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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5420#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence
[GTACTTAACTGTAACGAAGAACGTTAAACTTAACTTTCTAATAGTTTTTGAGCACTGTGTGCTGATTTAAACTAAGTAAACGACCAAAGTGTTTAAAACTTAATTATTCATATCAAGGAGTTGGAGCAAATGATAATTAACTTGGGTTACTAACATTCACCATGAACTTTCCTCCAAAATGGTACAATCGCTTAAACTATTCTTAAGAAATATAGCCAATAAACTATTAGCGAATAAAAACAACTAATATTTGCATTAATCTAGATACCAAATGCTGAAAAATATCGTTAATCTTGGTTTTCACCTGTTCATATTTAAAGAAAACAATTTTAAATCTGCAGCCCTCAAAATGTTGAAATTAATGTTAAAAAGTTAAAAGCTGAAGGGTCCAGGTGGCTGGTCTAACAATATGTCAATCAAAAAAATTCACTGAACTTTACTTGCACACTGATCAAAACATCTTATCAATTCCAGAGGATAAACGACTTCGCAGCAAGAAGCACAAGCTNTATTTGTGTTCATCATGAATAAGGACACTGTCA]
[+] EMBL CD194318 [GTACTTAACTGTAACGAAGAACGTTAAACTTAACTTTCTAATAGTTTTTGAGCACTGTGTGCTGATTTAAACTAAGTAAACGACCAAAGTGTTTAAAACTTAATTATTCATATCAAGGAGTTGGAGCAAATGATAATTAACTTGGGTTACTAACATTCACCATGAACTTTCCTCCAAAATGGTACAATCGCTTAAACTATTCTTAAGAAATATAGCCAATAAACTATTAGCGAATAAAAACAACTAATATTTGCATTAATCTAGATACCAAATGCTGAAAAATATCGTTAATCTTGGTTTTCACCTGTTCATATTTAAAGAAAACAATTTTAAATCTGCAGCCCTCAAAATGTTGAAATTAATGTTAAAAAGTTAAAAGCTGAAGGGTCCAGGTGGCTGGTCTAACAATATGTCAATCAAAAAAATTCACTGAACTTTACTTGCACACTGATCAAAACATCTTATCAATTCCAGAGGATAAACGACTTCGCAGCAAGAAGCACAAGCTNTATTTGTGTTCATCATGAATAAGGACACTGTCA]
consensusID : consensus_5420#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence
[AATTGAGCACATAAAAACGCGCACTCGTAGTTTCGAAATACTGAAAATCACTATTTTCAATAAATAAAGTCTCGATTGAAACATATTTGACAGTGTCCTTATTCATGATGAACACAAATAAAGCTTGTGCTTCTTGCTGCGAAGTCGTTTATCCTCTGGAATTGATAAGATGTTTTGATCAGGTATGGCATAGAAGATGTTTCCGTTGTCAGCACTGTGGGATGGCCTTGAGCATATGTAACTACCATGGTGGGTATGATAAGAAGCCATATTGTGCAGCACACACTCCAAAGCCGACCTCATTTACATTCATTCCGGATACACCAGAACTGTTGAGAGTAGCTAATAATACAAGAATGTTTAGCAGTATAAGATACAGTGCAGATGCTCAACGTATTAGAAGCAAAATTACATCATTTCCAGATGACTTGTGGACTCAACATACACTGAGACTATCGAAA]
[+] EMBL CD187421 [AATTGAGCACATAAAAACGCGCACTCGTAGTTTCGAAATACTGAAAATCACTATTTTCAATAAATAAAGTCTCGATTGAAACATATTTGACAGTGTCCTTATTCATGATGAACACAAATAAAGCTTGTGCTTCTTGCTGCGAAGTCGTTTATCCTCTGGAATTGATAAGATGTTTTGATCAGGTATGGCATAGAAGATGTTTCCGTTGTCAGCACTGTGGGATGGCCTTGAGCATATGTAACTACCATGGTGGGTATGATAAGAAGCCATATTGTGCAGCACACACTCCAAAGCCGACCTCATTTACATTCATTCCGGATACACCAGAACTGTTGAGAGTAGCTAATAATACAAGAATGTTTAGCAGTATAAGATACAGTGCAGATGCTCAACGTATTAGAAGCAAAATTACATCATTTCCAGATGACTTGTGGACTCAACATACACTGAGACTATCGAAA]
consensusID : consensus_5420#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 340 fasta sequence
[GGTGACATCCACCACTATTCGATAATGATCTAGAATTTATGCCTGACGAATTTGAAAAAGTATGCGGTGAAGTGCAGTGATTGCTTAATCCAAATCGAGTAGGTGGTGGTGTATAACTATTGTAGTATGAAGCACCACGTCTATATGATTGTGGTGAAGAGCGTTCATCAAATCCAGAGCTTCGTCCCGAACGAACACTGTTTGCACTGCTAAACATTCTTGTATTATTAGCTACTCTCAACAGTTCTGGTGTATCCGGAATGAATGTAAATGAGGTCGGCTTTGGAGTGTGTGCTGCACAATATGGCTTCTTACCATACCCACCATGGTAGTTACATAT]
