cluster # 5391

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 5391 cluster # 5391 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5391#0 length = 1065 sequences # 1

consensus_5391#1 length = 518 sequences # 1
consensus_5391#2 length = 250 sequences # 1

consensusID : consensus_5391#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1065
fasta sequence

                              [CAGNAATTCGGCACGAGGGCGAATCATGAATAGTAATACANGTGAAACCAGAATTTTGTGATAGTTCAATTGCATTAGCTGATGAACCAAGCTTATCCGATCAAAGTGAATATCATGAATTATGTAGCGAAAATGAATTCATTAAAAATAATCATACAACATGTGATTTATTATATGATAACAAAGAAGAAATGTTTAAACTTCGTAAACTATTTCATTTTGCTGCTGGTATTGTATATTCATCTGGCTTACTCTATTCACCTCATCTTCTTTCATTAATGTCTGTTGCATTACTTATTGTATTTTGGTGTTTTGAATGGATTCGAAGACGAGGGCCATCTACTCTTTCCTCCTACCTTAGTACTTTGGTTGATCCATTTCGTGATAAACGAGATTCTGGTGATATTTTATTCACACCTATTGCTCTTTTACTCGGTTTAAGTATTCCTGTTTGGTGGCCACAAAATAGAAATACTAATAGAAGTATGATTAGTATTGATTGATTGAAGATGGACGAACCCATTGTATTCCGGCTTGATTATTCAATCACCGAAACTGTTTTATGTTCACAGAACTGTTTAAAATTATCATTTAAATATAGATAAGGCAACCTATGCTACGAATTGGATGTGAAGCCGTCATCATGGTCAGGCGTTCTGTCAATAGCTGTAGGCGATAGTTNTGCTGCATTGATTGGACGAGCTTACGGAAAGCGTCGTTGGCCTGGATCACATCGAACATTCCTAGGATCTTTCGCTTCTTTCTTTTCTCAAATTATTGTATGGACAGTGATATCATATTATTATTCATGGCATTGGTTAACCGGTATTATTCCTTTATTAATCGGTGTACTTATTGAAGCATATATTGATCAAATTNGATATTTAGTTATACCATTAATTTGTATGCTCATGTTTATAGTTTGTACAATGATACTCTTTTACTATGGGATGATGTACTTGCTAGATTCCTTATTTCACTACTTGGNGATGTTGTTATTTGCTGCTGGACTATCATGAGTTGTTTACTATGTAGGCTATATGTCGCTATTGACATAATGTATGA]

[+] EMBL CD081558             [CAGNAATTCGGCACGAGGGCGAATCATGAATAGTAATACANGTGAAACCAGAATTTTGTGATAGTTCAATTGCATTAGCTGATGAACCAAGCTTATCCGATCAAAGTGAATATCATGAATTATGTAGCGAAAATGAATTCATTAAAAATAATCATACAACATGTGATTTATTATATGATAACAAAGAAGAAATGTTTAAACTTCGTAAACTATTTCATTTTGCTGCTGGTATTGTATATTCATCTGGCTTACTCTATTCACCTCATCTTCTTTCATTAATGTCTGTTGCATTACTTATTGTATTTTGGTGTTTTGAATGGATTCGAAGACGAGGGCCATCTACTCTTTCCTCCTACCTTAGTACTTTGGTTGATCCATTTCGTGATAAACGAGATTCTGGTGATATTTTATTCACACCTATTGCTCTTTTACTCGGTTTAAGTATTCCTGTTTGGTGGCCACAAAATAGAAATACTAATAGAAGTATGATTAGTATTGATTGATTGAAGATGGACGAACCCATTGTATTCCGGCTTGATTATTCAATCACCGAAACTGTTTTATGTTCACAGAACTGTTTAAAATTATCATTTAAATATAGATAAGGCAACCTATGCTACGAATTGGATGTGAAGCCGTCATCATGGTCAGGCGTTCTGTCAATAGCTGTAGGCGATAGTTNTGCTGCATTGATTGGACGAGCTTACGGAAAGCGTCGTTGGCCTGGATCACATCGAACATTCCTAGGATCTTTCGCTTCTTTCTTTTCTCAAATTATTGTATGGACAGTGATATCATATTATTATTCATGGCATTGGTTAACCGGTATTATTCCTTTATTAATCGGTGTACTTATTGAAGCATATATTGATCAAATTNGATATTTAGTTATACCATTAATTTGTATGCTCATGTTTATAGTTTGTACAATGATACTCTTTTACTATGGGATGATGTACTTGCTAGATTCCTTATTTCACTACTTGGNGATGTTGTTATTTGCTGCTGGACTATCATGAGTTGTTTACTATGTAGGCTATATGTCGCTATTGACATAATGTATGA]




