These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5359#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 382 fasta sequence [AATCATATTCTGAAGAAAAACAAACAATAATCAGTTTCTAAGAAATATCAAATACTTAAAAAGTGTCTATATCTTTCTTCCGTAGTTTTCATGAGGTTTTCACTGAATTGAACCTCAGTGATCTCCAATCTTGTTTCACTGTGTTTTATAGTCGTTAAACTATTCAAATCGTTGACATCTGAGTTCTTTTAAATGATTCAATCAGAAGCATTGTTTACTAAACATCAAACATCATTCTTCCACTTCATTATTGATCATACACCATTTTCAGTAATGATGACACAAGAGAATTCCACAAAACGTTTCAGAATTTGCAATCGTAAAATCCTTCAGGATATCTATTGGCGATTTGACGATCTGTATGCTGAGGATACACTATCCT] [+] EMBL CD113032 [AATCATATTCTGAAGAAAAACAAACAATAATCAGTTTCTAAGAAATATCAAATACTTAAAAAGTGTCTATATCTTTCTTCCGTAGTTTTCATGAGGTTTTCACTGAATTGAACCTCAGTGATCTCCAATCTTGTTTCACTGTGTTTTATAGTCGTTAAACTATTCAAATCGTTGACATCTGAGTTCTTTTAAATGATTCAATCAGAAGCATTGTTTACTAAACATCAAACATCATTCTTCCACTTCATTATTGATCATACACCATTTTCAGTAATGATGACACAAGAGAATTCCACAAAACGTTTCAGAATTTGCAATCGTAAAATCCTTCAGGATATCTATTGGCGATTTGACGATCTGTATGCTGAGGATACACTATCCT] [-] EMBL CD161467 [ TACACCATTTTCAGTAATGATGACACAAGAGAATTCCACAAAACGTTTCAGAATTTGCAATCGTAAAATCCTTCAGGATATCTATTGGCGATTTGACGA ] consensusID : consensus_5359#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 153 fasta sequence [ACTGTTCGGATCGTTGACATCCGAGTTCTTCTAAATGATTCAATCAGAAGCATTTTTTACTAAACATCAAACATCATTCTTTCACTTCATTATTCATCATACACTATTCTCAGTTATGATGACACAAGACAATTCCACAAAACGTTGCAGAAT] [+] EMBL CD120777 [ACTGTTCGGATCGTTGACATCCGAGTTCTTCTAAATGATTCAATCAGAAGCATTTTTTACTAAACATCAAACATCATTCTTTCACTTCATTATTCATCATACACTATTCTCAGTTATGATGACACAAGACAATTCCACAAAACGTTGCAGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5359#0 AATCATATTCTGAAGAAAAACAAACAATAATCAGTTTCTAAGAAATATCAAATACTTAAA 60 consensus_5359#1 ------------------------------------------------------------ consensus_5359#0 AAGTGTCTATATCTTTCTTCCGTAGTTTTCATGAGGTTTTCACTGAATTGAACCTCAGTG 120 consensus_5359#1 ------------------------------------------------------------ consensus_5359#0 ATCTCCAATCTTGTTTCACTGTGTTTTATAGTCGTTAAACTATTCAAATCGTTGACATCT 180 consensus_5359#1 --------------------------------------ACTGTTCGGATCGTTGACATCC 22 *** *** ************ consensus_5359#0 GAGTTCTTTTAAATGATTCAATCAGAAGCATTGTTTACTAAACATCAAACATCATTCTTC 240 consensus_5359#1 GAGTTCTTCTAAATGATTCAATCAGAAGCATTTTTTACTAAACATCAAACATCATTCTTT 82 ******** *********************** ************************** consensus_5359#0 CACTTCATTATTGATCATACACCATTTTCAGTAATGATGACACAAGAGAATTCCACAAAA 300 consensus_5359#1 CACTTCATTATTCATCATACACTATTCTCAGTTATGATGACACAAGACAATTCCACAAAA 142 ************ ********* *** ***** ************** ************ consensus_5359#0 CGTTTCAGAATTTGCAATCGTAAAATCCTTCAGGATATCTATTGGCGATTTGACGATCTG 360 consensus_5359#1 CGTTGCAGAAT------------------------------------------------- 153 **** ****** consensus_5359#0 TATGCTGAGGATACACTATCCT 382 consensus_5359#1 ---------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||