cluster # 5364

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Schistosoma mansoni
cluster # 5364 cluster # 5364 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5364#0 length = 352 sequences # 2

consensus_5364#1 length = 154 sequences # 1

consensusID : consensus_5364#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 352
fasta sequence

                              [TTTAATTTCTCTATGTGTAAATTCATGAAAGAAAAATTGCATTGTAATATCGAACAAGAATTTAATCTTTTTTTTTCTTTTCATACTTATTTATTCTATCAATATTGTGAATAACTAGATAAAATATTAAGAGTCTTTTAATGAGAAATGGGCTTTTTTAATGATGGGATTTAAAATAATAATAATAAAGTAACCATTTTGATCATATATCTCTCGTGGTCCATGTTATTTTGACGCAATTATTGTAAATAAAGGATCAAGAGATCTGATGTATATTTAATCAAAAAGTGTCGATTATGAAATGTATTTCAAGAGTATGTTAATGTCATTATTACAATACCCTAATACATTT]

[+] EMBL SMAA69202            [TTTAATTTCTCTATGTGTAAATTCATGAAAGAAAAATTGCATTGTAATATCGAACAAGAATTTAATCTTTTTTTTTCTTTTCATACTTATTTATTCTATCAATATTGTGAATAACTAGATAAAATATTAAGAGTCTTTTAATGAGAAATGGGCTTTT                                                                                                                                                                                                   ]
[+] EMBL AI740294             [                                                                                                                AACTAGATAAAATATTAAGAGTCTTTTAATGAGAAATGGGCTTTTTTAATGATGGGATTTAAAATAATAATAATAAAGTAACCATTTTGATCATATATCTCTCGTGGTCCATGTTATTTTGACGCAATTATTGTAAATAAAGGATCAAGAGATCTGATGTATATTTAATCAAAAAGTGTCGATTATGAAATGTATTTCAAGAGTATGTTAATGTCATTATTACAATACCCTAATACATTT]




>consensus_5364#0
TTTAATTTCTCTATGTGTAAATTCATGAAAGAAAAATTGCATTGTAATATCGAACAAGAA
TTTAATCTTTTTTTTTCTTTTCATACTTATTTATTCTATCAATATTGTGAATAACTAGAT
AAAATATTAAGAGTCTTTTAATGAGAAATGGGCTTTTTTAATGATGGGATTTAAAATAAT
AATAATAAAGTAACCATTTTGATCATATATCTCTCGTGGTCCATGTTATTTTGACGCAAT
TATTGTAAATAAAGGATCAAGAGATCTGATGTATATTTAATCAAAAAGTGTCGATTATGA
AATGTATTTCAAGAGTATGTTAATGTCATTATTACAATACCCTAATACATTT

consensusID : consensus_5364#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 154
fasta sequence

                              [TAAATGTATTAGAGTATTTGTAATAATGACATTAACATACTCTTGAAATACATTCCATAATCGACATTTGTTCACTTACCGGCTACTCTCAGATCTCTTGACTTCTTTATCTTACAATAATTGGTCGTACTCAAATTTAACCATGGACCACGAG]

[+] EMBL AI740290             [TAAATGTATTAGAGTATTTGTAATAATGACATTAACATACTCTTGAAATACATTCCATAATCGACATTTGTTCACTTACCGGCTACTCTCAGATCTCTTGACTTCTTTATCTTACAATAATTGGTCGTACTCAAATTTAACCATGGACCACGAG]




>consensus_5364#1
TAAATGTATTAGAGTATTTGTAATAATGACATTAACATACTCTTGAAATACATTCCATAA
TCGACATTTGTTCACTTACCGGCTACTCTCAGATCTCTTGACTTCTTTATCTTACAATAA
TTGGTCGTACTCAAATTTAACCATGGACCACGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5364#0      TTTAATTTCTCTATGTGTAAATTCATGAAAGAAAAATTGCATTGTAATATCGAACAAGAA 60
consensus_5364#1      ------------------------------------------------------------
                                                                                  

consensus_5364#0      TTTAATCTTTTTTTTTCTTTTCATACTTATTTATTCTATCAATATTGTGAATAACTAGAT 120
consensus_5364#1      ------------------------------------------------------------
                                                                                  

consensus_5364#0      AAAATATTAAGAGTCTTTTAATGAGAAATGGGCTTTTTTAATGATGGGATTTAAAATAAT 180
consensus_5364#1      -----------------TAAATGTATTA-GAGTATTTGTAATAATGACATT-AACATACT 41
                                       * ****    * * *  *** **** ***  *** ** *** *

consensus_5364#0      AATAATAAAGTAACCATTTTGATCATATATCT-CTCGTGGTCCATGTTATTTTGACGCAA 239
consensus_5364#1      CTTGAAATACATTCCATAATCGACATTTGTTCACTTACCGGCTACTCTCAGATCTCTTGA 101
                        * * * *    ****  *   *** * *   **    * * *   *    *  *   *

consensus_5364#0      TTATTGTAAATAAAGGATCAAGAGATCTGATGTATATTTAATCAAAAAGTGTCGATTATG 299
consensus_5364#1      CTTCTTTATCTTACAA--TAATTGGTCGTACTCAAATTTAACCATGGACCACGAG----- 154
                       *  * **  * *      **  * **  *   * ****** **   *            

consensus_5364#0      AAATGTATTTCAAGAGTATGTTAATGTCATTATTACAATACCCTAATACATTT 352
consensus_5364#1      -----------------------------------------------------