>consensus_5391#0
CAGNAATTCGGCACGAGGGCGAATCATGAATAGTAATACANGTGAAACCAGAATTTTGTG
ATAGTTCAATTGCATTAGCTGATGAACCAAGCTTATCCGATCAAAGTGAATATCATGAAT
TATGTAGCGAAAATGAATTCATTAAAAATAATCATACAACATGTGATTTATTATATGATA
ACAAAGAAGAAATGTTTAAACTTCGTAAACTATTTCATTTTGCTGCTGGTATTGTATATT
CATCTGGCTTACTCTATTCACCTCATCTTCTTTCATTAATGTCTGTTGCATTACTTATTG
TATTTTGGTGTTTTGAATGGATTCGAAGACGAGGGCCATCTACTCTTTCCTCCTACCTTA
GTACTTTGGTTGATCCATTTCGTGATAAACGAGATTCTGGTGATATTTTATTCACACCTA
TTGCTCTTTTACTCGGTTTAAGTATTCCTGTTTGGTGGCCACAAAATAGAAATACTAATA
GAAGTATGATTAGTATTGATTGATTGAAGATGGACGAACCCATTGTATTCCGGCTTGATT
ATTCAATCACCGAAACTGTTTTATGTTCACAGAACTGTTTAAAATTATCATTTAAATATA
GATAAGGCAACCTATGCTACGAATTGGATGTGAAGCCGTCATCATGGTCAGGCGTTCTGT
CAATAGCTGTAGGCGATAGTTNTGCTGCATTGATTGGACGAGCTTACGGAAAGCGTCGTT
GGCCTGGATCACATCGAACATTCCTAGGATCTTTCGCTTCTTTCTTTTCTCAAATTATTG
TATGGACAGTGATATCATATTATTATTCATGGCATTGGTTAACCGGTATTATTCCTTTAT
TAATCGGTGTACTTATTGAAGCATATATTGATCAAATTNGATATTTAGTTATACCATTAA
TTTGTATGCTCATGTTTATAGTTTGTACAATGATACTCTTTTACTATGGGATGATGTACT
TGCTAGATTCCTTATTTCACTACTTGGNGATGTTGTTATTTGCTGCTGGACTATCATGAG
TTGTTTACTATGTAGGCTATATGTCGCTATTGACATAATGTATGA

consensusID : consensus_5391#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence

                              [TAGATAAGGCAACCTATGCTACGAATTGGATGTGAAGCCGTCATCATGGTCAGGCGTTCTGTCAATAGCTGTAGGCGATAGTTTTGCTGCATTGATTGGACGAGCTTACGGAAAGCGTCGTTGGCCTGGATCACATCGAACATTCCTAGGATCTTTCGCTTCTTTCTTTTCTCAAATTATTGTATGGACAGTGATATCATATTATTATTCATGGCATTGGTTAACCGGTATTATTCCTTTATTAATCGGTGTACTTATTGAAGCATATATTGATCAAATTGATAATTTAGTTATACCATTAATTGTTATGCTCATGTTTCATAGTTTGTAACAATGATACTCTTTTAACTATGGATTGTATGTACTTGCTTAGATTCCTTTATTTTCTACTACATTTGGTGTATGTTTGTTTATTTGCTTGCTTGTGTACATAATCAATTGATGTTTGTTTTTAACTATTGTTAAGGCCTAGTAATTGTTCGCTTATTTTGAGCAATAAAATGTTAATGAACGAAGTC]

[-] EMBL CD075384             [TAGATAAGGCAACCTATGCTACGAATTGGATGTGAAGCCGTCATCATGGTCAGGCGTTCTGTCAATAGCTGTAGGCGATAGTTTTGCTGCATTGATTGGACGAGCTTACGGAAAGCGTCGTTGGCCTGGATCACATCGAACATTCCTAGGATCTTTCGCTTCTTTCTTTTCTCAAATTATTGTATGGACAGTGATATCATATTATTATTCATGGCATTGGTTAACCGGTATTATTCCTTTATTAATCGGTGTACTTATTGAAGCATATATTGATCAAATTGATAATTTAGTTATACCATTAATTGTTATGCTCATGTTTCATAGTTTGTAACAATGATACTCTTTTAACTATGGATTGTATGTACTTGCTTAGATTCCTTTATTTTCTACTACATTTGGTGTATGTTTGTTTATTTGCTTGCTTGTGTACATAATCAATTGATGTTTGTTTTTAACTATTGTTAAGGCCTAGTAATTGTTCGCTTATTTTGAGCAATAAAATGTTAATGAACGAAGTC]




