cluster # 5418

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Schistosoma mansoni
cluster # 5418 cluster # 5418 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5418#0 length = 547 sequences # 2

consensus_5418#1 length = 269 sequences # 1

consensusID : consensus_5418#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 547
fasta sequence

                              [TGATTCTAC---ACTAGATCTTCTATCTTCAGACTGTTGTTCCGACAATTCTTGACTGGCTGTCAATATTTCAGTTTGTTGTGCTATAATTTCGCGTAATACTTCAGTATAGGATTTTCTTGCGGTATGTATTCCTCGATAGCTTTGACGACGTCGTTTTGCATCTCGCATCATAGATAAAACTTCTAATTTGGATACATCTTGTGATGAATTATTTGATGACCGATGAGATTTATCTGTGGAAAATGCCTGCATATTCATAATCCAAGATGGATCATTTGTCCAATCAGATGTAGGTTGAGTACATTCAGCCGTACATATACTAGCATCGGGTATCATGGCGTCAATCTCTTCCTTGGCGAAACCTTGTTGACGTAATGAACAATAATGATTGTGTGTTGTGAGAGACTTTACAGGAACCCAATGATTCTGTGAATAGGAGCATCTTCCATATTCAACTGGATACGAAAGAAACTCATGAGTCCATCCGAAATCTGAGATAAGTTCATTTAGTAATTTTCGCGACTCGTCAACCAGCATATTCAAAATA]

[+] EMBL CD178434             [TGATTCTAC   ACTAGATCTTCTATCTTCAGACTGTTGTTCCGACAATTCTTGACTGGCTGTCAATATTTCAGTTTGTTGTGCTATAATTTCGCGTAATACTTCAGTATAGGATTTTCTTGCGGTATGTATTCCTCGATAGCTTTGACGACGTCGTTTTGCATCTCGCATCATAGATAAAACTTCTAATTTGGATACATCTTGTGATGAATTATTTGATGACCGATGAGATTTATCTGTGGAAAATGCCTGCATATTCATAATCCAAGATGGATCATTTGTCCAATCAGATGTAGGTTGAGTACATTCAGCCGTACATATACTAGCATCGGGTATCATGGCGTCAATCTCTTCCTTGGCGAAACCTTGTTGACGTAATGAACAATAATGATTGTGTGTTGTGAGAGACTTTACAGGAACCCAATGATTCTGTGAATAGGAGCATCTTCCATATTCAACTGGATACGAAAGAAACTCATGAGTCCATCCGAAATCTGAGATAAGTTCATTTAGTAATTTTCGCGACTCGTCAACCAGCATATTCAAAATA]
[-] EMBL CD178451             [ GATTCTACACTACTAGATCTTCTATCTTCAGACTGTTGTTCCGACAATTCTTGACTGGCTGTCAATATTTCAGTTTGTTGTGCTATAATTTCGCGTAATACTTCAGTATAAGATTTTCTTGCGGTATGTATTCCTCGATAGCTTTGACGACGTCGTTTTGCATCTCGCATCATAGATAAAACTTCTAATTTGGATACATCTTGTGATGAATTATTTGATGACCGATGAGATTTATCCGTGGAAAATGCCTGCATATTCATAATCCAAGATGGATCATTTGTCCAATCAGATGTAGGTTGAGTACATTCAGCCGTACATATACTAGCATCGGGTATCATGGCGTCAATCTCTTCCTTGGCGAAACCTTGTTGACGTAATGAACAATAATGATTGTGTGTTGTGAGAGACTTTACAGGAACCCAATGATTCTGTGA                                                                                                                   ]




>consensus_5418#0
TGATTCTACACTAGATCTTCTATCTTCAGACTGTTGTTCCGACAATTCTTGACTGGCTGT
CAATATTTCAGTTTGTTGTGCTATAATTTCGCGTAATACTTCAGTATAGGATTTTCTTGC
GGTATGTATTCCTCGATAGCTTTGACGACGTCGTTTTGCATCTCGCATCATAGATAAAAC
TTCTAATTTGGATACATCTTGTGATGAATTATTTGATGACCGATGAGATTTATCTGTGGA
AAATGCCTGCATATTCATAATCCAAGATGGATCATTTGTCCAATCAGATGTAGGTTGAGT
ACATTCAGCCGTACATATACTAGCATCGGGTATCATGGCGTCAATCTCTTCCTTGGCGAA
ACCTTGTTGACGTAATGAACAATAATGATTGTGTGTTGTGAGAGACTTTACAGGAACCCA
ATGATTCTGTGAATAGGAGCATCTTCCATATTCAACTGGATACGAAAGAAACTCATGAGT
CCATCCGAAATCTGAGATAAGTTCATTTAGTAATTTTCGCGACTCGTCAACCAGCATATT
CAAAATA

consensusID : consensus_5418#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 269
fasta sequence

