cluster # 5426

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Schistosoma mansoni
cluster # 5426 cluster # 5426 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5426#0 length = 831 sequences # 2

consensus_5426#1 length = 389 sequences # 1

consensusID : consensus_5426#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 831
fasta sequence

                              [TCTTTCGCGCTAAAAATGTTATCGGTGACGAAATACTGAATGGAAAAGCGAAAGATTCCAATTCACGACAACTATGCCTCACTGCCCCGCTTTTCGGTGTACGACTTCGGAAGATTCCTGTCATTCCTGATGACTCAGATGCAATCTCAGAGGAAGTTCGCAACTTTATGAACCGTTACGACTACGTAATAACATCCGGAGGTATAGGTTCTACTCACGATGATGTGACATATGAAGGTGTTGCTAAGGCACTAAATGAAAAAATTATCATTCATCCAAAGTTCCTCCAAACTCTCAGGAGACTATTAAAACCGAACATGATTTCCTCTTCAGATCCCATGACCAAACTTGCCAAAATACCGGAATCATCTGAATTACTATATGCAACAGGAATCCAGATGGGAAGTGAAAGTTCTTATCCTATTGTCAAAGTGAAGAATATCTTCATTTTACCGGGAGTTCCATGCTTGTTTAATATGGCACTAGAGATAATTAAGACTCTCTCAAACCTAAGGAAAAGCCAGATCTACGTATAATATAGGCCGCAGCTTTCACACCTGACTGCAGCGACGTGATCATTGGCTTATTACGTATATAATCTGCAATAAATCCGGCGGCAAAGGAATCTCCAGCTCCATTTGTATCCACCATTTCTTCATCCTTCAACTGCTCTACAACATATTGATGAACGGTAGGGATCATATCCGAGATCCTAATGTGATATTCTTTCATCGTTCCTTATATCTAACCACTATGGAAACTGAAATAGCGAAGGATTTGTCCCGCTTAGCCGAAAATATCAAGGTGTAGTCAGTATTGGATCTTATCCTG]

[+] EMBL CD178320             [TCTTTCGCGCTAAAAATGTTATCGGTGACGAAATACTGAATGGAAAAGCGAAAGATTCCAATTCACGACAACTATGCCTCACTGCCCCGCTTTTCGGTGTACGACTTCGGAAGATTCCTGTCATTCCTGATGACTCAGATGCAATCTCAGAGGAAGTTCGCAACTTTATGAACCGTTACGACTACGTAATAACATCCGGAGGTATAGGTTCTACTCACGATGATGTGACATATGAAGGTGTTGCTAAGGCACTAAATGAAAAAATTATCATTCATCCAAAGTTCCTCCAAACTCTCAGGAGACTATTAAAACCGAACATGATTTCCTCTTCAGATCCCATGACCAAACTTGCCAAAATACCGGAATCATCTGAATTACTATATGCAACAGGAATCCAGATGGGAAGTGAAAGTTCTTATCCTATTGTCAAAGTGAAGAATATCTTCATTTTACCGGGAGTTCCATGCTTGTTTAATATGGCACTAGAGATAATTAAGACTCTCTCAAACCTAAGG                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD083111             [                                                                                                                                                                                                                                                TTGCTAAGGCACTAAATGAAAAAATTATCATTCATCCAAAGTTCCTCCAAACTCTCAGGAGACTATTAAAACCGAACATGATTTCCTCTTCAGATCCCATGACCAAACTTGCCAAAATACCGGAATCATCTGAATTACTATATGCAACAGGAATCCAGATGGGAAGTGAAAGTTCTTATCCTATTGTCAAAGTGAAGAATATCTTCATTTTACCGGGAGTTCCATGCTTGTTTAATATGGCACTAGAGATAATTAAGACTCTCTCAAACCTAAGGAAAAGCCAGATCTACGTATAATATAGGCCGCAGCTTTCACACCTGACTGCAGCGACGTGATCATTGGCTTATTACGTATATAATCTGCAATAAATCCGGCGGCAAAGGAATCTCCAGCTCCATTTGTATCCACCATTTCTTCATCCTTCAACTGCTCTACAACATATTGATGAACGGTAGGGATCATATCCGAGATCCTAATGTGATATTCTTTCATCGTTCCTTATATCTAACCACTATGGAAACTGAAATAGCGAAGGATTTGTCCCGCTTAGCCGAAAATATCAAGGTGTAGTCAGTATTGGATCTTATCCTG]




