These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5395#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence [GTGCCTCAGGCTACGAATCAGCTTCATTCGCTGCTGATGGTGGTGCTGCTGGATTCGGTGGTGCTGCTGCTGGATTTGGTGGTGCTTCATCATTCGAATCATCATCATTCGAATCATCATCGGCTGGTTATGGCGCTGGTGCTGGTGCCGCTTATTCAGCTTCAGCTGGTGCTTTCGATGCTTCAGCTGCCAATGTTCAAACAAGCCAAGTAGCTGTTCAACAATATGCAACTGATGCTCAAGGTCTCTTCAAAGATCCTAACCCACAAATTATCCGACGAGCAGCTGTTGGTGGTGTTCAAACCTATACTCAAAACATCAAAGTCCGATTTCTTCAACCACCACCTCTTCCACCTCCAGGCCCACTCATCATCAAAGAAGTGCGACCACCTCAACCACCTCCACCACCACCACTTCGCATTCGTCAACAAGCTCCACCTCTCCCAACACCACCACCACTCATTCTCCGTGAACGACCACCACAACCACCCGCTGTCCAAGCTTCACAAACTGTCATCCGTCGTTTACCTGGTTTGGCTGTCCCACCACGATCGGTCATCATC] [+] EMBL CD091608 [GTGCCTCAGGCTACGAATCAGCTTCATTCGCTGCTGATGGTGGTGCTGCTGGATTCGGTGGTGCTGCTGCTGGATTTGGTGGTGCTTCATCATTCGAATCATCATCATTCGAATCATCATCGGCTGGTTATGGCGCTGGTGCTGGTGCCGCTTATTCAGCTTCAGCTGGTGCTTTCGATGCTTCAGCTGCCAATGTTCAAACAAGCCAAGTAGCTGTTCAACAATATGCAACTGATGCTCAAGGTCTCTTCAAAGATCCTAACCCACAAATTATCCGACGAGCAGCTGTTGGTGGTGTTCAAACCTATACTCAAAACATCAAAGTCCGATTTCTTCAACCACCACCTCTTCCACCTCCAGGCCCACTCATCATCAAAGAAGTGCGACCACCTCAACCACCTCCACCACCACCACTTCGCATTCGTCAACAAGCTCCACCTCTCCCAACACCACCACCACTCATTCTCCGTGAACGACCACCACAACCACCCGCTGTCCAAGCTTCACAAACTGTCATCCGTCGTTTACCTGGTTTGGCTGTCCCACCACGATCGGTCATCATC] consensusID : consensus_5395#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [ATCATCCTACGAATCATCATCATTCTCATCTGGTGGTGGTGCTGGTGGATTTGATGCTGCTTCATTCGGTGGAGCTGCTGGTGGATACGGTGGATCATCATCCTACGAATCATCATCATTCTCATCTGGTGGTGGTGCTGGTGGATTCGATGCTGCTTCATTCGGTGGAGCTGCTGGTGGTGCCGGTTTTGGTGGAGCAAGCTATCAAACATCGACCACACAAGTCCAACAATATGCTACCGATGCTCAAGGTCTCTTCAAAGATCCTAAC] [-] EMBL CD093140 [ATCATCCTACGAATCATCATCATTCTCATCTGGTGGTGGTGCTGGTGGATTTGATGCTGCTTCATTCGGTGGAGCTGCTGGTGGATACGGTGGATCATCATCCTACGAATCATCATCATTCTCATCTGGTGGTGGTGCTGGTGGATTCGATGCTGCTTCATTCGGTGGAGCTGCTGGTGGTGCCGGTTTTGGTGGAGCAAGCTATCAAACATCGACCACACAAGTCCAACAATATGCTACCGATGCTCAAGGTCTCTTCAAAGATCCTAAC] consensusID : consensus_5395#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 208 fasta sequence [TCCTTCTCATCTGGTGGTGGTGCTGGTGGATTCGATGCTGCTTCATTCGGTGGAGCTGCTGGTGGATTCGGTGGATCATCATCCTTTGAATCATCATCCTACTCATCAAGTGGCTTCGGTGGTGCTGCTGGTGGTGCTGGTGATGCTTTCGGTGCTGCTGACACCAACAATGACGGCAAACTCGATCAAGGTGAATTCCGAAGCTTCC] [+] EMBL CD089354 [TCCTTCTCATCTGGTGGTGGTGCTGGTGGATTCGATGCTGCTTCATTCGGTGGAGCTGCTGGTGGATTCGGTGGATCATCATCCTTTGAATCATCATCCTACTCATCAAGTGGCTTCGGTGGTGCTGCTGGTGGTGCTGGTGATGCTTTCGGTGCTGCTGACACCAACAATGACGGCAAACTCGATCAAGGTGAATTCCGAAGCTTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5395#0 