cluster # 5443

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Schistosoma mansoni
cluster # 5443 cluster # 5443 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5443#0 length = 495 sequences # 2

consensus_5443#1 length = 490 sequences # 1

consensusID : consensus_5443#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 495
fasta sequence

                              [CTTGCTTTGTCTTTTGTTCCATGCGTACTTCTTCCTACTGGCGTAGCACATCACTGTTTTACCCGTTTCGTTTTTAATCCGATTCTTGTTGGACCCTCTAATTCAATGTTGTATCCTGATTGCAGTATTTGCTTACAAATACGTGAAGCTCTAATAATGAATACGTGTGGATTGGTCCTACCCTTAGGCTTTGGCTTTCTTTCTTCCGCAGCCTCTGCACTTATGACACGATCTTACCCTGTACCTGATCTGCTTGATGCCAAACGTATGTGGAGAATGTTCAAGCTCTATAGTACCTCGTTTCGAACCGTTGGCACGTGTTTGTTTTTGGGTCAGACAATATTTGGAACAGCATTGGTATATGCTATGATCGACAGTAATCAACGCGTGCTCAGGCAGCAGAAGTTCAGTCCTAGTAGTGAAGGATTCATCGCAGACTAAATCGAACTTTAGTGCTTGTTGTAAATTGGTTACACTTAAACTAATATAGACTTA]

[+] EMBL CD079071             [CTTGCTTTGTCTTTTGTTCCATGCGTACTTCTTCCTACTGGCGTAGCACATCACTGTTTTACCCGTTTCGTTTTTAATCCGATTCTTGTTGGACCCTCTAATTCAATGTTGTATCCTGATTGCAGTATTTGCTTACAAATACGTGAAGCTCTAATAATGAATACGTGTGGATTGGTCCTACCCTTAGGCTTTGGCTTTCTTTCTTCCGCAGCCTCTGCACTTATGACACGATCTTACCCTGTACCTGATCTGCTTGATGCCAAACGTATGTGGAGAATGTTCAAGCTCTATAGTACCTCGTTTCGAACCGTTGGCACGTGTTTGTTTTTGGGTCAGACAATATTTGGAACAGCATTGGTATATGCTATGATCGACAGTAATCAACGCGTGCTCAGGCAGCAGAAGTTCAGTCCTAGTAGTGAAGGATTCATCGCAGACTAAATCGAACTTTAGTGCTTGTTGTAAATTGGTTACACTTAAACTAATATAGACTT ]
[-] EMBL CD073526             [ TTGCTTTGTCTTTTGTTCCATGCGTACTTCTTCCTACTGGCGTAGCACATCACTGTTTTACCCGTTTCGTTTTTAATCCGATTCTTGTTGGACCCTCTAATTCAATGTTGTATCCTGATTGCAGTATTTGCTTACAAATACGTGAAGCTCTAATAATGAATACGTGTGGATTGGTCCTACCCTTAGGCTTTGGCTTTCTTTCTTCCGCAGCCTCTGCACTTATGACACGATCTTACCCTGTACCTGATCTGCTTGATGCCAAACGTATGTGGAGAATGTTCAAGCTCTATAGTACCTCGTTTCGAACCGTTGGCACGTGTTTGTTTTTGGGTCAGACAATATTTGGAACAGCATTGGTATATGCTATGATCGACAGTAATCAACGCGTGCTCAGGCAGCAGAAGTTCAGTCCTAGTAGTGAAGGATTCATCGCAGACTAAATCGAACTTTAGTGCTTGTTGTAAATTGGTTACACTTAAACTAATATAGACTTA]




>consensus_5443#0
CTTGCTTTGTCTTTTGTTCCATGCGTACTTCTTCCTACTGGCGTAGCACATCACTGTTTT
ACCCGTTTCGTTTTTAATCCGATTCTTGTTGGACCCTCTAATTCAATGTTGTATCCTGAT
TGCAGTATTTGCTTACAAATACGTGAAGCTCTAATAATGAATACGTGTGGATTGGTCCTA
CCCTTAGGCTTTGGCTTTCTTTCTTCCGCAGCCTCTGCACTTATGACACGATCTTACCCT
GTACCTGATCTGCTTGATGCCAAACGTATGTGGAGAATGTTCAAGCTCTATAGTACCTCG
TTTCGAACCGTTGGCACGTGTTTGTTTTTGGGTCAGACAATATTTGGAACAGCATTGGTA
TATGCTATGATCGACAGTAATCAACGCGTGCTCAGGCAGCAGAAGTTCAGTCCTAGTAGT
GAAGGATTCATCGCAGACTAAATCGAACTTTAGTGCTTGTTGTAAATTGGTTACACTTAA
ACTAATATAGACTTA

consensusID : consensus_5443#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 490
fasta sequence

                              [GAAGTTCGNGAAAAGAAGCAGTAACAATGGCTACCTTTTTCTCAAGTTTACTTGNTAACCTATCGCTCAAGATCGTTTTTCAATCTGTTTACTAGATTTGGACTTGCTTTGTCTTTTGTTCCATGCGTACTTCTTCCTACTGGCGTAGCACATCACTGTTTTACCCGTTTCGTTTTTAATCCGATTCTTGTTGGACCCTCTAATTCAATGTTGTATCCTGATTGCAGTATTTGCTTACAAATACGTGAAGCTCTAATAATGAATACGTGTGGATTGGTCCTACCCTTAGGCTTNGGCTTTCTTTCTTCCGCAGCCTCTGCACTTATGACACGATCTTACCCTGGTACCTGATCTGCTTGGATGCCAAACGTATTGTGGAGAATGTTCAAGCTCTATAGGTACCTCGGTTTCGGAACCGNTGGGNANTTTGGGGGTTTTGGGNTCAAGACAATATTTGGGAACAANAATGGGCATTTTGCTATGAACCGAC]

