These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5355#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 646 fasta sequence [AGCAACTTATACCCCATTAATAATTGATGAAAATAATAATCATACTAATAAAAACAATACTGATAAATCATTTTCAATGATCACTTCATCATCTGTTTGTGTTCAATTAGGTGATGATCAACCACGAATTCGTCTTGTTCAAATTGATGGTAACAATCATGAAAATGAAGACATTTTAAAGCATGTCTATTGGACGTTGGATGAATTAGAGGAAATCTTGAACTCTGGCAAACAACCAGAAATTTAACGTTTCGTAGACATTAGGTTATTTTACAACCTTGTTTTCCTACAGTGTATAACGTCATAATATTTGTTGTTTTTTCTTTTTGAATGGGGGCATCATGTAGAAGGACTAAGTTTGTTTTTGAAAAAAATATTTCTTGAAAATAATTTGTTTTTTATTGCTTTCCCCCCATCTTTTAGTCATATTTGCTATGCCTGTGATTGAATTTTCTATGGTTTGTTTTAATTGCATCATTGTACTAATCATTTGAATTGGTGAATTTTTTTTCCCTTTTTTAGTGTACTATTAATTTCAAGGTTCCAATTATTTATGTTTGAAAGTTGGTATATTCAACTGATGTATCATTNTTTTCTAGACATAAATATATACGTTGNTCANAAAGT-ATCTANNAT-ATAGAGAAAG] [+] EMBL CD078887 [AGCAACTTATACCCCATTAATAATTGATGAAAATAATAATCATACTAATAAAAACAATACTGATAAATCATTTTCAATGATCACTTCATCATCTGTTTGTGTTCAATTAGGTGATGATCAACCACGAATTCGTCTTGTTCAAATTGATGGTAACAATCATGAAAATGAAGACATTTTAAAGCATGTCTATTGGACGTTGGATGAATTAGAGGAAATCTTGAACTCTGGCAAACAACCAGAAATTTAACGTTTCGTAGACATTAGGTTATTTTACAACCTTGTTTTCCTACAGTGTATAACGTCATAATATTTGTTGTTTTTTCTTTTTGAATGGGGGCATCATGTAGAAGGACTAAGTTTGTTTTTGAAAAAAATATTTCTTGAAAATAATTTGTTTTTTATTGCTTTCCCCCCATCTTTTAGTCATATTTGCTATGCCTGTGATTGAATTTTCTATGGTTTGTTTTAATTGCATCATTGTACTAATCATTTGAATTGGTGAATTTTTTTTCCCTTTTTTAGTGTACTATTAATTTCAAGGTTCCAATTATTTATGTTTGAAAGTTGGTATATTCAACTGATGTATCATTNTTTTCTAGACATAAATATATACGTTGNTCANAAAGT ATCTANNAT ATAGAGAAA ] [-] EMBL CD073346 [ TATACCCCATTAATAATTGATGAAAATAATAATCATACTAATAAAAACAATACTGATAAATCATTTTCAATGATCACTTCATCATCTGTTTGTGTTCAATTAGGTGATGATCAACCAGGAATTCGTCTTGTTCAAATTGATGGTAACAATCATGAAAATGAAGACATTTTAAAGCATGTCTATTGGACGTTGGATGAATTAGAGGAAATCTTGAACTCTGGCAAACAACCAGAAATTTAACGTTTCGTAGACATTAGGTTATTTTACAACCTTGTTTTCCTACAGTGTATAACGTCATAATATTTGTTGTTTTTTCTTTTTGAATGGGGGCATCATGTAGAAGGACTAAGTTTGTTTTTGAAAAAAATATTTCTTGAAAATAATTTGTTTTTTATTGCTTTCCCCCCATCTTTTAGTCATATTTGCTATGCCTGTGATTGAATTTTCTATGGTTTGTTTTAATTGCATCATTGTACTAATCATTTGAATTGGTGAATTTTTTTTCCCTTTTTTAGTGTACTATTAATTTCAAGGTTCCAATTATTTATGTTTGAAAGTTGGTATATTCAACTGATGTATCATTTTTTTCTAGACATAAATATATACGTTGTTCA AAAGTAATCTA AATAATAGAGAAAG] consensusID : consensus_5355#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [TTTTTGATGGGGGCTTCTTGTGGAGGGCTAAGTTTGTTTTTGTGTAATATTGGGAATATTTTTTCTTGAAAAATATTTTGTTTTTTATTGCTTTCCCCCCTTCTTTTAGTCATATTTGCTTTGCCTGTGATTGATTTTCTTTGGTTTGTTTTATTTGCATTATTGTTCTAATCATTTGAATTGGTGAATTTTTTTTCCTTTTTTTAGTGTACTATTAATTTCAAGGTTCCAATTATTTATGTTTGAAAGTTGGTATATTCAACTGATGTATCATTTTTTTCTAGACATAAATATATACGTTGTTCAAAAGTAATCTAAATAATAGAGAAAG] [-] EMBL