These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5399#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 886 fasta sequence [AATATTTTAGGTCCTGATAGTTACCTATTTAGGTTTTATGAGAGTTGCATAAACTTTAGAAGCTCAAGGCACATTCGTAAGGGACAAACTATAATAATCCATCCTTTGGCATGAGTTAGTAGAGGCTTGAAGTCATATTACAGTTTGATCAACAACATTCACTGTCAGATATTAAAGGGTGGGCATACCAGTCGACCCGAAACTTATTAGATTCTGTTGATCTGTAAGCCATCTATAACTGTTTGTCCTAAACTACAATTCTAGTTTAAGGTCTAAAGATAAAGATAACTACGGTTTCAATATCAATGCGTCACTTTTTCAAACTCCACTTGACGTATTATGGTTTATGTAACTGGATGAAACCTGTAACCTTTACATAACAAATACATCACCAATACAAGAACTGAACCTTTTATTTAGCTAGTTAGATTGATATTACAAATAAAAAACCCTCGTTTTGCACTGCTTTTGATTACAGTGGGATCAATTTGTTGGATATTCTTCANAGTCTCAATGCACCTGAATGGCTAAGTAAACCCCTCCATTTAGGTGGGGGTACTGTGAATACTCTGGCTACAGCCATTGTATTCTACAAACTGATGGTACCGTTCCGCTACGGTTTAACACTCATATTAACCAGGTATTTAGTACGTTACCTTCGATTGAAAGGAAAAGCCCCACAAGTACAAGAAAATGATTGTTTACGAAACCTAGGTAAAGAAGGAGCAGAAATTTTACGAGAACGACTCAAAGCACGCATGGGTAGAAGCAGAAGAAATGTACTCATGAAGAGGAATCAACGATGATTTGTACAGCGACCTTGTAAAAAGAGTACCTTTTGTAATTGGACATTTTTTTTCATTTTAAACTTATCAATAAAAGGAGT] [+] EMBL CD078979 [AATATTTTAGGTCCTGATAGTTACCTATTTAGGTTTTATGAGAGTTGCATAAACTTTAGAAGCTCAAGGCACATTCGTAAGGGACAAACTATAATAATCCATCCTTTGGCATGAGTTAGTAGAGGCTTGAAGTCATATTACAGTTTGATCAACAACATTCACTGTCAGATATTAAAGGGTGGGCATACCAGTCGACCCGAAACTTATTAGATTCTGTTGATCTGTAAGCCATCTATAACTGTTTGTCCTAAACTACAATTCTAGTTTAAGGTCTAAAGATAAAGATAACTACGGTTTCAATATCAATGCGTCACTTTTTCAAACTCCACTTGACGTATTATGGTTTATGTAACTGGATGAAACCTGTAACCTTTACATAACAAATACATCACCAATACAAGAACTGAACCTTTTATTTAGCTAGTTAGATTGATATTACAAATAAAAAACCCTCGTTTTGCACTGCTTTTGATTACAGTGGGATCAATTTGTTGGATATTCTTCANAGTCTCAATGCACCTGAATGGCTAAGTAAACCCCTCCATTTAGGTGGGGGTACTGTGAATACTCTGGCTACAGCCATTGTATTCTACAAACTGATGGT ] [-] EMBL CD073430 [ CAATACAAGAACTGAACCTTTTATTTAGGTAGTTAGATTGATATTACAAATAAAAAACCCTCGTTTTGCACTGCTTTTGATTACAGTGGGATCAATTTGTTGGATATTTTTCAAAGTTTCAATGCACCTGAATGGGTAAGTAAACCCCTCCATTTAGGTGGGGGTACTGTGAATACTTTGGGTACAGCCATTGTATTTTACAAACTGATGGTACCGTTCCGCTACGGTTTAACACTCATATTAACCAGGTATTTAGTACGTTACCTTCGATTGAAAGGAAAAGCCCCACAAGTACAAGAAAATGATTGTTTACGAAACCTAGGTAAAGAAGGAGCAGAAATTTTACGAGAACGACTCAAAGCACGCATGGGTAGAAGCAGAAGAAATGTACTCATGAAGAGGAATCAACGATGATTTGTACAGCGACCTTGTAAAAAGAGTACCTTTTGTAATTGGACATTTTTTTTCATTTTAAACTTATCAATAAAAGGAGT] consensusID : consensus_5399#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [CGATTAGCAGGTACATAGTGCTTACTACCCAAATATCATGAATAAAACCTTAATCCTCGGTTTGAGGCACTATGTCACATTAAATGCAGTTTTTCCAAATTTTTATGCTCATCGGACTAAATTATCTCCTATCTGTAGAAATGACTCGAAATTCCATTCGGTTCGTTGCAACCAGATACAATACTCTCCATTCTCAAAAGTTTCACACCCTCCTAACTTTTTCAAAAGTCCTATCAGCTTGACAACTTATGCAAAGTTTTCTACCCAATCGGAGAACAATAGTCCATCAAATGTGAACGAAAACAATGAAAATGACTTGGAAAAAAGGAAATCTAGTCTAATAAAAAGATTCAAGGATGCCTATGCAATTTACGGGAAGGTTGTTCTGGTGATCCATGGTGTGACTTCATGTTTGTGGTTCGGACTGTTTTATTCACTGGCTTGCACTGGGATCAATTTGTTGGATATTCTTCANAGTCTCAATGCACCTGAATGGCTAAGT] [+] EMBL AI975262 [CGATTAGCAGGTACATAGTGCTTACTACCCAAATATCATGAATAAAACCTTAATCCTCGGTTTGAGGCACTATGTCACATTAAATGCAGTTTTTCCAAATTTTTATGCTCATCGGACTAAATTATCTCCTATCTGTAGAAATGACTCGAAATTCCATTCGGTTCGTTGCAACCAGATACAATACTCTCCATTCTCAAAAGTTTCACACCCTCCTAACTTTTTCAAAAGTCCTATCAGCTTGACAACTTATGCAAAGTTTTCTACCCAATCGGAGAACAATAGTCCATCAAATGTGAACGAAAACAATGAAAATGACTTGGAAAAAAGGAAATCTAGTCTAATAAAAAGATTCAAGGATGCCTATGCAATTTACGGGAAGGTTGTTCTGGTGATCCATGGTGTGACTTCATGTTTGTGGTTCGGACTGTTTTATTCACTGGCTTGCACTGGGATCAATTTGTTGGATATTCTTCANAGTCTCAATGCACCTGAATGGCTAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5399#0 