cluster # 5457

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Schistosoma mansoni
cluster # 5457 cluster # 5457 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5457#0 length = 662 sequences # 2

consensus_5457#1 length = 422 sequences # 1

consensusID : consensus_5457#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 662
fasta sequence

                              [TCAGATCACAGTAGAACTTTAGTCACGAAACCAAAATGTTGTTGATTACTAAGGGTATTGTTTCGGACACTTTTGTGACCATGGAGTACTTTTTAACGAGCAAACTCAAAATATACAAACGGTAAATAAGACCAAAACCGCAGGGAAGTACTACAGATATATTTCCTGATAATCCAATCAATGCTCACCATCGATGTCACTTCACTCGTTAGGATTCAACTTCAGGGCATTGTTTATGGACCGCCAAGCAACGTTAATCCGTTCATGATTGATTATTGTCCAACATTTGAGTGCAAACAGCTCTACTTGATGAATTATTCAAGGTGAAATTTTTTGAGTTTTTGCACAACCATCGTTACATTTGGTAAGATTATTGTCCAAATGATTTGACGTCCGAGTTCGGAGCAATGGAAGACAGCGTGAGAGGCCAAGTTGGATAGGCAGCGAGACCAGCATTGAAACCAATAATCAAATCAGCCAGTTCATTTGATTTTTGAGTATGCAAAAATTCATGATATAATCCACTCCAAACACTTACGGACAATCGTGACGAAAGATGATAAACAATTCTATCCGTTGCAGCATCAAAATGTCTACCGATGAAGTAGATACAAATTCGGAGTTGTGATTTGAACNATGATCCAGTTCTTTGATACTGNCAA]

[+] EMBL CD134812             [TCAGATCACAGTAGAACTTTAGTCACGAAACCAAAATGTTGTTGATTACTAAGGGTATTGTTTCGGACACTTTTGTGACCATGGAGTACTTTTTAACGAGCAAACTCAAAATATACAAACGGTAAATAAGACCAAAACCGCAGGGAAGTACTACAGATATATTTCCTGATAATCCAATCAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD170626             [                                                                                    AGTACTTTTTAACGAGCAAACTCAAAATATACAAACGGTAAATAAGACCAAAACCGCAGGGAAGTACTACAGATATATTTCCTGATAATCCAATCAATGCTCACCATCGATGTCACTTCACTCGTTAGGATTCAACTTCAGGGCATTGTTTATGGACCGCCAAGCAACGTTAATCCGTTCATGATTGATTATTGTCCAACATTTGAGTGCAAACAGCTCTACTTGATGAATTATTCAAGGTGAAATTTTTTGAGTTTTTGCACAACCATCGTTACATTTGGTAAGATTATTGTCCAAATGATTTGACGTCCGAGTTCGGAGCAATGGAAGACAGCGTGAGAGGCCAAGTTGGATAGGCAGCGAGACCAGCATTGAAACCAATAATCAAATCAGCCAGTTCATTTGATTTTTGAGTATGCAAAAATTCATGATATAATCCACTCCAAACACTTACGGACAATCGTGACGAAAGATGATAAACAATTCTATCCGTTGCAGCATCAAAATGTCTACCGATGAAGTAGATACAAATTCGGAGTTGTGATTTGAACNATGATCCAGTTCTTTGATACTGNCAA]




>consensus_5457#0
TCAGATCACAGTAGAACTTTAGTCACGAAACCAAAATGTTGTTGATTACTAAGGGTATTG
TTTCGGACACTTTTGTGACCATGGAGTACTTTTTAACGAGCAAACTCAAAATATACAAAC
GGTAAATAAGACCAAAACCGCAGGGAAGTACTACAGATATATTTCCTGATAATCCAATCA
ATGCTCACCATCGATGTCACTTCACTCGTTAGGATTCAACTTCAGGGCATTGTTTATGGA
CCGCCAAGCAACGTTAATCCGTTCATGATTGATTATTGTCCAACATTTGAGTGCAAACAG
CTCTACTTGATGAATTATTCAAGGTGAAATTTTTTGAGTTTTTGCACAACCATCGTTACA
TTTGGTAAGATTATTGTCCAAATGATTTGACGTCCGAGTTCGGAGCAATGGAAGACAGCG
TGAGAGGCCAAGTTGGATAGGCAGCGAGACCAGCATTGAAACCAATAATCAAATCAGCCA
GTTCATTTGATTTTTGAGTATGCAAAAATTCATGATATAATCCACTCCAAACACTTACGG
ACAATCGTGACGAAAGATGATAAACAATTCTATCCGTTGCAGCATCAAAATGTCTACCGA
TGAAGTAGATACAAATTCGGAGTTGTGATTTGAACNATGATCCAGTTCTTTGATACTGNC
AA

