These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5406#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 814 fasta sequence [CCTGAATACTCATCACTTTGGCCATCATCTGGAGGCTGTCTCGACCAGTTTTTATCCAGTTTATGCGATCTGGAAATGAGCAATTGTTTGTTGTCAAAGTGGACAGAAATTGCCGAGATTTGTATTCAAGTTCCGTGGTTAAAATCCTTGAATGTCAGTAACAACCGCATTCGTCTACCTGTTTCTCCAAAAGAAGTACATGATAAACAAAAAGAAAATGAATGTCTGGAATCTAAACTTTTATATGACATATACTCAGACCCTGTCTTGAGTGAACGGTTGTGTTCGAACGCTTTTCCCCAGTTGTCGCAGCTTACTTTAGTCAAATGCCCACTCCTAAATTGGAAAAGTATTAGGATAATATTATGTTGGATGCCATCTTTACAGTCGTTATCTCTGGCTTACAATAATTTGGGCAATCCTCCAATTGACTGGGAAAAAAATGCTATTGATGCTTTCCAAAAGTTGACTGACTTAGACTTAACTCACATAAATCTAACGGCCGCTCATCAGTTATTCGCTCTTATTGGAGCCTCCAAATATCTAAACAACCTACTATTAAATTATAACGAAATAGCGGACATTCCAAATCTAAATAATCATTTGTTTCGAAACCTCAACACTCTTGGGTTAAAGAACAACTTATTCACANATTGGGAATTCGTTAATCAGTTACTGAATTTATCCAAATTGGATCATGTAATGGTATCAGGATGCCCAGTTTTCGAGAACTCTGTCAATATAGAAACCGCTCGTCAGGAAGTCATTGCCCGTTTGCCAAATCTTAAAATGTTAGATCGTGTCGAGATCACTC] [+] EMBL CD079465 [CCTGAATACTCATCACTTTGGCCATCATCTGGAGGCTGTCTCGACCAGTTTTTATCCAGTTTATGCGATCTGGAAATGAGCAATTGTTTGTTGTCAAAGTGGACAGAAATTGCCGAGATTTGTATTCAAGTTCCGTGGTTAAAATCCTTGAATGTCAGTAACAACCGCATTCGTCTACCTGTTTCTCCAAAAGAAGTACATGATAAACAAAAAGAAAATGAATGTCTGGAATCTAAACTTTTATATGACATATACTCAGACCCTGTCTTGAGTGAACGGTTGTGTTCGAACGCTTTTCCCCAGTTGTCGCAGCTTACTTTAGTCAAATGCCCACTCCTAAATTGGAAAAGTATTAGGATAATATTATGTTGGATGCCATCTTTACAGTCGTTATCTCTGGCTTACAATAATTTGGGCAATCCTCCAATTGACTGGGAAAAAAATGCTATTGATGCTTTCCAAAAGTTGACTGACTTAGACTTAACTCACATAAATCTAACGGCCGCTCATCAGTTATTCGCTCTTATTGGAGCCTCCAAATATCTAAACAACCTACTATTAAATTATAACGAAATAGCGGACATTCCAAATCTAAATAATCATTTGTTTCGAAACCTCAACACTCTTGGGTTAAAGAACAACTTATTCACANATTGGGAATTCGTTAATCAGTTACTGAA ] [+] EMBL CD078211 [ AGCGG ATTCCAAATCTAAATAATCATTTGTTTCGAAACCTCAACACTCTTGGGTTAAAGAACAACTTATTCACAAATTGGGATTTCGTTAATCAGTTACTGAATTTATCCAAATTGGATCATGTAATGGTATCAGGATGCCCAGTTTTCGAGAACTCTGTCAATATAGAAACCGCTCGTCAGGAAGTCATTGCCCGTTTGCCAAATCTTAAAATGTTAGATCGTGTCGAGATCACTC] consensusID : consensus_5406#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence [TCGCTACTCGAGGTATATTATGGAATGACTTTCTTCGTTGCGAAATCTTATGTTGGCGGTCAGATCATTGGTTGAAATTACATAAGCAAGTGAACTTTTGAAACTACACTGATAAATAAGTTAATATGAAATTACAGGGTTTTGGGAACAATATAGAAATCAGAAGTGTGCGACCATACAAAAATGAAATATTGTGTGAAGGTGAATCTTAGGAATTCCTGAAAGTTGAATGATGATGGGCATAACAAAAAGTTATTAGAATTGAAATAATGTAGAAATTAAAACTCTTAAGTCATTCTAGAAGCTATCTTTAAAACAGACTAAAAAAAATCTTGCTAAGTTGAGTAATCTGTCTAAATACACATTAACACTATTGAAAGGATGTAATACTTAAGGTTAAGTGAACAATATATATTACAATTAATTACTTGAATAAGTAAAACACAAGGAAAACATTTACTCACATTATTGTAAGCCAGAGATAACGACTGTAAAGATGGCATCCAACATAATATTATCCTAATACTTTTCC] [+] EMBL CD062241 [TCGCTACTCGAGGTATATTATGGAATGACTTTCTTCGTTGCGAAATCTTATGTTGGCGGTCAGATCATTGGTTGAAATTACATAAGCAAGTGAACTTTTGAAACTACACTGATAAATAAGTTAATATGAAATTACAGGGTTTTGGGAACAATATAGAAATCAGAAGTGTGCGACCATACAAAAATGAAATATTGTGTGAAGGTGAATCTTAGGAATTCCTGAAAGTTGAATGATGATGGGCATAACAAAAAGTTATTAGAATTGAAATAATGTAGAAATTAAAACTCTTAAGTCATTCTAGAAGCTATCTTTAAAACAGACTAAAAAAAATCTTGCTAAGTTGAGTAATCTGTCTAAATACACATTAACACTATTGAAAGGATGTAATACTTAAGGTTAAGTGAACAATATATATTACAATTAATTACTTGAATAAGTAAAACACAAGGAAAACATTTACTCACATTATTGTAAGCCAGAGATAACGACTGTAAAGATGGCATCCAACATAATATTATCCTAATACTTTTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5406#0 