AA999600 [TTTTTGATGGGGGCTTCTTGTGGAGGGCTAAGTTTGTTTTTGTGTAATATTGGGAATATTTTTTCTTGAAAAATATTTTGTTTTTTATTGCTTTCCCCCCTTCTTTTAGTCATATTTGCTTTGCCTGTGATTGATTTTCTTTGGTTTGTTTTATTTGCATTATTGTTCTAATCATTTGAATTGGTGAATTTTTTTTCCTTTTTTTAGTGTACTATTAATTTCAAGGTTCCAATTATTTATGTTTGAAAGTTGGTATATTCAACTGATGTATCATTTTTTTCTAGACATAAATATATACGTTGTTCAAAAGTAATCTAAATAATAGAGAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5355#0 AGCAACTTATACCCCATTAATAATTGATGAAAATAATAATCATACTAATAAAAACAATAC 60 consensus_5355#1 ------------------------------------------------------------ consensus_5355#0 TGATAAATCATTTTCAATGATCACTTCATCATCTGTTTGTGTTCAATTAGGTGATGATCA 120 consensus_5355#1 ------------------------------------------------------------ consensus_5355#0 ACCACGAATTCGTCTTGTTCAAATTGATGGTAACAATCATGAAAATGAAGACATTTTAAA 180 consensus_5355#1 ------------------------------------------------------------ consensus_5355#0 GCATGTCTATTGGACGTTGGATGAATTAGAGGAAATCTTGAACTCTGGCAAACAACCAGA 240 consensus_5355#1 ------------------------------------------------------------ consensus_5355#0 AATTTAACGTTTCGTAGACATTAGGTTATTTTACAACCTTGTTTTCCTACAGTGTATAAC 300 consensus_5355#1 ------------------------------------------------------------ consensus_5355#0 GTCATAATATTTGTTGTTTTTTCTTTTTGAATGGGGGCATCATGTAGAAGGACTAAGTTT 360 consensus_5355#1 ------------------------TTTTTGATGGGGGCTTCTTGTGGA-GGGCTAAGTTT 35 **** ******** ** *** ** ** ******** consensus_5355#0 GTTTTTGAAAAA-------AATATTTCTT----GAAAATAATTTGTTTTTTATTGCTTTC 409 consensus_5355#1 GTTTTTGTGTAATATTGGGAATATTTTTTCTTGAAAAATATTTTGTTTTTTATTGCTTTC 95 ******* ** ******* ** ****** ******************* consensus_5355#0 CCCCCATCTTTTAGTCATATTTGCTATGCCTGTGATTGAATTTTCTATGGTTTGTTTTAA 469 consensus_5355#1 CCCCCTTCTTTTAGTCATATTTGCTTTGCCTGTGATTGA-TTTTCTTTGGTTTGTTTTAT 154 ***** ******************* ************* ****** ************ consensus_5355#0 TTGCATCATTGTACTAATCATTTGAATTGGTGAATTTTTTTTCCCTTTTTTAGTGTACTA 529 consensus_5355#1 TTGCATTATTGTTCTAATCATTTGAATTGGTGAATTTTTTTTCCTTTTTTTAGTGTACTA 214 ****** ***** ******************************* *************** consensus_5355#0 TTAATTTCAAGGTTCCAATTATTTATGTTTGAAAGTTGGTATATTCAACTGATGTATCAT 589 consensus_5355#1 TTAATTTCAAGGTTCCAATTATTTATGTTTGAAAGTTGGTATATTCAACTGATGTATCAT 274 ************************************************************ consensus_5355#0 TNTTTTCTAGACATAAATATATACGTTGNTCANAAAGTATCTANNATATAGAGAAAG 646 consensus_5355#1 TTTTTTCTAGACATAAATATATACGTTGTTCAAAAGTAATCTAAATAATAGAGAAAG 331 * ************************** *** ** ***** ********** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||