[+] EMBL CD182193 [GGTGACATCCACCACTATTCGATAATGATCTAGAATTTATGCCTGACGAATTTGAAAAAGTATGCGGTGAAGTGCAGTGATTGCTTAATCCAAATCGAGTAGGTGGTGGTGTATAACTATTGTAGTATGAAGCACCACGTCTATATGATTGTGGTGAAGAGCGTTCATCAAATCCAGAGCTTCGTCCCGAACGAACACTGTTTGCACTGCTAAACATTCTTGTATTATTAGCTACTCTCAACAGTTCTGGTGTATCCGGAATGAATGTAAATGAGGTCGGCTTTGGAGTGTGTGCTGCACAATATGGCTTCTTACCATACCCACCATGGTAGTTACATAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5420#0 GTACTTAACTGTAACGAAGAACGTTAAACTTAACTTTCTAATAGTTTTTGAGCACTGTGT 60
consensus_5420#1 ------------AATTGAGCACATAAAAAC--GCGCACTCGTAGTTTCGAAATACTGAAA 46
consensus_5420#2 ------------------------------------------------------------
consensus_5420#0 GCTG--ATTTAAACTAAGTAAACGACCAAAGTGTTTAAAACTTAATTATTCATATCAAGG 118
consensus_5420#1 ATCACTATTTTCAATAAATAAAGTCTCGA-----TTGAAACATATTTGACAGTGTCCTT- 100
consensus_5420#2 -----------------------------------------------GGTGACATCCACC 13
**
consensus_5420#0 AGTTGGAGCAAATGATAATTAA-CTTGGGTTACTAACATTCACCATGAACTTTCCTCCAA 177
consensus_5420#1 ATTCATGATGAACACAAATAAAGCTTGTGCTTCTTGC-TGCGAAGTCGTTTATCCTCTGG 159
consensus_5420#2 ACTATTCGATAATGATC-TAGAATTTATGCCTGACGAATTTGAAA--AAGTATGCGGTGA 70
* * ** * * ** * * * * *
consensus_5420#0 AATGGTACAATCGCTTAAACTATTCTTAAGAAATA-TAGCCAATAAACTATTAGCGAATA 236
consensus_5420#1 AATTGA---------TAAGATGTTTTGATCAGGTA-TGGCATAGAAGATGTTTCCG--TT 207
consensus_5420#2 AGTGCAGTGATTGCTTAATCCAAATCGAGTAGGTGGTGGTGTATAA-CTATTGTAG--TA 127
* * *** * * * * * * ** * ** * *
consensus_5420#0 AAAACAACTAATATTTGCATTAATCTAGATACCAAATGCTGAAAAATATCGTTAATCTTG 296
consensus_5420#1 GTCAGCACTG-----TGGGATGGCCTTGAG--CATATG-TAACTACCATGGTGGGTATGA 259
consensus_5420#2 TGAAGCACCA-----------CGTCTATAT----GATTGTGGTGAAGAGCGTTCATCAAA 172
* ** ** * ** * * * ** *
consensus_5420#0 GTTTTCACCTGTTCATATT-TAAAGAAAACAATTTTAAATCTGCAGCCCTCAAAATGTTG 355
consensus_5420#1 -----TAAGAAGCCATATTGTGCAGCACACACTCCAAA----GCCGACCTCA-----TTT 305
consensus_5420#2 -----TCCAGAGCTTCGTC-CCGAACGAACACTGTT-----TGCACTGCTAAACATTCTT 221
* * *** * ** ** * *
consensus_5420#0 AAATTAATGTTAAAAAGTTAAAAGCTGAAGGGTCCAGGTGGCTGGTCTAACAATATGTCA 415
consensus_5420#1 ACATTCATTCCGGATACACCAGAACTGTTGAGAGTAGCTAA-TAATACAAGAATGTTTAG 364
consensus_5420#2 GTATT-ATTAGCTACTCTCAACAGTTCTGGTGTATCCGGAATGAATGTAAATGAGGTCGG 280
*** ** * * * * * * * **
consensus_5420#0 ATCAAAAAAATTCACTGAACTTTACTTGCACACTGATCAAAACATCTTATCAATTCCAGA 475
consensus_5420#1 CAGTATAAGATACAGTGCAGATGCTCAACGTATTAGAAGCAAAATTACATCATTTCCAGA 424
consensus_5420#2 CTTTGGAGTGTGTGCTGCACAATAT-GGCTTCTTACCATACCCACCATGGTAGTTACATA 339
* * ** * * * * * ** ** *
consensus_5420#0 GGATAAACGACTTCGCAGCAAGAAGCACAAGCTNTATTTGTGTTCATCATGAATAAGGAC 535
consensus_5420#1 TGACTTGTGGACTC-----AACATACACTGAGACTATCGAAA------------------ 461
consensus_5420#2 T----------------------------------------------------------- 340
consensus_5420#0 ACTGTCA 542
consensus_5420#1 -------
consensus_5420#2 -------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||