These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5443#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 495 fasta sequence [CTTGCTTTGTCTTTTGTTCCATGCGTACTTCTTCCTACTGGCGTAGCACATCACTGTTTTACCCGTTTCGTTTTTAATCCGATTCTTGTTGGACCCTCTAATTCAATGTTGTATCCTGATTGCAGTATTTGCTTACAAATACGTGAAGCTCTAATAATGAATACGTGTGGATTGGTCCTACCCTTAGGCTTTGGCTTTCTTTCTTCCGCAGCCTCTGCACTTATGACACGATCTTACCCTGTACCTGATCTGCTTGATGCCAAACGTATGTGGAGAATGTTCAAGCTCTATAGTACCTCGTTTCGAACCGTTGGCACGTGTTTGTTTTTGGGTCAGACAATATTTGGAACAGCATTGGTATATGCTATGATCGACAGTAATCAACGCGTGCTCAGGCAGCAGAAGTTCAGTCCTAGTAGTGAAGGATTCATCGCAGACTAAATCGAACTTTAGTGCTTGTTGTAAATTGGTTACACTTAAACTAATATAGACTTA] [+] EMBL CD079071 [CTTGCTTTGTCTTTTGTTCCATGCGTACTTCTTCCTACTGGCGTAGCACATCACTGTTTTACCCGTTTCGTTTTTAATCCGATTCTTGTTGGACCCTCTAATTCAATGTTGTATCCTGATTGCAGTATTTGCTTACAAATACGTGAAGCTCTAATAATGAATACGTGTGGATTGGTCCTACCCTTAGGCTTTGGCTTTCTTTCTTCCGCAGCCTCTGCACTTATGACACGATCTTACCCTGTACCTGATCTGCTTGATGCCAAACGTATGTGGAGAATGTTCAAGCTCTATAGTACCTCGTTTCGAACCGTTGGCACGTGTTTGTTTTTGGGTCAGACAATATTTGGAACAGCATTGGTATATGCTATGATCGACAGTAATCAACGCGTGCTCAGGCAGCAGAAGTTCAGTCCTAGTAGTGAAGGATTCATCGCAGACTAAATCGAACTTTAGTGCTTGTTGTAAATTGGTTACACTTAAACTAATATAGACTT ] [-] EMBL CD073526 [ TTGCTTTGTCTTTTGTTCCATGCGTACTTCTTCCTACTGGCGTAGCACATCACTGTTTTACCCGTTTCGTTTTTAATCCGATTCTTGTTGGACCCTCTAATTCAATGTTGTATCCTGATTGCAGTATTTGCTTACAAATACGTGAAGCTCTAATAATGAATACGTGTGGATTGGTCCTACCCTTAGGCTTTGGCTTTCTTTCTTCCGCAGCCTCTGCACTTATGACACGATCTTACCCTGTACCTGATCTGCTTGATGCCAAACGTATGTGGAGAATGTTCAAGCTCTATAGTACCTCGTTTCGAACCGTTGGCACGTGTTTGTTTTTGGGTCAGACAATATTTGGAACAGCATTGGTATATGCTATGATCGACAGTAATCAACGCGTGCTCAGGCAGCAGAAGTTCAGTCCTAGTAGTGAAGGATTCATCGCAGACTAAATCGAACTTTAGTGCTTGTTGTAAATTGGTTACACTTAAACTAATATAGACTTA] consensusID : consensus_5443#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence [GAAGTTCGNGAAAAGAAGCAGTAACAATGGCTACCTTTTTCTCAAGTTTACTTGNTAACCTATCGCTCAAGATCGTTTTTCAATCTGTTTACTAGATTTGGACTTGCTTTGTCTTTTGTTCCATGCGTACTTCTTCCTACTGGCGTAGCACATCACTGTTTTACCCGTTTCGTTTTTAATCCGATTCTTGTTGGACCCTCTAATTCAATGTTGTATCCTGATTGCAGTATTTGCTTACAAATACGTGAAGCTCTAATAATGAATACGTGTGGATTGGTCCTACCCTTAGGCTTNGGCTTTCTTTCTTCCGCAGCCTCTGCACTTATGACACGATCTTACCCTGGTACCTGATCTGCTTGGATGCCAAACGTATTGTGGAGAATGTTCAAGCTCTATAGGTACCTCGGTTTCGGAACCGNTGGGNANTTTGGGGGTTTTGGGNTCAAGACAATATTTGGGAACAANAATGGGCATTTTGCTATGAACCGAC] [+] EMBL SM679 [GAAGTTCGNGAAAAGAAGCAGTAACAATGGCTACCTTTTTCTCAAGTTTACTTGNTAACCTATCGCTCAAGATCGTTTTTCAATCTGTTTACTAGATTTGGACTTGCTTTGTCTTTTGTTCCATGCGTACTTCTTCCTACTGGCGTAGCACATCACTGTTTTACCCGTTTCGTTTTTAATCCGATTCTTGTTGGACCCTCTAATTCAATGTTGTATCCTGATTGCAGTATTTGCTTACAAATACGTGAAGCTCTAATAATGAATACGTGTGGATTGGTCCTACCCTTAGGCTTNGGCTTTCTTTCTTCCGCAGCCTCTGCACTTATGACACGATCTTACCCTGGTACCTGATCTGCTTGGATGCCAAACGTATTGTGGAGAATGTTCAAGCTCTATAGGTACCTCGGTTTCGGAACCGNTGGGNANTTTGGGGGTTTTGGGNTCAAGACAATATTTGGGAACAANAATGGGCATTTTGCTATGAACCGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5443#0 ------------------------------------------------------------ consensus_5443#1 GAAGTTCGNGAAAAGAAGCAGTAACAATGGCTACCTTTTTCTCAAGTTTACTTGNTAACC 60 consensus_5443#0 ------------------------------------------CTTGCTTTGTCTTTTGTT 18 consensus_5443#1 TATCGCTCAAGATCGTTTTTCAATCTGTTTACTAGATTTGGACTTGCTTTGTCTTTTGTT 120 ****************** consensus_5443#0 CCATGCGTACTTCTTCCTACTGGCGTAGCACATCACTGTTTTACCCGTTTCGTTTTTAAT 78 consensus_5443#1 CCATGCGTACTTCTTCCTACTGGCGTAGCACATCACTGTTTTACCCGTTTCGTTTTTAAT 180 ************************************************************ consensus_5443#0 CCGATTCTTGTTGGACCCTCTAATTCAATGTTGTATCCTGATTGCAGTATTTGCTTACAA 138 consensus_5443#1 CCGATTCTTGTTGGACCCTCTAATTCAATGTTGTATCCTGATTGCAGTATTTGCTTACAA 240 ************************************************************ consensus_5443#0 ATACGTGAAGCTCTAATAATGAATACGTGTGGATTGGTCCTACCCTTAGGCTTTGGCTTT 198 consensus_5443#1 ATACGTGAAGCTCTAATAATGAATACGTGTGGATTGGTCCTACCCTTAGGCTTNGGCTTT 300 ***************************************************** ****** consensus_5443#0 CTTTCTTCCGCAGCCTCTGCACTTATGACACGATCTTACCCTG-TACCTGATCTGCTTG- 256 consensus_5443#1 CTTTCTTCCGCAGCCTCTGCACTTATGACACGATCTTACCCTGGTACCTGATCTGCTTGG 360 ******************************************* *************** consensus_5443#0 ATGCCAAACGTAT-GTGGAGAATGTTCAAGCTCTATAG-TACCTCGTTTC--GAACCGTT 312 consensus_5443#1 ATGCCAAACGTATTGTGGAGAATGTTCAAGCTCTATAGGTACCTCGGTTTCGGAACCGNT 420 ************* ************************ ******* ** ****** * consensus_5443#0 GGCACGTGTTTG--TTTTTGGGTCA-GACAATATTTGG-AACAGCATTGGTA--TATGCT 366 consensus_5443#1 GGGNANTTTGGGGGTTTTGGGNTCAAGACAATATTTGGGAACAANAATGGGCATTTTGCT 480 ** * * * **** ** *** ************ **** * *** * **** consensus_5443#0 ATGA-TCGACAGTAATCAACGCGTGCTCAGGCAGCAGAAGTTCAGTCCTAGTAGTGAAGG 425 consensus_5443#1 ATGAACCGAC-------------------------------------------------- 490 **** **** consensus_5443#0 ATTCATCGCAGACTAAATCGAACTTTAGTGCTTGTTGTAAATTGGTTACACTTAAACTAA 485 consensus_5443#1 ------------------------------------------------------------ consensus_5443#0 TATAGACTTA 495 consensus_5443#1 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||