>consensus_5391#1
TAGATAAGGCAACCTATGCTACGAATTGGATGTGAAGCCGTCATCATGGTCAGGCGTTCT
GTCAATAGCTGTAGGCGATAGTTTTGCTGCATTGATTGGACGAGCTTACGGAAAGCGTCG
TTGGCCTGGATCACATCGAACATTCCTAGGATCTTTCGCTTCTTTCTTTTCTCAAATTAT
TGTATGGACAGTGATATCATATTATTATTCATGGCATTGGTTAACCGGTATTATTCCTTT
ATTAATCGGTGTACTTATTGAAGCATATATTGATCAAATTGATAATTTAGTTATACCATT
AATTGTTATGCTCATGTTTCATAGTTTGTAACAATGATACTCTTTTAACTATGGATTGTA
TGTACTTGCTTAGATTCCTTTATTTTCTACTACATTTGGTGTATGTTTGTTTATTTGCTT
GCTTGTGTACATAATCAATTGATGTTTGTTTTTAACTATTGTTAAGGCCTAGTAATTGTT
CGCTTATTTTGAGCAATAAAATGTTAATGAACGAAGTC

consensusID : consensus_5391#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 250
fasta sequence

                              [GAATTCGGCACGAGGTTCATTTTATTGATGTTTTGGCTATGCTTATTTATGTTATGTGTTTATATTACTATCATTTATCGTTGTTCTAATCATAACATTTACCGAATCATGAATAGTAATACAGTGAAACCAGAATTTTGTGATAGTTCAATTGCATTAGCTGATGAACCAAGCTTATCCGATCAAAGTGAATATCATGAATTATGTAGCGAAAATGATTCATTAAAATAATCATACGACATGTGATTTA]

[+] EMBL CD077488             [GAATTCGGCACGAGGTTCATTTTATTGATGTTTTGGCTATGCTTATTTATGTTATGTGTTTATATTACTATCATTTATCGTTGTTCTAATCATAACATTTACCGAATCATGAATAGTAATACAGTGAAACCAGAATTTTGTGATAGTTCAATTGCATTAGCTGATGAACCAAGCTTATCCGATCAAAGTGAATATCATGAATTATGTAGCGAAAATGATTCATTAAAATAATCATACGACATGTGATTTA]




>consensus_5391#2
GAATTCGGCACGAGGTTCATTTTATTGATGTTTTGGCTATGCTTATTTATGTTATGTGTT
TATATTACTATCATTTATCGTTGTTCTAATCATAACATTTACCGAATCATGAATAGTAAT
ACAGTGAAACCAGAATTTTGTGATAGTTCAATTGCATTAGCTGATGAACCAAGCTTATCC
GATCAAAGTGAATATCATGAATTATGTAGCGAAAATGATTCATTAAAATAATCATACGAC
ATGTGATTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5391#0      CAGNAATTCGGCACGAGGGCGAATCATGAATAGTAATACANGTGAAACCAGAATTTTGTG 60
consensus_5391#1      ------------------------------------------------------------
consensus_5391#2      ------------------------------------------------------------
                                                                                  

consensus_5391#0      ATAGTTCAATTGCATTAGCTGATGAACCAAGCTTATCCGATCAAAGTGAATATCATGAAT 120
consensus_5391#1      ------------------------------------------------------------
consensus_5391#2      ------------------------------------------------------------
                                                                                  

consensus_5391#0      TATGTAGCGAAAATGAATTCATTAAAAATAATCATACAACATGTGATTTATTATATGATA 180
consensus_5391#1      ------------------------------------------------------------
consensus_5391#2      ------------------------------------------------------------
                                                                                  

consensus_5391#0      ACAAAGAAGAAATGTTTAAACTTCGTAAACTATTTCATTTTGCTGCTGGTATTGTATATT 240
consensus_5391#1      ------------------------------------------------------------
consensus_5391#2      ------------------------------------------------------------
                                                                                  

consensus_5391#0      CATCTGGCTTACTCTATTCACCTCATCTTCTTTCATTAATGTCTGTTGCATTACTTATTG 300
consensus_5391#1      ------------------------------------------------------------
consensus_5391#2      ------------------------------------------------------------
                                                                                  

consensus_5391#0      TATTTTGGTGTTTTGAATGGATTCGAAGACGAGGGCCATCTACTCTTTCCTCCTACCTTA 360
consensus_5391#1      ------------------------------------------------------------
consensus_5391#2      ------------------------------------------------------------
                                                                                  

consensus_5391#0      GTACTTTGGTTGATCCATTTCGTGATAAACGAGATTCTGGTGATATTTTATTCACACCTA 420
consensus_5391#1      ------------------------------------------------------------
consensus_5391#2      ------------------------------------------------------------
                                                                                  

