These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5418#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 547 fasta sequence [TGATTCTAC---ACTAGATCTTCTATCTTCAGACTGTTGTTCCGACAATTCTTGACTGGCTGTCAATATTTCAGTTTGTTGTGCTATAATTTCGCGTAATACTTCAGTATAGGATTTTCTTGCGGTATGTATTCCTCGATAGCTTTGACGACGTCGTTTTGCATCTCGCATCATAGATAAAACTTCTAATTTGGATACATCTTGTGATGAATTATTTGATGACCGATGAGATTTATCTGTGGAAAATGCCTGCATATTCATAATCCAAGATGGATCATTTGTCCAATCAGATGTAGGTTGAGTACATTCAGCCGTACATATACTAGCATCGGGTATCATGGCGTCAATCTCTTCCTTGGCGAAACCTTGTTGACGTAATGAACAATAATGATTGTGTGTTGTGAGAGACTTTACAGGAACCCAATGATTCTGTGAATAGGAGCATCTTCCATATTCAACTGGATACGAAAGAAACTCATGAGTCCATCCGAAATCTGAGATAAGTTCATTTAGTAATTTTCGCGACTCGTCAACCAGCATATTCAAAATA] [+] EMBL CD178434 [TGATTCTAC ACTAGATCTTCTATCTTCAGACTGTTGTTCCGACAATTCTTGACTGGCTGTCAATATTTCAGTTTGTTGTGCTATAATTTCGCGTAATACTTCAGTATAGGATTTTCTTGCGGTATGTATTCCTCGATAGCTTTGACGACGTCGTTTTGCATCTCGCATCATAGATAAAACTTCTAATTTGGATACATCTTGTGATGAATTATTTGATGACCGATGAGATTTATCTGTGGAAAATGCCTGCATATTCATAATCCAAGATGGATCATTTGTCCAATCAGATGTAGGTTGAGTACATTCAGCCGTACATATACTAGCATCGGGTATCATGGCGTCAATCTCTTCCTTGGCGAAACCTTGTTGACGTAATGAACAATAATGATTGTGTGTTGTGAGAGACTTTACAGGAACCCAATGATTCTGTGAATAGGAGCATCTTCCATATTCAACTGGATACGAAAGAAACTCATGAGTCCATCCGAAATCTGAGATAAGTTCATTTAGTAATTTTCGCGACTCGTCAACCAGCATATTCAAAATA] [-] EMBL CD178451 [ GATTCTACACTACTAGATCTTCTATCTTCAGACTGTTGTTCCGACAATTCTTGACTGGCTGTCAATATTTCAGTTTGTTGTGCTATAATTTCGCGTAATACTTCAGTATAAGATTTTCTTGCGGTATGTATTCCTCGATAGCTTTGACGACGTCGTTTTGCATCTCGCATCATAGATAAAACTTCTAATTTGGATACATCTTGTGATGAATTATTTGATGACCGATGAGATTTATCCGTGGAAAATGCCTGCATATTCATAATCCAAGATGGATCATTTGTCCAATCAGATGTAGGTTGAGTACATTCAGCCGTACATATACTAGCATCGGGTATCATGGCGTCAATCTCTTCCTTGGCGAAACCTTGTTGACGTAATGAACAATAATGATTGTGTGTTGTGAGAGACTTTACAGGAACCCAATGATTCTGTGA ] consensusID : consensus_5418#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence [TTCACACAAATACAAAACACAGAATCCTTCACGAATACACCGCTATTCTCCTTCCAATTCTCCATCATCATCATCATCATCATCATCATCATCAACAACAACAACTCGACGAAACAATGAAACTTGTAGAAAAACATCCAAATCAACTTTAAAGCATACACATCATCATTCATCGAAATGGAATGATAAAAGACAATCATCACCATCATCATCATCTAAACATCGAACTTCTAGTAAAGAGATGAACNAAACGTCTCATCATGATAGTG] [+] EMBL CD077446 [TTCACACAAATACAAAACACAGAATCCTTCACGAATACACCGCTATTCTCCTTCCAATTCTCCATCATCATCATCATCATCATCATCATCATCAACAACAACAACTCGACGAAACAATGAAACTTGTAGAAAAACATCCAAATCAACTTTAAAGCATACACATCATCATTCATCGAAATGGAATGATAAAAGACAATCATCACCATCATCATCATCTAAACATCGAACTTCTAGTAAAGAGATGAACNAAACGTCTCATCATGATAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5418#0 TGATTCTACACTAGATCTTCTATCTTCAGACTGTTGTTCCGACAATTCTTGACTGGCTGT 60 consensus_5418#1 ------------------------------------------------------------ consensus_5418#0 CAATATTTCAGTTTGTTGTGCTATAATTTCGCGTAATACTTCAGTATAGGATTTTCTTGC 120 consensus_5418#1 ---------------------------TTCACACAAATACAAAACACAGAATCCT-TCAC 32 *** * ** * * ** ** * * * consensus_5418#0 GGTATGTATTCCTCGATAGCTTTGACGACGTCGTTTTGCATCTCGCATCATAGATAAAAC 180 consensus_5418#1 GA---ATACACCGCTATTCTCCTTCCAA-----TTCTCCATCAT-CATCATCATCATCAT 83 * ** ** * ** * * * ** * **** ****** * * consensus_5418#0 TTCTAATTTGGATACATCTTGTGATGAATTATTTGATGAC-CGATGAGATTTATCTGTGG 239 consensus_5418#1 CATCATCATCAACA----------ACAACAACTCGACGAAACAATGAAACTTGTA---GA 130 * * * * ** * * ** ** * **** * ** * * consensus_5418#0 AAAATGCCTGCATATTCATAATCCAAGATGGATCATTTGTCCAATCAGATGTAGGTTGAG 299 consensus_5418#1 AAAACATCCAAATCAACTTTAAAGCATACACATCATC-ATTCATCGAAATG--GAATGAT 187 **** * ** * * * * * ***** * ** * *** * *** consensus_5418#0 TACATTCAGCCGTACATATACTAGCATCGGGTATCATGGCGTCAATCTCTTCCTTGGCGA 359 consensus_5418#1 AAAAGACAATCAT-----CACCATCATCAT-CATCTAAACATCGAACTTC----TAGTAA 237 * * ** * * ** * **** *** * ** * ** * * * consensus_5418#0 AACCTTGTTGACGTAATGAACAATAATGATTGTGTGTTGTGAGAGACTTTACAGGAACCC 419 consensus_5418#1 AGAGATG--AACNAAACGTCTCATCATGATAGTG-------------------------- 269 * ** ** ** * ** ***** *** consensus_5418#0 AATGATTCTGTGAATAGGAGCATCTTCCATATTCAACTGGATACGAAAGAAACTCATGAG 479 consensus_5418#1 ------------------------------------------------------------ consensus_5418#0 TCCATCCGAAATCTGAGATAAGTTCATTTAGTAATTTTCGCGACTCGTCAACCAGCATAT 539 consensus_5418#1 ------------------------------------------------------------ consensus_5418#0 TCAAAATA 547 consensus_5418#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||