cluster # 5359

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 5359 cluster # 5359 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5359#0 length = 382 sequences # 2

consensus_5359#1 length = 153 sequences # 1

consensusID : consensus_5359#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 382
fasta sequence

                              [AATCATATTCTGAAGAAAAACAAACAATAATCAGTTTCTAAGAAATATCAAATACTTAAAAAGTGTCTATATCTTTCTTCCGTAGTTTTCATGAGGTTTTCACTGAATTGAACCTCAGTGATCTCCAATCTTGTTTCACTGTGTTTTATAGTCGTTAAACTATTCAAATCGTTGACATCTGAGTTCTTTTAAATGATTCAATCAGAAGCATTGTTTACTAAACATCAAACATCATTCTTCCACTTCATTATTGATCATACACCATTTTCAGTAATGATGACACAAGAGAATTCCACAAAACGTTTCAGAATTTGCAATCGTAAAATCCTTCAGGATATCTATTGGCGATTTGACGATCTGTATGCTGAGGATACACTATCCT]

[+] EMBL CD113032             [AATCATATTCTGAAGAAAAACAAACAATAATCAGTTTCTAAGAAATATCAAATACTTAAAAAGTGTCTATATCTTTCTTCCGTAGTTTTCATGAGGTTTTCACTGAATTGAACCTCAGTGATCTCCAATCTTGTTTCACTGTGTTTTATAGTCGTTAAACTATTCAAATCGTTGACATCTGAGTTCTTTTAAATGATTCAATCAGAAGCATTGTTTACTAAACATCAAACATCATTCTTCCACTTCATTATTGATCATACACCATTTTCAGTAATGATGACACAAGAGAATTCCACAAAACGTTTCAGAATTTGCAATCGTAAAATCCTTCAGGATATCTATTGGCGATTTGACGATCTGTATGCTGAGGATACACTATCCT]
[-] EMBL CD161467             [                                                                                                                                                                                                                                                                 TACACCATTTTCAGTAATGATGACACAAGAGAATTCCACAAAACGTTTCAGAATTTGCAATCGTAAAATCCTTCAGGATATCTATTGGCGATTTGACGA                          ]




>consensus_5359#0
AATCATATTCTGAAGAAAAACAAACAATAATCAGTTTCTAAGAAATATCAAATACTTAAA
AAGTGTCTATATCTTTCTTCCGTAGTTTTCATGAGGTTTTCACTGAATTGAACCTCAGTG
ATCTCCAATCTTGTTTCACTGTGTTTTATAGTCGTTAAACTATTCAAATCGTTGACATCT
GAGTTCTTTTAAATGATTCAATCAGAAGCATTGTTTACTAAACATCAAACATCATTCTTC
CACTTCATTATTGATCATACACCATTTTCAGTAATGATGACACAAGAGAATTCCACAAAA
CGTTTCAGAATTTGCAATCGTAAAATCCTTCAGGATATCTATTGGCGATTTGACGATCTG
TATGCTGAGGATACACTATCCT

consensusID : consensus_5359#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 153
fasta sequence

                              [ACTGTTCGGATCGTTGACATCCGAGTTCTTCTAAATGATTCAATCAGAAGCATTTTTTACTAAACATCAAACATCATTCTTTCACTTCATTATTCATCATACACTATTCTCAGTTATGATGACACAAGACAATTCCACAAAACGTTGCAGAAT]

[+] EMBL CD120777             [ACTGTTCGGATCGTTGACATCCGAGTTCTTCTAAATGATTCAATCAGAAGCATTTTTTACTAAACATCAAACATCATTCTTTCACTTCATTATTCATCATACACTATTCTCAGTTATGATGACACAAGACAATTCCACAAAACGTTGCAGAAT]




>consensus_5359#1
ACTGTTCGGATCGTTGACATCCGAGTTCTTCTAAATGATTCAATCAGAAGCATTTTTTAC
TAAACATCAAACATCATTCTTTCACTTCATTATTCATCATACACTATTCTCAGTTATGAT
GACACAAGACAATTCCACAAAACGTTGCAGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5359#0      AATCATATTCTGAAGAAAAACAAACAATAATCAGTTTCTAAGAAATATCAAATACTTAAA 60
consensus_5359#1      ------------------------------------------------------------
                                                                                  

consensus_5359#0      AAGTGTCTATATCTTTCTTCCGTAGTTTTCATGAGGTTTTCACTGAATTGAACCTCAGTG 120
consensus_5359#1      ------------------------------------------------------------
                                                                                  

consensus_5359#0      ATCTCCAATCTTGTTTCACTGTGTTTTATAGTCGTTAAACTATTCAAATCGTTGACATCT 180
consensus_5359#1      --------------------------------------ACTGTTCGGATCGTTGACATCC 22
                                                            *** ***  ************ 

consensus_5359#0      GAGTTCTTTTAAATGATTCAATCAGAAGCATTGTTTACTAAACATCAAACATCATTCTTC 240
consensus_5359#1      GAGTTCTTCTAAATGATTCAATCAGAAGCATTTTTTACTAAACATCAAACATCATTCTTT 82
                      ******** *********************** ************************** 

consensus_5359#0      CACTTCATTATTGATCATACACCATTTTCAGTAATGATGACACAAGAGAATTCCACAAAA 300
consensus_5359#1      CACTTCATTATTCATCATACACTATTCTCAGTTATGATGACACAAGACAATTCCACAAAA 142
                      ************ ********* *** ***** ************** ************

consensus_5359#0      CGTTTCAGAATTTGCAATCGTAAAATCCTTCAGGATATCTATTGGCGATTTGACGATCTG 360
consensus_5359#1      CGTTGCAGAAT------------------------------------------------- 153
                      **** ******                                                 

consensus_5359#0      TATGCTGAGGATACACTATCCT 382
consensus_5359#1      ----------------------