consensus_5391#0      TTGCTCTTTTACTCGGTTTAAGTATTCCTGTTTGGTGGCCACAAAATAGAAATACTAATA 480
consensus_5391#1      ------------------------------------------------------------
consensus_5391#2      ------------------------------------------------------------
                                                                                  

consensus_5391#0      GAAGTATGATTAGTATTGATTGATTGAAGATGGACGAACCCATTGTATTCCGGCTTGATT 540
consensus_5391#1      ------------------------------------------------------------
consensus_5391#2      ------------------------------------------------------------
                                                                                  

consensus_5391#0      ATTCAATCACCGAAACTGTTTTATGTTCACAGAACTGTTTAAAATTATCATTTAAATATA 600
consensus_5391#1      ----------------------------------------------------------TA 2
consensus_5391#2      ------------------------------------------------------------
                                                                                  

consensus_5391#0      GATAAGGCAACCTATGCTACGAATTGGATGTGAAGCCGTCATCATGGTCAGGCGTTCTGT 660
consensus_5391#1      GATAAGGCAACCTATGCTACGAATTGGATGTGAAGCCGTCATCATGGTCAGGCGTTCTGT 62
consensus_5391#2      ------------------------------------------------------------
                                                                                  

consensus_5391#0      CAATAGCTGTAGGCGATAGTTNTGCTGCATTGATTGGACGAGCTTACGGAAAGCGTCGTT 720
consensus_5391#1      CAATAGCTGTAGGCGATAGTTTTGCTGCATTGATTGGACGAGCTTACGGAAAGCGTCGTT 122
consensus_5391#2      ------------------------------------------------------------
                                                                                  

consensus_5391#0      GGCCTGGATCACATCGAACATTCCTAGGATCTTTCGCTTCTTTCTTTTCTCAAATTATTG 780
consensus_5391#1      GGCCTGGATCACATCGAACATTCCTAGGATCTTTCGCTTCTTTCTTTTCTCAAATTATTG 182
consensus_5391#2      --------------------------------------GAATTCGGCACGAGGTTCATTT 22
                                                               ***    *     * *** 

consensus_5391#0      TATGGACAGTGATATCATATTATTATTCATGGCATTGGTTAACCGGTATTATTCCTTTAT 840
consensus_5391#1      TATGGACAGTGATATCATATTATTATTCATGGCATTGGTTAACCGGTATTATTCCTTTAT 242
consensus_5391#2      TATTGATGTTTTGGCTATGC--TTATTTATGTTATGTGTTTA----TATTACTA--TCAT 74
                      *** **   *      **    ***** ***  **  *** *    ***** *   * **

consensus_5391#0      TAATCGGTGTACTTATTGAAGCATATATTGA-TCA-AATTNGATATTTAGTTATACCATT 898
consensus_5391#1      TAATCGGTGTACTTATTGAAGCATATATTGA-TCA-AATTGATAATTTAGTTATACCATT 300
consensus_5391#2      TTATCGTTGTTCTAATCATAACATTTACCGAATCATGAATAGTAATACAGTGAAACCAGA 134
                      * **** *** ** **   * *** **  ** ***  * *    **  *** * ****  

consensus_5391#0      AATT-TGTATGCTCATGTTT-ATAGTTTGTA-CAATGATACTCTTTTA-CTATGGGATG- 953
consensus_5391#1      AATT-GTTATGCTCATGTTTCATAGTTTGTAACAATGATACTCTTTTAACTATGGATTGT 359
consensus_5391#2      ATTTTGTGATAGTTCAATTGCATTAGCTG-ATGAACCAAGCTTATCCGATCAAAG--TGA 191
                      * **    **  *    **  **    ** *  **  *  **  *      *  *  ** 

consensus_5391#0      ATGTACTTGCT-AGATTCCTTATTTC-ACTACTTGGNGATGTTGTTATTTGCTGCTGGAC 1011
consensus_5391#1      ATGTACTTGCTTAGATTCCTTTATTT-TCTACTACATTTGGTGTATGTTTGTTTATTTGC 418
consensus_5391#2      ATATCATGAATTATGTAGCGAAAATGATTCATTAAAATAATCATACGACATGTGATTTA- 250
                      ** *  *   * *  *  *     *     * *                   *  *    

consensus_5391#0      TATCATGAGTTGTTTACTA--TGTAGGCTATATGTCGCTATTGACATAATGTATGA---- 1065
consensus_5391#1      TTGCTTGTGTACATAATCAATTGATGTTTGTTTTTAACTATTGTTAAGGCCTAGTAATTG 478
consensus_5391#2      ------------------------------------------------------------
                                                                                  

consensus_5391#0      ----------------------------------------
consensus_5391#1      TTCGCTTATTTTGAGCAATAAAATGTTAATGAACGAAGTC 518
consensus_5391#2      ----------------------------------------