[+] EMBL SM679                [GAAGTTCGNGAAAAGAAGCAGTAACAATGGCTACCTTTTTCTCAAGTTTACTTGNTAACCTATCGCTCAAGATCGTTTTTCAATCTGTTTACTAGATTTGGACTTGCTTTGTCTTTTGTTCCATGCGTACTTCTTCCTACTGGCGTAGCACATCACTGTTTTACCCGTTTCGTTTTTAATCCGATTCTTGTTGGACCCTCTAATTCAATGTTGTATCCTGATTGCAGTATTTGCTTACAAATACGTGAAGCTCTAATAATGAATACGTGTGGATTGGTCCTACCCTTAGGCTTNGGCTTTCTTTCTTCCGCAGCCTCTGCACTTATGACACGATCTTACCCTGGTACCTGATCTGCTTGGATGCCAAACGTATTGTGGAGAATGTTCAAGCTCTATAGGTACCTCGGTTTCGGAACCGNTGGGNANTTTGGGGGTTTTGGGNTCAAGACAATATTTGGGAACAANAATGGGCATTTTGCTATGAACCGAC]




>consensus_5443#1
GAAGTTCGNGAAAAGAAGCAGTAACAATGGCTACCTTTTTCTCAAGTTTACTTGNTAACC
TATCGCTCAAGATCGTTTTTCAATCTGTTTACTAGATTTGGACTTGCTTTGTCTTTTGTT
CCATGCGTACTTCTTCCTACTGGCGTAGCACATCACTGTTTTACCCGTTTCGTTTTTAAT
CCGATTCTTGTTGGACCCTCTAATTCAATGTTGTATCCTGATTGCAGTATTTGCTTACAA
ATACGTGAAGCTCTAATAATGAATACGTGTGGATTGGTCCTACCCTTAGGCTTNGGCTTT
CTTTCTTCCGCAGCCTCTGCACTTATGACACGATCTTACCCTGGTACCTGATCTGCTTGG
ATGCCAAACGTATTGTGGAGAATGTTCAAGCTCTATAGGTACCTCGGTTTCGGAACCGNT
GGGNANTTTGGGGGTTTTGGGNTCAAGACAATATTTGGGAACAANAATGGGCATTTTGCT
ATGAACCGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5443#0      ------------------------------------------------------------
consensus_5443#1      GAAGTTCGNGAAAAGAAGCAGTAACAATGGCTACCTTTTTCTCAAGTTTACTTGNTAACC 60
                                                                                  

consensus_5443#0      ------------------------------------------CTTGCTTTGTCTTTTGTT 18
consensus_5443#1      TATCGCTCAAGATCGTTTTTCAATCTGTTTACTAGATTTGGACTTGCTTTGTCTTTTGTT 120
                                                                ******************

consensus_5443#0      CCATGCGTACTTCTTCCTACTGGCGTAGCACATCACTGTTTTACCCGTTTCGTTTTTAAT 78
consensus_5443#1      CCATGCGTACTTCTTCCTACTGGCGTAGCACATCACTGTTTTACCCGTTTCGTTTTTAAT 180
                      ************************************************************

consensus_5443#0      CCGATTCTTGTTGGACCCTCTAATTCAATGTTGTATCCTGATTGCAGTATTTGCTTACAA 138
consensus_5443#1      CCGATTCTTGTTGGACCCTCTAATTCAATGTTGTATCCTGATTGCAGTATTTGCTTACAA 240
                      ************************************************************

consensus_5443#0      ATACGTGAAGCTCTAATAATGAATACGTGTGGATTGGTCCTACCCTTAGGCTTTGGCTTT 198
consensus_5443#1      ATACGTGAAGCTCTAATAATGAATACGTGTGGATTGGTCCTACCCTTAGGCTTNGGCTTT 300
                      ***************************************************** ******

consensus_5443#0      CTTTCTTCCGCAGCCTCTGCACTTATGACACGATCTTACCCTG-TACCTGATCTGCTTG- 256
consensus_5443#1      CTTTCTTCCGCAGCCTCTGCACTTATGACACGATCTTACCCTGGTACCTGATCTGCTTGG 360
                      ******************************************* *************** 

consensus_5443#0      ATGCCAAACGTAT-GTGGAGAATGTTCAAGCTCTATAG-TACCTCGTTTC--GAACCGTT 312
consensus_5443#1      ATGCCAAACGTATTGTGGAGAATGTTCAAGCTCTATAGGTACCTCGGTTTCGGAACCGNT 420
                      ************* ************************ ******* **   ****** *

consensus_5443#0      GGCACGTGTTTG--TTTTTGGGTCA-GACAATATTTGG-AACAGCATTGGTA--TATGCT 366
consensus_5443#1      GGGNANTTTGGGGGTTTTGGGNTCAAGACAATATTTGGGAACAANAATGGGCATTTTGCT 480
                      **    * *  *  **** ** *** ************ ****  * ***    * ****

consensus_5443#0      ATGA-TCGACAGTAATCAACGCGTGCTCAGGCAGCAGAAGTTCAGTCCTAGTAGTGAAGG 425
consensus_5443#1      ATGAACCGAC-------------------------------------------------- 490
                      ****  ****                                                  

consensus_5443#0      ATTCATCGCAGACTAAATCGAACTTTAGTGCTTGTTGTAAATTGGTTACACTTAAACTAA 485
consensus_5443#1      ------------------------------------------------------------
                                                                                  

consensus_5443#0      TATAGACTTA 495
consensus_5443#1      ----------