      TCGAATAATTTTGCGACCCCCAGAAGAAAAAGCGGATTGGATAGCTAGTTTACTAAGTAT 120
consensus_5353#1      CCC--CAAGGTTGGNNAAATCAGGAGAAAAAGATGAT--GATGGCGGTGTTGATGAAGAT 62
                       *    **  ***       *** ********  ***  *** **    **  * *  **

consensus_5353#0      TCAAAGTTATCGACTGTTTATACGGT---ATATACGAACGTTACCCAG-ACTGGAAGTCT 176
consensus_5353#1      ----GATGATGGAGTATTGATAGGATCACATTCTTTAACGTCTTCTAGTATTGTTGTTAA 118
                            * ** ** * ** *** * *   **     *****   * ** * **    *  

consensus_5353#0      CACTTCGTTTGCCGTCGTCACACATTTACAAATTTAGTCAACCTGATAGCATGGACAATA 236
consensus_5353#1      TTCTTCACCT-CTTTCATTAGGAATTGGTCTATCATCGCAATCTT-CACCGATAACAATT 176
                        ****   * *  ** * *   ***     **     *** **   * *    ***** 

consensus_5353#0      TTATATTTGAAACAAATATGCCAACATCTATGTTATATCCTCATAAAAATAGTTCCATTA 296
consensus_5353#1      ACATCATTATCATCAA-ATATTGAAAATTCTACTAC-CACTCATAATAGTAATTTTACCG 234
                        **  **   *  ** **    * *  * *  **    ******* * ** **  *   

consensus_5353#0      CGAATCAACAGGAACAATATTCACATGAACAACAGTCTATAATTCAATCAGCTGATGTAA 356
consensus_5353#1      GCACTGAAC-GTAGTGATGATCGCAATGAAGAGATAATATCTGAAAGCCATAAAAAGCAA 293
                        * * *** * *   **  ** **   *  * *   ***     *  **    * * **

consensus_5353#0      CAAATCATTTTGATTCTGGTAA-AATACGTTGTTTCAACGAATCAACTAGTTATTTACGT 415
consensus_5353#1      GACAATACTAAGGTTATGATGTCAATGTTGAGTGACAGTGGTTCATCGAGTACACTAACA 353
                       * *  * *  * ** ** *   ***     **  **  *  *** * ***    **   

consensus_5353#0      ACAACAGGTGATACCAGTCCAGATGGTGAAAGGTAAGTGGAAGAAGCAGAAGAAAAAGAT 475
consensus_5353#1      CTGACCAGTCATG---GATCATCTAATGATTGTTATA-ATAATAATCACAACCAAACTCT 409
                         **  ** **    *  **  *  ***  * **     ** ** ** **  ***   *

consensus_5353#0      GATGA-TGGCGGTGTTGATGAAGATGATGATGGAGTATTGATAGGATCACATTCTTTAAC 534
consensus_5353#1      TACAAATGGTCGTACCAATG-------CAATAAAGTCTTTGCGTGATTATGCTTTTCAAC 462
                       *  * ***  **    ***         **  *** **     *** *   * ** ***

consensus_5353#0      GTCTTCTAGTATTGTTGTTAATTCTTCACCTCTTTCATTAGGAATTGGTCTATCATCGCA 594
consensus_5353#1      GACA------ATCATCGC-AATCCCCTAATCGGTCTACT--GAAATTGTCAATATGCACA 513
                      * *       **  * *  *** *   *     *  * *  *** * *** **   * **

consensus_5353#0      ATCTTCACCGATAACAATTACATCATTATCATCAAATATTGAAAATTCTACTACCACTCA 654
consensus_5353#1      CTAATCAACGCTT----------------------------------------------- 526
                       *  *** ** *                                                

consensus_5353#0      TAATAGTAATTTTACCGGCACTGAACGTAG 684
consensus_5353#1      ------------------------------
                                                    




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)