cluster # 5439

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Schistosoma mansoni
cluster # 5439 cluster # 5439 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5439#0 length = 437 sequences # 2

consensus_5439#1 length = 347 sequences # 1

consensusID : consensus_5439#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 437
fasta sequence

                              [TACCCTTGCTTGAGTGCATGGATTCTAATGTATTGGCATCTCGTCCTACCAGAAGATATACAAAATGTGAATGCAGTAACTAAGATGTATGTTGTATACGCATTAACGACAGACAATGTGTCCAATTTAATTAAACTCTTCAAAATCAGTATTAATTACCTTATGTGCGTAGAAAACTCGATCCTATGAAATGGTTCTTTTCTTGGGAGTAAAAAGTTGGCGTTTTTAGGATTTGTGATTAAAATAATAGGCCATTCTTTGTTTGAGTCATTGAGTGAGAATTTCCTCACATCTACAAACGACACTAAATCGTTGTCAACAGCCACAATTCGGAAGTAACGATTATCACGCCAATCACCTAATTCCCATTCCCAATAACCTTGAGGCTGCAAAAAATACATCTTCTTAGCCAATCCAAACAACGTATGTAAATGAAC]

[+] EMBL CD112057             [TACCCTTGCTTGAGTGCATGGATTCTAATGTATTGGCATCTCGTCCTACCAGAAGATATACAAAATGTGAATGCAGTAACTAAGATGTATGTTGTATACGCATTAACGACAGACAATGTGTCCAATTTAATTAAACTCTTCAAAATCAGTATTAATTACCTTATGTGCGTAGAAAACTCGATCCTATGAAATGGTTCTTTTCTTGGGAGTAAAAAGTTGGCGTTTTTAGGATTTGTGATTAAAATAATAGGCCATTCTTTGTTTGAGTCATTGAGTGAGAATTTCCTCACATCTACAAACGACACTAAATCGTTGTCAACAGCCACAATTCGGAAGTAACGATTATCACGCCAATCACCTAATTCCCATTCCCAATAACCTTGAGGCTGCAAAAAATACATCTTCTTAGCCAATCCAAACAACGTATGTAAATGAAC]
[+] EMBL CD112110             [TACCCTTGCTTGAGTGCATGGATTCTAATGTATTGGCATCTCGTCCTACCAGAAGATATACAAAATGTGAATGCAGTGACTAAGATGTATGTTGTATACGCATTAACGACAGACAATGTGTCCAATTTAATTAAACTCTTCAAAATCAGTATTAATTACCTTATGTGCGTAGAAAACTCGATCCTATGAAATGGTTCTTTTCTTGGGAGTAAAAAGTTGGCGTTTTTAGGATTTGTGATTAAAATAATAGGCCATTCTTTGTTTGAGTCATTGAGTGAGAATTTCCTCACATCTACAAACGACACTAAATCGTTGTCAACAGCCACAATTCGGAAGTAACGATTATCACGCCAATCACCTAATTCCCATTCCCAATAACCTTGAGGCTGCAAAAAATACATCTTCTTAGCCAATCCAAACAAAGTATGTAAATG   ]




>consensus_5439#0
TACCCTTGCTTGAGTGCATGGATTCTAATGTATTGGCATCTCGTCCTACCAGAAGATATA
CAAAATGTGAATGCAGTAACTAAGATGTATGTTGTATACGCATTAACGACAGACAATGTG
TCCAATTTAATTAAACTCTTCAAAATCAGTATTAATTACCTTATGTGCGTAGAAAACTCG
ATCCTATGAAATGGTTCTTTTCTTGGGAGTAAAAAGTTGGCGTTTTTAGGATTTGTGATT
AAAATAATAGGCCATTCTTTGTTTGAGTCATTGAGTGAGAATTTCCTCACATCTACAAAC
GACACTAAATCGTTGTCAACAGCCACAATTCGGAAGTAACGATTATCACGCCAATCACCT
AATTCCCATTCCCAATAACCTTGAGGCTGCAAAAAATACATCTTCTTAGCCAATCCAAAC
AACGTATGTAAATGAAC

consensusID : consensus_5439#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 347
fasta sequence

                              [GGCATCCTTAGCTGTGACTTCAATCACGTGAAATGAATACGGATTGGCTGACCACTGAGATGTATTCCATGGAAGTACATATAAAGGTGTTGAATTACCACTCTCCAGTGATTTGGCTGGTTCAGCGTATCCTTGATGAATGCCATTGATTGACACAGAAACTCTTAGAATAGGCGATAGTGTCCCAACTAAAATTCTTATGTGCGTAGAAAACTCGATCCTATAAAATGGTTCTTTTCTTGGGAGTAAAAAGATGGCGTTTTTAGGGTTTGTGATTAAAATAATAGGCCCCTCTTTGTTTGAGTCATCGAGAGAGAATTTCTTCACATCTACAAACGACACTATAT]

