cluster # 5389

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Schistosoma mansoni
cluster # 5389 cluster # 5389 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5389#0 length = 282 sequences # 2

consensus_5389#1 length = 211 sequences # 1

consensusID : consensus_5389#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 282
fasta sequence

                              [GTACGGAAAACGGCCTTGAGTACTCAAATAGTTCTGGACGTAGTTAAAGCCTATGCTTAACGGGCTTCCTTATCTAGTAGCAATGGGTTTAACTAAGAAAATCACGTCTCCAGCTGATGTACGTCAGTGGACTTCTTCCATCGCTTGTAATGAGATTCTTAACCTAATAAACAGTGTTAATAGTAAATTGGTCTCTCGTCCAATCCAGGATAATTTAAAATCTTCTAAGGCCATAATGTTTGTGTATGAAGTGCTTGACAAGTTGCAGCAAGCAATCGAAGA]

[+] EMBL CD159116             [GTACGGAAAACGGCCTTGAGTACTCAAATAGTTCTGGACGTAGTTAAAGCCTATGCTTAACGGGCTTCCTTATCTAGTAGCAATGGGTTTAACTAAGAAAATCACGTCTCCAGCTGATGTACGTCAGTGGACTTCTTCCATCGCTTGTAATGAGATTCTTAACCTAATAAACAGTGTTAATAGTAAATTGGTCTCTCGTCCAATCCAGGATAATTTAAAATCTTCTAAGGCCATAATGTTTGTGTATGAAGTGCTTGA                        ]
[-] EMBL CD149832             [                                                                                                                                                            TCTTAACCTGATAAACAGTGTTAATAGTAAATTGGTCTCTCGTCCAATCCAGGATAATTTAGAATGTTATAAGGCCATAATGTTTGTGTATGAAGTGCTTGACAAGTTGCAGCAAGCAATCGAAGA]




>consensus_5389#0
GTACGGAAAACGGCCTTGAGTACTCAAATAGTTCTGGACGTAGTTAAAGCCTATGCTTAA
CGGGCTTCCTTATCTAGTAGCAATGGGTTTAACTAAGAAAATCACGTCTCCAGCTGATGT
ACGTCAGTGGACTTCTTCCATCGCTTGTAATGAGATTCTTAACCTAATAAACAGTGTTAA
TAGTAAATTGGTCTCTCGTCCAATCCAGGATAATTTAAAATCTTCTAAGGCCATAATGTT
TGTGTATGAAGTGCTTGACAAGTTGCAGCAAGCAATCGAAGA

consensusID : consensus_5389#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 211
fasta sequence

                              [AGTTCTGGACGTAGTTAAAGCCTATGCTTAACGGGCTTCCTTATCTAGTAGCAATGGGTTTAACTAAGAAAATCACGTCTCCAGCTGATGTACGTCAGTGGACTTCTTCCATCGCTTGTAATGAGATTCTTAACCTAATAAACAGTGTTAATAGTAAATTGGTCTCTCGTCCAATCCAGGATAATTTAAAATCTTCTAAGGTGTTTTGGAA]

[+] EMBL CD077570             [AGTTCTGGACGTAGTTAAAGCCTATGCTTAACGGGCTTCCTTATCTAGTAGCAATGGGTTTAACTAAGAAAATCACGTCTCCAGCTGATGTACGTCAGTGGACTTCTTCCATCGCTTGTAATGAGATTCTTAACCTAATAAACAGTGTTAATAGTAAATTGGTCTCTCGTCCAATCCAGGATAATTTAAAATCTTCTAAGGTGTTTTGGAA]




>consensus_5389#1
AGTTCTGGACGTAGTTAAAGCCTATGCTTAACGGGCTTCCTTATCTAGTAGCAATGGGTT
TAACTAAGAAAATCACGTCTCCAGCTGATGTACGTCAGTGGACTTCTTCCATCGCTTGTA
ATGAGATTCTTAACCTAATAAACAGTGTTAATAGTAAATTGGTCTCTCGTCCAATCCAGG
ATAATTTAAAATCTTCTAAGGTGTTTTGGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5389#0      GTACGGAAAACGGCCTTGAGTACTCAAATAGTTCTGGACGTAGTTAAAGCCTATGCTTAA 60
consensus_5389#1      -----------------------------AGTTCTGGACGTAGTTAAAGCCTATGCTTAA 31
                                                   *******************************

consensus_5389#0      CGGGCTTCCTTATCTAGTAGCAATGGGTTTAACTAAGAAAATCACGTCTCCAGCTGATGT 120
consensus_5389#1      CGGGCTTCCTTATCTAGTAGCAATGGGTTTAACTAAGAAAATCACGTCTCCAGCTGATGT 91
                      ************************************************************

consensus_5389#0      ACGTCAGTGGACTTCTTCCATCGCTTGTAATGAGATTCTTAACCTAATAAACAGTGTTAA 180
consensus_5389#1      ACGTCAGTGGACTTCTTCCATCGCTTGTAATGAGATTCTTAACCTAATAAACAGTGTTAA 151
                      ************************************************************

consensus_5389#0      TAGTAAATTGGTCTCTCGTCCAATCCAGGATAATTTAAAATCTTCTAAGGCCATAATGTT 240
consensus_5389#1      TAGTAAATTGGTCTCTCGTCCAATCCAGGATAATTTAAAATCTTCTAAGG------TGTT 205
                      **************************************************      ****

consensus_5389#0      TGTGTATGAAGTGCTTGACAAGTTGCAGCAAGCAATCGAAGA 282
consensus_5389#1      TTGGAA------------------------------------ 211
                      *  * *