cluster # 5395

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Schistosoma mansoni
cluster # 5395 cluster # 5395 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5395#0 length = 563 sequences # 1

consensus_5395#1 length = 271 sequences # 1
consensus_5395#2 length = 208 sequences # 1

consensusID : consensus_5395#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 563
fasta sequence

                              [GTGCCTCAGGCTACGAATCAGCTTCATTCGCTGCTGATGGTGGTGCTGCTGGATTCGGTGGTGCTGCTGCTGGATTTGGTGGTGCTTCATCATTCGAATCATCATCATTCGAATCATCATCGGCTGGTTATGGCGCTGGTGCTGGTGCCGCTTATTCAGCTTCAGCTGGTGCTTTCGATGCTTCAGCTGCCAATGTTCAAACAAGCCAAGTAGCTGTTCAACAATATGCAACTGATGCTCAAGGTCTCTTCAAAGATCCTAACCCACAAATTATCCGACGAGCAGCTGTTGGTGGTGTTCAAACCTATACTCAAAACATCAAAGTCCGATTTCTTCAACCACCACCTCTTCCACCTCCAGGCCCACTCATCATCAAAGAAGTGCGACCACCTCAACCACCTCCACCACCACCACTTCGCATTCGTCAACAAGCTCCACCTCTCCCAACACCACCACCACTCATTCTCCGTGAACGACCACCACAACCACCCGCTGTCCAAGCTTCACAAACTGTCATCCGTCGTTTACCTGGTTTGGCTGTCCCACCACGATCGGTCATCATC]

[+] EMBL CD091608             [GTGCCTCAGGCTACGAATCAGCTTCATTCGCTGCTGATGGTGGTGCTGCTGGATTCGGTGGTGCTGCTGCTGGATTTGGTGGTGCTTCATCATTCGAATCATCATCATTCGAATCATCATCGGCTGGTTATGGCGCTGGTGCTGGTGCCGCTTATTCAGCTTCAGCTGGTGCTTTCGATGCTTCAGCTGCCAATGTTCAAACAAGCCAAGTAGCTGTTCAACAATATGCAACTGATGCTCAAGGTCTCTTCAAAGATCCTAACCCACAAATTATCCGACGAGCAGCTGTTGGTGGTGTTCAAACCTATACTCAAAACATCAAAGTCCGATTTCTTCAACCACCACCTCTTCCACCTCCAGGCCCACTCATCATCAAAGAAGTGCGACCACCTCAACCACCTCCACCACCACCACTTCGCATTCGTCAACAAGCTCCACCTCTCCCAACACCACCACCACTCATTCTCCGTGAACGACCACCACAACCACCCGCTGTCCAAGCTTCACAAACTGTCATCCGTCGTTTACCTGGTTTGGCTGTCCCACCACGATCGGTCATCATC]




>consensus_5395#0
GTGCCTCAGGCTACGAATCAGCTTCATTCGCTGCTGATGGTGGTGCTGCTGGATTCGGTG
GTGCTGCTGCTGGATTTGGTGGTGCTTCATCATTCGAATCATCATCATTCGAATCATCAT
CGGCTGGTTATGGCGCTGGTGCTGGTGCCGCTTATTCAGCTTCAGCTGGTGCTTTCGATG
CTTCAGCTGCCAATGTTCAAACAAGCCAAGTAGCTGTTCAACAATATGCAACTGATGCTC
AAGGTCTCTTCAAAGATCCTAACCCACAAATTATCCGACGAGCAGCTGTTGGTGGTGTTC
AAACCTATACTCAAAACATCAAAGTCCGATTTCTTCAACCACCACCTCTTCCACCTCCAG
GCCCACTCATCATCAAAGAAGTGCGACCACCTCAACCACCTCCACCACCACCACTTCGCA
TTCGTCAACAAGCTCCACCTCTCCCAACACCACCACCACTCATTCTCCGTGAACGACCAC
CACAACCACCCGCTGTCCAAGCTTCACAAACTGTCATCCGTCGTTTACCTGGTTTGGCTG
TCCCACCACGATCGGTCATCATC

consensusID : consensus_5395#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence

                              [ATCATCCTACGAATCATCATCATTCTCATCTGGTGGTGGTGCTGGTGGATTTGATGCTGCTTCATTCGGTGGAGCTGCTGGTGGATACGGTGGATCATCATCCTACGAATCATCATCATTCTCATCTGGTGGTGGTGCTGGTGGATTCGATGCTGCTTCATTCGGTGGAGCTGCTGGTGGTGCCGGTTTTGGTGGAGCAAGCTATCAAACATCGACCACACAAGTCCAACAATATGCTACCGATGCTCAAGGTCTCTTCAAAGATCCTAAC]

[-] EMBL CD093140             [ATCATCCTACGAATCATCATCATTCTCATCTGGTGGTGGTGCTGGTGGATTTGATGCTGCTTCATTCGGTGGAGCTGCTGGTGGATACGGTGGATCATCATCCTACGAATCATCATCATTCTCATCTGGTGGTGGTGCTGGTGGATTCGATGCTGCTTCATTCGGTGGAGCTGCTGGTGGTGCCGGTTTTGGTGGAGCAAGCTATCAAACATCGACCACACAAGTCCAACAATATGCTACCGATGCTCAAGGTCTCTTCAAAGATCCTAAC]




