These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5358#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 524 fasta sequence [TCCGAATAAAATGATAATCTCACAAGATCTTTTAATATCTCTGTATCAGGTCGAAGATTTGGATCATTGAGAGAAATACTGCACAATTTCGGAAACCAAATAGATAGGCAAACTAACACAGCTGAAATTGGTTGTAGTGTCCAGAATTTCAAAAATGTAGAAGAGTGTGGATGTGAACAATTCTCTATTACGGCATCAGTCAGATGATATTGAAGCAGAAAGTGAATACATTTCACAATAATTCGTTTACAAGAATTTTTATGTGGGTCAGATAAGCAACTAAATAAACGCAAAGCAAGACATACTTCTATTAATAAATAAGTAATCTGAGATGAATTAACTGTCATATTAGTTAAATCAAATAACTTGTCTAAATTTAGAATTCGTTCATTCACTTGTTGTTCAATAATACTAGTTGATACC-TTTGTAAACGATTTATTGGAATAGGGACATAATACCAAATTAATGGAACCAGACGTTTGAACTAATCAAATCTGTATTTGAATTCGTATAGATAAAGTTAA] [+] EMBL CD129511 [TCCGAATAAAATGATAATCTCACAAGATCTTTTAATATCTCTGTATCAGGTCGAAGATTTGGATCATTGAGAGAAATACTGCACAATTTCGGAAACCAAATAGATAGGCAAACTAACACAGCTGAAATTGGTTGTAGTGTCCAGAATTTCAAAAATGTAGAAGAGTGTGGATGTGAACAATTCTCTATTACGGCATCAGTCAGATGATATTGAAGCAGAAAGTGAATACATTTCACAATAATTCGTTTACAAGAATTTTTATGTGGGTCAGATAAGCAACTAAATAAACGCAAAGCAAGACATACTTCTATTAATAAATAAGTAATCTGAGATGAATTAACTGTCATATTAGTTAAATCAAATAACTTGTCTAAATTTAGAATTCGTTCATTCACTTGTTGTTCAATAATACTAGTTGATACC TTTGTAAACGATTTATTGGAATAGGGACATAATACCAAATTAATGGAACCAGACGTTTGAACT ] [+] EMBL CD129645 [ TAAGCAACTAAATAAACGCAAAGCAAGACATACTTCTATTAATAAATAAGTAATCTGAGATGAATTAACTGTCATATTAGTTAAATCAAATAACTTGTCTAAATTTAGAATTCGTTCATTCACTTGTTGGTCAATAATACTAGTTGATACCTTTTGTAAACGATTTATTGGAATAGGGACATAATACCAAATTAAT GAACCAGACG TTGAACTAATCAAATCTGTATTTGAATTCGTATAGATAAAGTTAA] consensusID : consensus_5358#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 240 fasta sequence [CTTGTCACTACCTTGGCGATCAGTCAGATGATATTGAAGCAGAAAGTGAATACATTTCACAATAATTCGTTTACAAGAATTTTTATGTGGGTCAGATAAGCAACTAAATAAACGCAAAGCAAGACATACTTCTATTAATAAATAAAGTAATCTGAGATGAATTAACTGTCATATTAGTTAAATCAAATAACTTGTCTAAATTTAGAATTCGTTCATTCACTTGTTGTTCAATAATACTAG] [+] EMBL CD160104 [CTTGTCACTACCTTGGCGATCAGTCAGATGATATTGAAGCAGAAAGTGAATACATTTCACAATAATTCGTTTACAAGAATTTTTATGTGGGTCAGATAAGCAACTAAATAAACGCAAAGCAAGACATACTTCTATTAATAAATAAAGTAATCTGAGATGAATTAACTGTCATATTAGTTAAATCAAATAACTTGTCTAAATTTAGAATTCGTTCATTCACTTGTTGTTCAATAATACTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5358#0 TCCGAATAAAATGATAATCTCACAAGATCTTTTAATATCTCTGTATCAGGTCGAAGATTT 60 consensus_5358#1 ------------------------------------------------------------ consensus_5358#0 GGATCATTGAGAGAAATACTGCACAATTTCGGAAACCAAATAGATAGGCAAACTAACACA 120 consensus_5358#1 ------------------------------------------------------------ consensus_5358#0 GCTGAAATTGGTTGTAGTGTCCAGAATTTCAAAAATGTAGAAGAGTGTGGATGTGAACAA 180 consensus_5358#1 ---------------------------------------------------------CTT 3 * consensus_5358#0 TTCTCTATTACGGC-ATCAGTCAGATGATATTGAAGCAGAAAGTGAATACATTTCACAAT 239 consensus_5358#1 GTCACTACCTTGGCGATCAGTCAGATGATATTGAAGCAGAAAGTGAATACATTTCACAAT 63 ** *** *** ********************************************* consensus_5358#0 AATTCGTTTACAAGAATTTTTATGTGGGTCAGATAAGCAACTAAATAAACGCAAAGCAAG 299 consensus_5358#1 AATTCGTTTACAAGAATTTTTATGTGGGTCAGATAAGCAACTAAATAAACGCAAAGCAAG 123 ************************************************************ consensus_5358#0 ACATACTTCTATTAATAAATAA-GTAATCTGAGATGAATTAACTGTCATATTAGTTAAAT 358 consensus_5358#1 ACATACTTCTATTAATAAATAAAGTAATCTGAGATGAATTAACTGTCATATTAGTTAAAT 183 ********************** ************************************* consensus_5358#0 CAAATAACTTGTCTAAATTTAGAATTCGTTCATTCACTTGTTGTTCAATAATACTAGTTG 418 consensus_5358#1 CAAATAACTTGTCTAAATTTAGAATTCGTTCATTCACTTGTTGTTCAATAATACTAG--- 240 ********************************************************* consensus_5358#0 ATACCTTTGTAAACGATTTATTGGAATAGGGACATAATACCAAATTAATGGAACCAGACG 478 consensus_5358#1 ------------------------------------------------------------ consensus_5358#0 TTTGAACTAATCAAATCTGTATTTGAATTCGTATAGATAAAGTTAA 524 consensus_5358#1 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||