cluster # 5415

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Schistosoma mansoni
cluster # 5415 cluster # 5415 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5415#0 length = 465 sequences # 2

consensus_5415#1 length = 206 sequences # 1

consensusID : consensus_5415#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 465
fasta sequence

                              [CATATGTACCCACATCATTAATGAAAACCAAGTCTAGATGAGCATTCAAACGAGTAGGAAAATCTACTACATTTAGGTGACCTAGTGATGTAAGGAAGCTACAGTCACATGAATTGAAATCACCACATACAATTGAAAGTGAATCACTGAAGGCAGTAACGGCGAATTCAGTAAATTTATCAGTGAAGACAGATAGCGCAGATGATGTGCAGTCTGGAGTCATGTAGATATTGGTAACATAAATATATTTGTATTTATTCAGGTGTTTTGGACGGCACCTTAAAGTTAGACAGTCAATAAAGTCGTTTGAAAACTTGAAACAGGCAAAAGTAGATCGACACCAGTTAACGTTTACAAAAGTAGCCACTCCGCCACCACAAGTCTTTTTATTGTTTGATCGATCCTGACGATAGATATTAAAATCACGTAATGACACTAAGCAATCATCCTGTAAGTCAGTTAACC]

[+] EMBL CD154162             [CATATGTACCCACATCATTAATGAAAACCAAGTCTAGATGAGCATTCAAACGAGTAGGAAAATCTACTACATTTAGGTGACCTAGTGATGTAAGGAAGCTACAGTCACATGAATTGAAATCACCACATACAATTGAAAGTGAATCACTGAAGGCAGTAACGGCGAATTCAGTAAATTTATCAGTGAAGACAGATAGCGCAGATGATGTGCAGTCTGGAGTCATGTAGATATTGGTAACATAAATATATTTGTATTTATTCAGGTGTTTTGGACGGCACCTTAAAGTTAGACAGTCAATAAAGTCGTTTGAAAACTTGAAACAGGCAAAAGTAGATCGACACCAGTTAACGTTTACAAAAGTAGCCACTCCGCCACCACAAGTCTTTTTATTGTTTGATCGATCCTGACGATAGATATTAAAATCACGTAATGACACTAAGCAATCATCCTGTAAGTCAGTTAACC]
[+] EMBL CD191691             [CATATGTACCCACATCATTAATGAAAACCAAGTCTAGATGAGCATTCAAACGAGTAGGAAAATCTACTACATTTAGGTGACCTAGTGATGTAAGGAAGCCACAGTCACATGAATTGAAATCACCACATACAATTGAAAGTGAATCACTGAAGGCAGTTACGGCGAATTCAGTAAACTTATCAGTGAAGACAGATAGCGCAGATGATGTGCAGTCTGGAGTCATGTAGATATTGGTAACATAAATATATTTGTATTTATTCAGGTGTTTTGGACGGCACCTTAAAGTTAGACAGTCAATAAAGTCGTTTGAAAACTTGAAACAGGCAAAAGTAGATCGACACCAGTTAACGTTTACAAAAGTAGCTACTCCGCCACCACAAGTCTTTTTATTGT                                                                        ]




>consensus_5415#0
CATATGTACCCACATCATTAATGAAAACCAAGTCTAGATGAGCATTCAAACGAGTAGGAA
AATCTACTACATTTAGGTGACCTAGTGATGTAAGGAAGCTACAGTCACATGAATTGAAAT
CACCACATACAATTGAAAGTGAATCACTGAAGGCAGTAACGGCGAATTCAGTAAATTTAT
CAGTGAAGACAGATAGCGCAGATGATGTGCAGTCTGGAGTCATGTAGATATTGGTAACAT
AAATATATTTGTATTTATTCAGGTGTTTTGGACGGCACCTTAAAGTTAGACAGTCAATAA
AGTCGTTTGAAAACTTGAAACAGGCAAAAGTAGATCGACACCAGTTAACGTTTACAAAAG
TAGCCACTCCGCCACCACAAGTCTTTTTATTGTTTGATCGATCCTGACGATAGATATTAA
AATCACGTAATGACACTAAGCAATCATCCTGTAAGTCAGTTAACC

consensusID : consensus_5415#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence

                              [AACAATTGAGCGCATTTACGAGTCACATATGTAGACACATCATTAATGAAAACGAAGTCTAGATGAGCATCCAAAGGAGTCGGAAAATCTACTACGTTTTGGTGACCTAGTGATGTAGGGAAGCTACAATCACATGAATTGAAATCACCACATACAATTGAAAGTGAACCGCTGGAGGCAGTAACAGCGAATTCAGTAAATTCCTT]

[+] EMBL CD085347             [AACAATTGAGCGCATTTACGAGTCACATATGTAGACACATCATTAATGAAAACGAAGTCTAGATGAGCATCCAAAGGAGTCGGAAAATCTACTACGTTTTGGTGACCTAGTGATGTAGGGAAGCTACAATCACATGAATTGAAATCACCACATACAATTGAAAGTGAACCGCTGGAGGCAGTAACAGCGAATTCAGTAAATTCCTT]




>consensus_5415#1
AACAATTGAGCGCATTTACGAGTCACATATGTAGACACATCATTAATGAAAACGAAGTCT
AGATGAGCATCCAAAGGAGTCGGAAAATCTACTACGTTTTGGTGACCTAGTGATGTAGGG
AAGCTACAATCACATGAATTGAAATCACCACATACAATTGAAAGTGAACCGCTGGAGGCA
GTAACAGCGAATTCAGTAAATTCCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5415#0      -------------------------CATATGTACCCACATCATTAATGAAAACCAAGTCT 35
consensus_5415#1      AACAATTGAGCGCATTTACGAGTCACATATGTAGACACATCATTAATGAAAACGAAGTCT 60
                                               ********  ****************** ******

consensus_5415#0      AGATGAGCATTCAAACGAGTAGGAAAATCTACTACATTTAGGTGACCTAGTGATGTAAGG 95
consensus_5415#1      AGATGAGCATCCAAAGGAGTCGGAAAATCTACTACGTTTTGGTGACCTAGTGATGTAGGG 120
                      ********** **** **** ************** *** ***************** **

consensus_5415#0      AAGCTACAGTCACATGAATTGAAATCACCACATACAATTGAAAGTGAATCACTGAAGGCA 155
consensus_5415#1      AAGCTACAATCACATGAATTGAAATCACCACATACAATTGAAAGTGAACCGCTGGAGGCA 180
                      ******** *************************************** * *** *****

consensus_5415#0      GTAACGGCGAATTCAGTAAATTTATCAGTGAAGACAGATAGCGCAGATGATGTGCAGTCT 215
consensus_5415#1      GTAACAGCGAATTCAGTAAATTCCTT---------------------------------- 206
                      ***** ****************  *                                   

consensus_5415#0      GGAGTCATGTAGATATTGGTAACATAAATATATTTGTATTTATTCAGGTGTTTTGGACGG 275
consensus_5415#1      ------------------------------------------------------------
                                                                                  

consensus_5415#0      CACCTTAAAGTTAGACAGTCAATAAAGTCGTTTGAAAACTTGAAACAGGCAAAAGTAGAT 335
consensus_5415#1      ------------------------------------------------------------
                                                                                  

consensus_5415#0      CGACACCAGTTAACGTTTACAAAAGTAGCCACTCCGCCACCACAAGTCTTTTTATTGTTT 395
consensus_5415#1      ------------------------------------------------------------
                                                                                  

consensus_5415#0      GATCGATCCTGACGATAGATATTAAAATCACGTAATGACACTAAGCAATCATCCTGTAAG 455
consensus_5415#1      ------------------------------------------------------------
                                                                                  

consensus_5415#0      TCAGTTAACC 465
consensus_5415#1      ----------