[-] EMBL CD202436             [GGCATCCTTAGCTGTGACTTCAATCACGTGAAATGAATACGGATTGGCTGACCACTGAGATGTATTCCATGGAAGTACATATAAAGGTGTTGAATTACCACTCTCCAGTGATTTGGCTGGTTCAGCGTATCCTTGATGAATGCCATTGATTGACACAGAAACTCTTAGAATAGGCGATAGTGTCCCAACTAAAATTCTTATGTGCGTAGAAAACTCGATCCTATAAAATGGTTCTTTTCTTGGGAGTAAAAAGATGGCGTTTTTAGGGTTTGTGATTAAAATAATAGGCCCCTCTTTGTTTGAGTCATCGAGAGAGAATTTCTTCACATCTACAAACGACACTATAT]




>consensus_5439#1
GGCATCCTTAGCTGTGACTTCAATCACGTGAAATGAATACGGATTGGCTGACCACTGAGA
TGTATTCCATGGAAGTACATATAAAGGTGTTGAATTACCACTCTCCAGTGATTTGGCTGG
TTCAGCGTATCCTTGATGAATGCCATTGATTGACACAGAAACTCTTAGAATAGGCGATAG
TGTCCCAACTAAAATTCTTATGTGCGTAGAAAACTCGATCCTATAAAATGGTTCTTTTCT
TGGGAGTAAAAAGATGGCGTTTTTAGGGTTTGTGATTAAAATAATAGGCCCCTCTTTGTT
TGAGTCATCGAGAGAGAATTTCTTCACATCTACAAACGACACTATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5439#0      --------------TACCCTTGCTTGAGTGCA-TGGATTCTAATGTATTGGCATCT---- 41
consensus_5439#1      GGCATCCTTAGCTGTGACTTCAATCACGTGAAATGAATACGGATTGGCTGACCACTGAGA 60
                                    *  * *   *   *** * ** ** *  **    ** *  **    

consensus_5439#0      --CGTCCTACCAGAAGATATACAAAA-TGTGAA----------TGCAGTAACTAAGATG- 87
consensus_5439#1      TGTATTCCATGGAAGTACATATAAAGGTGTTGAATTACCACTCTCCAGTGATTTGGCTGG 120
                          * * *    *  * *** ***  ***  *          * **** * *  * ** 

consensus_5439#0      TATGTTGTATACGC-ATTAACGACAGACAATGTGTCCAATTTAATTAAACTCTTCAAAA- 145
consensus_5439#1      TTCAGCGTATCCTTGATGAATGCCATTGATTGACACAGAAACTCTTAGAATAGGCGATAG 180
                      *     **** *   ** ** * **   * **   *  *     *** * *   * * * 

consensus_5439#0      --TCAGTATTAATTACCTTATGTGCGTAGAAAACTCGATCCTATGAAATGGTTCTTTTCT 203
consensus_5439#1      TGTCCCAACTAAAATTCTTATGTGCGTAGAAAACTCGATCCTATAAAATGGTTCTTTTCT 240
                        **   * ***    **************************** ***************

consensus_5439#0      TGGGAGTAAAAAGTTGGCGTTTTTAGGATTTGTGATTAAAATAATAGGCCATTCTTTGTT 263
consensus_5439#1      TGGGAGTAAAAAGATGGCGTTTTTAGGGTTTGTGATTAAAATAATAGGCCCCTCTTTGTT 300
                      ************* ************* **********************  ********

consensus_5439#0      TGAGTCATTGAGTGAGAATTTCCTCACATCTACAAACGACACTAAATCGTTGTCAACAGC 323
consensus_5439#1      TGAGTCATCGAGAGAGAATTTCTTCACATCTACAAACGACACTATAT------------- 347
                      ******** *** ********* ********************* **             

consensus_5439#0      CACAATTCGGAAGTAACGATTATCACGCCAATCACCTAATTCCCATTCCCAATAACCTTG 383
consensus_5439#1      ------------------------------------------------------------
                                                                                  

consensus_5439#0      AGGCTGCAAAAAATACATCTTCTTAGCCAATCCAAACAACGTATGTAAATGAAC 437
consensus_5439#1      ------------------------------------------------------