CCTGAATACTCATCACTTTGGCCATCATCTGGAGGCTGTCTCGACCAGTTTTTATCCAGT 60 consensus_5406#1 ------------------------------------------------------------ consensus_5406#0 TTATGCGATCTGGAAATGAGCAATTGTTTGTTGTCAAAGTGGACAGAAATTGCCGAGATT 120 consensus_5406#1 ------------------------------------------------------------ consensus_5406#0 TGTATTCAAGTTCCGTGGTTAAAATCCTTGAATGTCAGTAACAACCGCATTCGTCTACCT 180 consensus_5406#1 ------------------------------------------------------------ consensus_5406#0 GTTTCTCCAAAAGAAGTACATGATAAACAAAAAGAAAATGAATGTCTGGAATCTAAACTT 240 consensus_5406#1 ---------------------------------------------TCGCTACTCGAGGTA 15 * * * * consensus_5406#0 TTATATGACATATACTCAGACCCTGTCTTGAGTGAACGGTTGTGTTCGAACGCTTTTCCC 300 consensus_5406#1 TATTATGGAAT-------GACTTTCTTCGTTGCGAAATCTTATGTTGGCGGTCAGATCAT 68 * **** ** *** * * * *** ** **** * * ** consensus_5406#0 CAGTTGTCGCAGCTTACTTTAGTCAAATGCCCACTCCTAAATTGGAAAAGTATTAGGATA 360 consensus_5406#1 TGGTTGAAATTACATAAGCAAGTGAACTTTTGAAACTACACTGATAAATAAGTTAATATG 128 **** * ** *** ** * * * * * *** *** ** consensus_5406#0 ATATTATGTTGGATGCCATCTTTACAGTCGTTATCTCTGGCTTACAATAATTTGGGCAAT 420 consensus_5406#1 AAATTACA--GGGTTTTGGGAACAATATAGAAATCAGAAGTGTGCGACCAT----ACAAA 182 * **** ** * * * * *** * * * * ** *** consensus_5406#0 CCTCCAATTGACTGGGAAAAAAATGCTATTGATGCTTTCCAAAAGTTGACTGACTTAGAC 480 consensus_5406#1 AATGAAAT--ATTGTGTGAAGGTGAATCTTAGGAATTCCTGAAAGTTGAATGAT---GAT 237 * *** * ** * ** * ** ** * ******** *** ** consensus_5406#0 TTAACTCACATAAATCTAACGGCCGCTCATCAGTTATTCGCTCTTATTGGAGCCTCCAAA 540 consensus_5406#1 GGGCATAACAAAAAGTTATTAGAATTGAAATAAT-----GTAGAAATTAAAACTCTTAAG 292 * *** *** ** * * * * * *** * * ** consensus_5406#0 TATCTAAACAACCTACTATTAAATTATAACGAAATAGCGGACATTCCAAATCTAAATAAT 600 consensus_5406#1 TCATTCTAGAAGCTATCTTTAAAACAGACTAAAAAAA---ATCTTGCTAAGTTGAGTAAT 349 * * * ** *** ***** * * *** * * ** * ** * * **** consensus_5406#0 CATTTGTTTCGAAACCTCAACACTCTTGGGTTAAAGAACAACTTATTCACANATTGGGAA 660 consensus_5406#1 C-TGTCTAAATACACATTAACACTATTG----AAAGGATGTAATACTTA-AGGTTAAGTG 403 * * * * * ** * ****** *** **** * ** * * * ** * consensus_5406#0 TTCGTTAATCAGTTACTGAATTTATCCAAATTGGATCATGTAATGGTATCAGGATGCCCA 720 consensus_5406#1 AACAATA-TATATTAC--AATTAATT---ACTTGAATAAGTAA-AACACAAGGAAAAC-A 455 * ** * **** **** ** * * ** * **** * **** * * consensus_5406#0 GTTTTCGAGAACTCTGTCAAT-ATAGAAACCGCTCGTCAGGAAGTCATTGCCCGTTTGCC 779 consensus_5406#1 TTTACTCACATTATTGTAAGCCAGAGATAACGACTGTAAAGATGGCATCCAACATA-ATA 514 ** * * *** * * *** * ** ** * ** * *** * * consensus_5406#0 AAATCTTAAAATGTTAGATCGTGTCGAGATCACTC 814 consensus_5406#1 TTATCCTAATACTTTTCC----------------- 532 *** *** * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||