GTGCCTCAGGCTACGAATCAGCTTCATTCGCTGCTGATGGTGGTGCTGCTGGATTCGGTG 60 consensus_5395#1 ----ATCATCCTACGAATCATCATCATTCTCATCTGGTGGTGGTGCTGGTGGATTTGATG 56 consensus_5395#2 -----------------------TCCTTCTCATCTGGTGGTGGTGCTGGTGGATTCGATG 37 ** *** * *** *********** ****** * ** consensus_5395#0 GTGCTGCTGCTGGATTTGGTGGTGCTTCATCATTCGAATCATCATCATTCGAATCATCAT 120 consensus_5395#1 CTGCTTCATTCGGTGGAGCTGCTGGTGGATACGGTGGATCATCATCCTACGAATCATCAT 116 consensus_5395#2 CTGCTTCATTCGGTGGAGCTGCTGGTGGATTCGGTGGATCATCATCCTTTGAATCATCAT 97 **** * ** * ** ** * ** * ********* * ********** consensus_5395#0 CGGCTGGTTATGGCGCTGGTGCTGGTGCCGCTTATTCAGCTTCAGCTGGTGCTTTCGATG 180 consensus_5395#1 CATTCTCATCTGGTGGTGGTGCTGGTGGATTCGATGCTGCTTCATTCGGTGGAGCTGCTG 176 consensus_5395#2 CCTACTCATCAAGTGGCTTCGGTGGTGCTGCTGGTGGTGCT---GGTGATGCTTTCGGTG 154 * * * * * ***** * *** * ** * ** consensus_5395#0 CTTCAGCTGCCAATGTTCA-AACAAGC---CAAGTAGCT---------GTTCAACAATAT 227 consensus_5395#1 GTGGTGCCGGTTTTGGTGG-AGCAAGCTATCAAACATCGACCACACAAGTCCAACAATAT 235 consensus_5395#2 CTGCTGACACCAACAATGACGGCAAAC--TCGATCAAGG------TGAATTCCGAAGCTT 206 * * * *** * * * * * * * * consensus_5395#0 GCAACTGATGCTCAAGGTCTCTTCAAAGATCCTAACCCACAAATTATCCGACGAGCAGCT 287 consensus_5395#1 GCTACCGATGCTCAAGGTCTCTTCAAAGATCCTAAC------------------------ 271 consensus_5395#2 CC---------------------------------------------------------- 208 * consensus_5395#0 GTTGGTGGTGTTCAAACCTATACTCAAAACATCAAAGTCCGATTTCTTCAACCACCACCT 347 consensus_5395#1 ------------------------------------------------------------ consensus_5395#2 ------------------------------------------------------------ consensus_5395#0 CTTCCACCTCCAGGCCCACTCATCATCAAAGAAGTGCGACCACCTCAACCACCTCCACCA 407 consensus_5395#1 ------------------------------------------------------------ consensus_5395#2 ------------------------------------------------------------ consensus_5395#0 CCACCACTTCGCATTCGTCAACAAGCTCCACCTCTCCCAACACCACCACCACTCATTCTC 467 consensus_5395#1 ------------------------------------------------------------ consensus_5395#2 ------------------------------------------------------------ consensus_5395#0 CGTGAACGACCACCACAACCACCCGCTGTCCAAGCTTCACAAACTGTCATCCGTCGTTTA 527 consensus_5395#1 ------------------------------------------------------------ consensus_5395#2 ------------------------------------------------------------ consensus_5395#0 CCTGGTTTGGCTGTCCCACCACGATCGGTCATCATC 563 consensus_5395#1 ------------------------------------ consensus_5395#2 ------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||