AATATTTTAGGTCCTGATAGTTACCTATTTAGGTTTTATGAGAGTTGCATAAACTTTAGA 60 consensus_5399#1 --------------CGATTAGCAGGTACATAGTGCTTACTACCCAAATATCATGAATAAA 46 *** * ** *** *** * ** * ** * consensus_5399#0 AGCTCAAGGCACATTCGTAAGGGACAAACTATAATAATCCATCCTTTGGCATGAGTTAGT 120 consensus_5399#1 ACCTTAATCCTCGGTTTGAGGCACTATGTCACATTAAATGCAGTTTTTCCA--AATTTTT 104 * ** ** * * * * * * * * *** *** ** * ** * consensus_5399#0 AGAGGCTTGAAGTCATATTACAGTTTGATCAACAACATTCACTGTCAGATATTAAAGGGT 180 consensus_5399#1 ATGCTCATCGGACTAAATTATC-TCCTATCTGTAGAAATGACT-CGAAATTCCATTCGGT 162 * * * * **** * *** * * * *** * ** * *** consensus_5399#0 GGGCATACCAGTCGACCCGAAACTTATTAGATTCTGTTGATCTGTAAGCCATCTATAACT 240 consensus_5399#1 TCGT-TGCAACCAGATACAATACTC--TCCATTCTCAAAAGTTTCACACCCTCC-TAACT 218 * * * * ** * * *** * ***** * * * ** ** ***** consensus_5399#0 GTTTGTCCTAAACTACAATTCTAGTTTAAGGTCTAAAGATAAAGATAACTACGGTTTCAA 300 consensus_5399#1 TTTT---CAAAAGTCCTATC--AGCTTGACAACTTATG-CAAAGTTTTCTAC----CCAA 268 *** * *** * * ** ** ** * ** * * **** * **** *** consensus_5399#0 TATCAATGCGTCACTTTTTCAAACTCCACTTGACGTATTATGGTTTATGTAACTGGATGA 360 consensus_5399#1 TCGGAGAACAATAGTCCATCAAATGTGAACGAAAACAATGAAAATGACTTGGAAAAAAGG 328 * * * * * ***** * * * * * * * * * consensus_5399#0 AACCTGTAACCTTTACATAACAAATACATCACCAATACAAGA-ACTGAACCTTTTATTTA 419 consensus_5399#1 AAATCTAGTCTAATAAAAAGATTCAAGGATGCCTATGCAATTTACGGGAAGGTTGTTCTG 388 ** * ** * * * ** ** *** ** * * ** * * consensus_5399#0 GCTAGTTAGATTGATATTACAAATAAAAAACCCTCGTTTTGCACTGCTTTTGATTACAGT 479 consensus_5399#1 GTGATCCATGGTGTGACTTCATGTTTGTGGTTCGGACTGTTTTATTCACTGGCTTGCACT 448 * * * ** * * ** * * * * * * * * ** ** * consensus_5399#0 GGGATCAATTTGTTGGATATTCTTCANAGTCTCAATGCACCTGAATGGCTAAGTAAACCC 539 consensus_5399#1 GGGATCAATTTGTTGGATATTCTTCANAGTCTCAATGCACCTGAATGGCTAAGT------ 502 ****************************************************** consensus_5399#0 CTCCATTTAGGTGGGGGTACTGTGAATACTCTGGCTACAGCCATTGTATTCTACAAACTG 599 consensus_5399#1 ------------------------------------------------------------ consensus_5399#0 ATGGTACCGTTCCGCTACGGTTTAACACTCATATTAACCAGGTATTTAGTACGTTACCTT 659 consensus_5399#1 ------------------------------------------------------------ consensus_5399#0 CGATTGAAAGGAAAAGCCCCACAAGTACAAGAAAATGATTGTTTACGAAACCTAGGTAAA 719 consensus_5399#1 ------------------------------------------------------------ consensus_5399#0 GAAGGAGCAGAAATTTTACGAGAACGACTCAAAGCACGCATGGGTAGAAGCAGAAGAAAT 779 consensus_5399#1 ------------------------------------------------------------ consensus_5399#0 GTACTCATGAAGAGGAATCAACGATGATTTGTACAGCGACCTTGTAAAAAGAGTACCTTT 839 consensus_5399#1 ------------------------------------------------------------ consensus_5399#0 TGTAATTGGACATTTTTTTTCATTTTAAACTTATCAATAAAAGGAGT 886 consensus_5399#1 ----------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||