These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5430#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [TTGGCCCTCAGGCAGATCGGCACGAGGGAAATCAGAGAATAGTTTATTAGCTTTGGAACCATTACAGCTCAATTCAAATAATCAACGTCCACGTAATAATAATAATAATAATCGTGAATCATCAAAACCAGTCCATAATTTTTCATGGTCAAGTTTGGATGACCGAGAAATAAATTTATCTGACACTACTGCTCATTCAACTACAGAATTAATTCATTCTTCAAATGAACAGAAATTAGCCTGCTTCAATTTGTCATCACCAACAACAACTGACGAGAATCAACAACCAGAAAGAGTGAATCATACTTTTAACGAGTCGACAAATCGTTCTAATCCTGTAGATTCAGCTACTCCAAGTAGTCCGCACACTCGAAACAGTGATNAACAGTTTACTTCATCATCAGCTGAACCATGTCAAGAAAGGACTATT] [+] EMBL CD084021 [TTGGCCCTCAGGCAGATCGGCACGAGGGAAATCAGAGAATAGTTTATTAGCTTTGGAACCATTACAGCTCAATTCAAATAATCAACGTCCACGTAATAATAATAATAATAATCGTGAATCATCAAAACCAGTCCATAATTTTTCATGGTCAAGTTTGGATGACCGAGAAATAAATTTATCTGACACTACTGCTCATTCAACTACAGAATTAATTCATTCTTCAAATGAACAGAAATTAGCCTGCTTCAATTTGTCATCACCAACAACAACTGACGAGAATCAACAACCAGAAAGAGTGAATCATACTTTTAACGAGTCGACAAATCGTTCTAATCCTGTAGATTCAGCTACTCCAAGTAGTCCGCACACTCGAAACAGTGATNAACAGTTTACTTCATCATCAGCTGAACCATGTCAAGAAAGGACTATT] consensusID : consensus_5430#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 348 fasta sequence [GAAGAATAAAAAAAGATGACCGTATATTAGAAATTAACGGAATTGATTTAGAAAATGGGACACAAGAACAAGCAGCTCAAATAATTAATTCTGTTTCGGATTATGTTATTTTTAAAATAAGCCGTCGAAATCGATCTGATACACCTGATATTTTAAGAACTACAACAGATTCAGAAGAGAAATCAGAGAATAGTTTATTAGCTTTGGAACCATTACAGCTCAATTCAAATAATCAACGTCCACGTAATAATAATAATAATAATCGTGAATCATCANAACCAGTCCATAATTTTTCATGGTCAAGTTTGGATGACCGAGAAATAAATTTATCTGACACTACTGCTCATT] [+] EMBL CD194641 [GAAGAATAAAAAAAGATGACCGTATATTAGAAATTAACGGAATTGATTTAGAAAATGGGACACAAGAACAAGCAGCTCAAATAATTAATTCTGTTTCGGATTATGTTATTTTTAAAATAAGCCGTCGAAATCGATCTGATACACCTGATATTTTAAGAACTACAACAGATTCAGAAGAGAAATCAGAGAATAGTTTATTAGCTTT ] [+] EMBL CD181410 [ AAGAATAAAAAAAGATGACCGTATATTAGAAATTAACGGAATTGATTTAGAAAATGGGACACAAGAACAAGCAGCTCAAATAATTAATTCTGTTTCGGATTATGTTATTTTTAAAATAAGCCGTCGAAATCGATCTGATACACCTGATATTTTAAGAACTACAACAGATTCAGAAGAGAAATCAGAGAATAGTTTATTAGCTTTGGAACCATTACAGCTCAATTCAAATAATCAACGTCCACGTAATAATAATAATAATAATCGTGAATCATCANAACCAGTCCATAATTTTTCATGGTCAAGTTTGGATGACCGAGAAATAAATTTATCTGACACTACTGCTCATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5430#0 TTGGCCCTCAGGCAGATCGGCACGAGGGAAATCAGAGAATAGTTTATTAGCTTTGGAACC 60 consensus_5430#1 -------------------------GAAGAATAAAAAAAGATGACCGTATATTAGAAATT 35 * *** * * ** * ** ** * ** consensus_5430#0 ATTACAGCTCAATTCAAATAATCAACGTCCACGTAATAATAATAATAATAATCGTGAATC 120 consensus_5430#1 AACGGAATT-GATTTAGAAAAT----------GGGACA-CAAGAACAAGCAGCTCAAATA 83 * * * *** * * *** * * * ** ** ** * * *** consensus_5430#0 ATCAAAACCAGTCCATAATTTTTCATGGTCAAGTTTGGATGACCGAGAAATAAATTTATC 180 consensus_5430#1 ATTAATTCTGTTTCGGATTATGTTATTTTTAAAATAAGCCGTCG-------AAATCGATC 136 ** ** * * * * * * * ** * ** * * * * **** *** consensus_5430#0 TGACACTACTGCTCATTCAACTAC-AGAATTAATTCATTCTTCAAATGAACAGAAATTAG 239 consensus_5430#1 TGATACACCTGATATTTTAAGAACTACAACAGATTCAGAAGAGAAAT---CAGAGAATAG 193 *** ** *** * ** ** ** * ** ***** **** **** * *** consensus_5430#0 CCTGCTTCAATTTGTCATCACCAACAACAACTGACGAGAATCAACAACCAGAAAGAGTGA 299 consensus_5430#1 TTTA-TTAGCTTTGGAACCATTACAGCTCAATTCAAATAATCAACGTCCACGTAATAATA 252 * ** **** * ** * * * * ******* *** * * consensus_5430#0 ATCATACTTTTAACGAGTCGACAAATCGTTCTAATCCTGTAGATTCAGCTACTCCAAGTA 359 consensus_5430#1 ATAATAATAATCGTGAATCATCANA----ACCAGTCC-ATAATTTTTCATGGTCAA---- 303 ** *** * * ** ** ** * * * *** ** ** * ** * consensus_5430#0 GTCCGCACACTCGAAACAGTGATNAACAGTTTACTTCATCATCAGCTGAACCATGTCAAG 419 consensus_5430#1 GTTTGGATGACCGAGAAATAAATT--TATCTGACACTACTGCTCATT------------- 348 ** * * *** * * ** * * ** * * consensus_5430#0 AAAGGACTATT 430 consensus_5430#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||