>consensus_5426#0
TCTTTCGCGCTAAAAATGTTATCGGTGACGAAATACTGAATGGAAAAGCGAAAGATTCCA
ATTCACGACAACTATGCCTCACTGCCCCGCTTTTCGGTGTACGACTTCGGAAGATTCCTG
TCATTCCTGATGACTCAGATGCAATCTCAGAGGAAGTTCGCAACTTTATGAACCGTTACG
ACTACGTAATAACATCCGGAGGTATAGGTTCTACTCACGATGATGTGACATATGAAGGTG
TTGCTAAGGCACTAAATGAAAAAATTATCATTCATCCAAAGTTCCTCCAAACTCTCAGGA
GACTATTAAAACCGAACATGATTTCCTCTTCAGATCCCATGACCAAACTTGCCAAAATAC
CGGAATCATCTGAATTACTATATGCAACAGGAATCCAGATGGGAAGTGAAAGTTCTTATC
CTATTGTCAAAGTGAAGAATATCTTCATTTTACCGGGAGTTCCATGCTTGTTTAATATGG
CACTAGAGATAATTAAGACTCTCTCAAACCTAAGGAAAAGCCAGATCTACGTATAATATA
GGCCGCAGCTTTCACACCTGACTGCAGCGACGTGATCATTGGCTTATTACGTATATAATC
TGCAATAAATCCGGCGGCAAAGGAATCTCCAGCTCCATTTGTATCCACCATTTCTTCATC
CTTCAACTGCTCTACAACATATTGATGAACGGTAGGGATCATATCCGAGATCCTAATGTG
ATATTCTTTCATCGTTCCTTATATCTAACCACTATGGAAACTGAAATAGCGAAGGATTTG
TCCCGCTTAGCCGAAAATATCAAGGTGTAGTCAGTATTGGATCTTATCCTG

consensusID : consensus_5426#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 389
fasta sequence

                              [ATGCTTGTTAATATGGCACTAGAGATAATTAAGACTCTCTCAAACCTAAGAAAAAGCCAGATCTACGTATAATATAGGCCGCAGCTTTCACACCTGACTGCAGCGACGTGATCATTGGCTTATTACGTATATCATCTGCAATAAATCCGGCGGCAAAGGAATCTCCAGCTCCATTTGTATCCACCATTTCTTCATCCTTCAACTGCTCTACAACATATTGATGAACGGTAGGGTCAGTAGAATCTGCATATATTATGGGATCTTTCCCTTGTGTTATAATGACCAATCGTTTACGCTTTTTTCCGTCAGCAAATGGTAAGTCAGCTATATACTGGGCTGCTTCATGAACGGTTCCATCAGTAAGACTATGAAGCTCTCCAAACGTTGCA]

[+] EMBL CD062389             [ATGCTTGTTAATATGGCACTAGAGATAATTAAGACTCTCTCAAACCTAAGAAAAAGCCAGATCTACGTATAATATAGGCCGCAGCTTTCACACCTGACTGCAGCGACGTGATCATTGGCTTATTACGTATATCATCTGCAATAAATCCGGCGGCAAAGGAATCTCCAGCTCCATTTGTATCCACCATTTCTTCATCCTTCAACTGCTCTACAACATATTGATGAACGGTAGGGTCAGTAGAATCTGCATATATTATGGGATCTTTCCCTTGTGTTATAATGACCAATCGTTTACGCTTTTTTCCGTCAGCAAATGGTAAGTCAGCTATATACTGGGCTGCTTCATGAACGGTTCCATCAGTAAGACTATGAAGCTCTCCAAACGTTGCA]




>consensus_5426#1
ATGCTTGTTAATATGGCACTAGAGATAATTAAGACTCTCTCAAACCTAAGAAAAAGCCAG
ATCTACGTATAATATAGGCCGCAGCTTTCACACCTGACTGCAGCGACGTGATCATTGGCT
TATTACGTATATCATCTGCAATAAATCCGGCGGCAAAGGAATCTCCAGCTCCATTTGTAT
CCACCATTTCTTCATCCTTCAACTGCTCTACAACATATTGATGAACGGTAGGGTCAGTAG
AATCTGCATATATTATGGGATCTTTCCCTTGTGTTATAATGACCAATCGTTTACGCTTTT
TTCCGTCAGCAAATGGTAAGTCAGCTATATACTGGGCTGCTTCATGAACGGTTCCATCAG
TAAGACTATGAAGCTCTCCAAACGTTGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5426#0      TCTTTCGCGCTAAAAATGTTATCGGTGACGAAATACTGAATGGAAAAGCGAAAGATTCCA 60
consensus_5426#1      ------------------------------------------------------------
                                                                                  