                              [TTCACACAAATACAAAACACAGAATCCTTCACGAATACACCGCTATTCTCCTTCCAATTCTCCATCATCATCATCATCATCATCATCATCATCAACAACAACAACTCGACGAAACAATGAAACTTGTAGAAAAACATCCAAATCAACTTTAAAGCATACACATCATCATTCATCGAAATGGAATGATAAAAGACAATCATCACCATCATCATCATCTAAACATCGAACTTCTAGTAAAGAGATGAACNAAACGTCTCATCATGATAGTG]

[+] EMBL CD077446             [TTCACACAAATACAAAACACAGAATCCTTCACGAATACACCGCTATTCTCCTTCCAATTCTCCATCATCATCATCATCATCATCATCATCATCAACAACAACAACTCGACGAAACAATGAAACTTGTAGAAAAACATCCAAATCAACTTTAAAGCATACACATCATCATTCATCGAAATGGAATGATAAAAGACAATCATCACCATCATCATCATCTAAACATCGAACTTCTAGTAAAGAGATGAACNAAACGTCTCATCATGATAGTG]




>consensus_5418#1
TTCACACAAATACAAAACACAGAATCCTTCACGAATACACCGCTATTCTCCTTCCAATTC
TCCATCATCATCATCATCATCATCATCATCATCAACAACAACAACTCGACGAAACAATGA
AACTTGTAGAAAAACATCCAAATCAACTTTAAAGCATACACATCATCATTCATCGAAATG
GAATGATAAAAGACAATCATCACCATCATCATCATCTAAACATCGAACTTCTAGTAAAGA
GATGAACNAAACGTCTCATCATGATAGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5418#0      TGATTCTACACTAGATCTTCTATCTTCAGACTGTTGTTCCGACAATTCTTGACTGGCTGT 60
consensus_5418#1      ------------------------------------------------------------
                                                                                  

consensus_5418#0      CAATATTTCAGTTTGTTGTGCTATAATTTCGCGTAATACTTCAGTATAGGATTTTCTTGC 120
consensus_5418#1      ---------------------------TTCACACAAATACAAAACACAGAATCCT-TCAC 32
                                                 *** *  **      *  * ** **  * *  *

consensus_5418#0      GGTATGTATTCCTCGATAGCTTTGACGACGTCGTTTTGCATCTCGCATCATAGATAAAAC 180
consensus_5418#1      GA---ATACACCGCTATTCTCCTTCCAA-----TTCTCCATCAT-CATCATCATCATCAT 83
                      *     **  ** * **     *  * *     ** * ****   ******    *  * 

consensus_5418#0      TTCTAATTTGGATACATCTTGTGATGAATTATTTGATGAC-CGATGAGATTTATCTGTGG 239
consensus_5418#1      CATCATCATCAACA----------ACAACAACTCGACGAAACAATGAAACTTGTA---GA 130
                          *   *  * *            **  * * ** **  * **** * ** *    * 

consensus_5418#0      AAAATGCCTGCATATTCATAATCCAAGATGGATCATTTGTCCAATCAGATGTAGGTTGAG 299
consensus_5418#1      AAAACATCCAAATCAACTTTAAAGCATACACATCATC-ATTCATCGAAATG--GAATGAT 187
                      ****   *   **   * * *    * *   *****   * **   * ***  *  *** 

consensus_5418#0      TACATTCAGCCGTACATATACTAGCATCGGGTATCATGGCGTCAATCTCTTCCTTGGCGA 359
consensus_5418#1      AAAAGACAATCAT-----CACCATCATCAT-CATCTAAACATCGAACTTC----TAGTAA 237
                       * *  **  * *      ** * ****    ***    * ** * **      * *  *

consensus_5418#0      AACCTTGTTGACGTAATGAACAATAATGATTGTGTGTTGTGAGAGACTTTACAGGAACCC 419
consensus_5418#1      AGAGATG--AACNAAACGTCTCATCATGATAGTG-------------------------- 269
                      *    **   **  ** *    ** ***** ***                          

consensus_5418#0      AATGATTCTGTGAATAGGAGCATCTTCCATATTCAACTGGATACGAAAGAAACTCATGAG 479
consensus_5418#1      ------------------------------------------------------------
                                                                                  

consensus_5418#0      TCCATCCGAAATCTGAGATAAGTTCATTTAGTAATTTTCGCGACTCGTCAACCAGCATAT 539
consensus_5418#1      ------------------------------------------------------------
                                                                                  

consensus_5418#0      TCAAAATA 547
consensus_5418#1      --------