>consensus_5395#1
ATCATCCTACGAATCATCATCATTCTCATCTGGTGGTGGTGCTGGTGGATTTGATGCTGC
TTCATTCGGTGGAGCTGCTGGTGGATACGGTGGATCATCATCCTACGAATCATCATCATT
CTCATCTGGTGGTGGTGCTGGTGGATTCGATGCTGCTTCATTCGGTGGAGCTGCTGGTGG
TGCCGGTTTTGGTGGAGCAAGCTATCAAACATCGACCACACAAGTCCAACAATATGCTAC
CGATGCTCAAGGTCTCTTCAAAGATCCTAAC

consensusID : consensus_5395#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 208
fasta sequence

                              [TCCTTCTCATCTGGTGGTGGTGCTGGTGGATTCGATGCTGCTTCATTCGGTGGAGCTGCTGGTGGATTCGGTGGATCATCATCCTTTGAATCATCATCCTACTCATCAAGTGGCTTCGGTGGTGCTGCTGGTGGTGCTGGTGATGCTTTCGGTGCTGCTGACACCAACAATGACGGCAAACTCGATCAAGGTGAATTCCGAAGCTTCC]

[+] EMBL CD089354             [TCCTTCTCATCTGGTGGTGGTGCTGGTGGATTCGATGCTGCTTCATTCGGTGGAGCTGCTGGTGGATTCGGTGGATCATCATCCTTTGAATCATCATCCTACTCATCAAGTGGCTTCGGTGGTGCTGCTGGTGGTGCTGGTGATGCTTTCGGTGCTGCTGACACCAACAATGACGGCAAACTCGATCAAGGTGAATTCCGAAGCTTCC]




>consensus_5395#2
TCCTTCTCATCTGGTGGTGGTGCTGGTGGATTCGATGCTGCTTCATTCGGTGGAGCTGCT
GGTGGATTCGGTGGATCATCATCCTTTGAATCATCATCCTACTCATCAAGTGGCTTCGGT
GGTGCTGCTGGTGGTGCTGGTGATGCTTTCGGTGCTGCTGACACCAACAATGACGGCAAA
CTCGATCAAGGTGAATTCCGAAGCTTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5395#0      GTGCCTCAGGCTACGAATCAGCTTCATTCGCTGCTGATGGTGGTGCTGCTGGATTCGGTG 60
consensus_5395#1      ----ATCATCCTACGAATCATCATCATTCTCATCTGGTGGTGGTGCTGGTGGATTTGATG 56
consensus_5395#2      -----------------------TCCTTCTCATCTGGTGGTGGTGCTGGTGGATTCGATG 37
                                             ** *** *  *** *********** ****** * **

consensus_5395#0      GTGCTGCTGCTGGATTTGGTGGTGCTTCATCATTCGAATCATCATCATTCGAATCATCAT 120
consensus_5395#1      CTGCTTCATTCGGTGGAGCTGCTGGTGGATACGGTGGATCATCATCCTACGAATCATCAT 116
consensus_5395#2      CTGCTTCATTCGGTGGAGCTGCTGGTGGATTCGGTGGATCATCATCCTTTGAATCATCAT 97
                       **** *    **    * ** ** *  **     * ********* *  **********

consensus_5395#0      CGGCTGGTTATGGCGCTGGTGCTGGTGCCGCTTATTCAGCTTCAGCTGGTGCTTTCGATG 180
consensus_5395#1      CATTCTCATCTGGTGGTGGTGCTGGTGGATTCGATGCTGCTTCATTCGGTGGAGCTGCTG 176
consensus_5395#2      CCTACTCATCAAGTGGCTTCGGTGGTGCTGCTGGTGGTGCT---GGTGATGCTTTCGGTG 154
                      *       *   * *     * *****       *   ***      * **     * **

consensus_5395#0      CTTCAGCTGCCAATGTTCA-AACAAGC---CAAGTAGCT---------GTTCAACAATAT 227
consensus_5395#1      GTGGTGCCGGTTTTGGTGG-AGCAAGCTATCAAACATCGACCACACAAGTCCAACAATAT 235
consensus_5395#2      CTGCTGACACCAACAATGACGGCAAAC--TCGATCAAGG------TGAATTCCGAAGCTT 206
                       *   *          *     *** *   * *  *             * *   *   *

consensus_5395#0      GCAACTGATGCTCAAGGTCTCTTCAAAGATCCTAACCCACAAATTATCCGACGAGCAGCT 287
consensus_5395#1      GCTACCGATGCTCAAGGTCTCTTCAAAGATCCTAAC------------------------ 271
consensus_5395#2      CC---------------------------------------------------------- 208
                       *                                                          

consensus_5395#0      GTTGGTGGTGTTCAAACCTATACTCAAAACATCAAAGTCCGATTTCTTCAACCACCACCT 347
consensus_5395#1      ------------------------------------------------------------
consensus_5395#2      ------------------------------------------------------------
                                                                                  

consensus_5395#0      CTTCCACCTCCAGGCCCACTCATCATCAAAGAAGTGCGACCACCTCAACCACCTCCACCA 407
consensus_5395#1      ------------------------------------------------------------
consensus_5395#2      ------------------------------------------------------------
                                                                                  

consensus_5395#0      CCACCACTTCGCATTCGTCAACAAGCTCCACCTCTCCCAACACCACCACCACTCATTCTC 467
consensus_5395#1      ------------------------------------------------------------
consensus_5395#2      ------------------------------------------------------------
                                                                                  

consensus_5395#0      CGTGAACGACCACCACAACCACCCGCTGTCCAAGCTTCACAAACTGTCATCCGTCGTTTA 527
consensus_5395#1      ------------------------------------------------------------
consensus_5395#2      ------------------------------------------------------------
                                                                                  

consensus_5395#0      CCTGGTTTGGCTGTCCCACCACGATCGGTCATCATC 563
consensus_5395#1      ------------------------------------
consensus_5395#2      ------------------------------------