consensus_5426#0      ATTCACGACAACTATGCCTCACTGCCCCGCTTTTCGGTGTACGACTTCGGAAGATTCCTG 120
consensus_5426#1      ------------------------------------------------------------
                                                                                  

consensus_5426#0      TCATTCCTGATGACTCAGATGCAATCTCAGAGGAAGTTCGCAACTTTATGAACCGTTACG 180
consensus_5426#1      ------------------------------------------------------------
                                                                                  

consensus_5426#0      ACTACGTAATAACATCCGGAGGTATAGGTTCTACTCACGATGATGTGACATATGAAGGTG 240
consensus_5426#1      ------------------------------------------------------------
                                                                                  

consensus_5426#0      TTGCTAAGGCACTAAATGAAAAAATTATCATTCATCCAAAGTTCCTCCAAACTCTCAGGA 300
consensus_5426#1      ------------------------------------------------------------
                                                                                  

consensus_5426#0      GACTATTAAAACCGAACATGATTTCCTCTTCAGATCCCATGACCAAACTTGCCAAAATAC 360
consensus_5426#1      ------------------------------------------------------------
                                                                                  

consensus_5426#0      CGGAATCATCTGAATTACTATATGCAACAGGAATCCAGATGGGAAGTGAAAGTTCTTATC 420
consensus_5426#1      ------------------------------------------------------------
                                                                                  

consensus_5426#0      CTATTGTCAAAGTGAAGAATATCTTCATTTTACCGGGAGTTCCATGCTTGTTTAATATGG 480
consensus_5426#1      -------------------------------------------ATGCTTGTT-AATATGG 16
                                                                 ********* *******

consensus_5426#0      CACTAGAGATAATTAAGACTCTCTCAAACCTAAGGAAAAGCCAGATCTACGTATAATATA 540
consensus_5426#1      CACTAGAGATAATTAAGACTCTCTCAAACCTAAGAAAAAGCCAGATCTACGTATAATATA 76
                      ********************************** *************************

consensus_5426#0      GGCCGCAGCTTTCACACCTGACTGCAGCGACGTGATCATTGGCTTATTACGTATATAATC 600
consensus_5426#1      GGCCGCAGCTTTCACACCTGACTGCAGCGACGTGATCATTGGCTTATTACGTATATCATC 136
                      ******************************************************** ***

consensus_5426#0      TGCAATAAATCCGGCGGCAAAGGAATCTCCAGCTCCATTTGTATCCACCATTTCTTCATC 660
consensus_5426#1      TGCAATAAATCCGGCGGCAAAGGAATCTCCAGCTCCATTTGTATCCACCATTTCTTCATC 196
                      ************************************************************

consensus_5426#0      CTTCAACTGCTCTACAACATATTGATGAACGGTAGGG--ATCATATCCGAGATCCTAATG 718
consensus_5426#1      CTTCAACTGCTCTACAACATATTGATGAACGGTAGGGTCAGTAGAATCTGCATA-TATTA 255
                      *************************************  *  * *  *   **  ** * 

consensus_5426#0      TGATATTCTTTCATCGT-TCCTTATATCTAACCACT-ATGGAAACTGAAAT-AGCGAAGG 775
consensus_5426#1      TGGGATCTTTCCCTTGTGTTATAATGACCAATCGTTTACGCTTTTTTCCGTCAGCAAATG 315
                      **  **  ** * * ** *  * **  * ** *  * * *     *    * *** ** *

consensus_5426#0      ATTTGTC--CCGCTTAGCCGAAAATATCAAG----GTGTAGTCAGTA----TTGGATCTT 825
consensus_5426#1      GTAAGTCAGCTATATACTGGGCTGCTTCATGAACGGTTCCATCAGTAAGACTATGAAGCT 375
                       *  ***  *    **   *      *** *    **    ******    *  **   *

consensus_5426#0      ATCCTG-------- 831
consensus_5426#1      CTCCAAACGTTGCA 389
                       ***