consensusID : consensus_5457#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [CGTCCATTCTATAGATGACTTTTACTGTTTATAAAAGTAAGAAAATAGAGAGCCGTAATATAGTCTGTTTTAGGATATCTCCGATGATGTTTCAAGACGCTCAGTTATCCTACCATTCGTGGAGCTATAATATTTTAAAAGTTGTCAACCCACACATTACTATTCTCTCTGTTAGACTGTGTCATAAGCCAACTAACTCTTGCATCCCCCCACATGTTCCAGCATCAAAAAGCAATACCCGATAATTCTTTGAAGCATACATAAGACCTGACTAAACAATGTGGTTTTATTATGACCTCACTGACTGAGATCTGTCTCCACTATAGCCGAACTCGGACGTCAAATCATTTGGACAATAATCTTACCAAATGTAACGATGGTTGTGCAAAAACTCAAAAAATTTCACCTTGAATAATTCATCA]

[+] EMBL CD083973             [CGTCCATTCTATAGATGACTTTTACTGTTTATAAAAGTAAGAAAATAGAGAGCCGTAATATAGTCTGTTTTAGGATATCTCCGATGATGTTTCAAGACGCTCAGTTATCCTACCATTCGTGGAGCTATAATATTTTAAAAGTTGTCAACCCACACATTACTATTCTCTCTGTTAGACTGTGTCATAAGCCAACTAACTCTTGCATCCCCCCACATGTTCCAGCATCAAAAAGCAATACCCGATAATTCTTTGAAGCATACATAAGACCTGACTAAACAATGTGGTTTTATTATGACCTCACTGACTGAGATCTGTCTCCACTATAGCCGAACTCGGACGTCAAATCATTTGGACAATAATCTTACCAAATGTAACGATGGTTGTGCAAAAACTCAAAAAATTTCACCTTGAATAATTCATCA]




>consensus_5457#1
CGTCCATTCTATAGATGACTTTTACTGTTTATAAAAGTAAGAAAATAGAGAGCCGTAATA
TAGTCTGTTTTAGGATATCTCCGATGATGTTTCAAGACGCTCAGTTATCCTACCATTCGT
GGAGCTATAATATTTTAAAAGTTGTCAACCCACACATTACTATTCTCTCTGTTAGACTGT
GTCATAAGCCAACTAACTCTTGCATCCCCCCACATGTTCCAGCATCAAAAAGCAATACCC
GATAATTCTTTGAAGCATACATAAGACCTGACTAAACAATGTGGTTTTATTATGACCTCA
CTGACTGAGATCTGTCTCCACTATAGCCGAACTCGGACGTCAAATCATTTGGACAATAAT
CTTACCAAATGTAACGATGGTTGTGCAAAAACTCAAAAAATTTCACCTTGAATAATTCAT
CA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5457#0      TCAGATCACAGTAGAACTTTAGTCACGAAACCAAAATGTTGTTGATTACTAAGGGTATTG 60
consensus_5457#1      ------------------------------------------------------------
                                                                                  

consensus_5457#0      TTTCGGACACTTTTGTGACCATGGAGTACTTTTTAACGAGCAAACTCAAAATATACAAAC 120
consensus_5457#1      ------------------------CGTCCATTCTATAGATGACTTTTACTGTTTATAAA- 35
                                               ** * ** **  **  *   * *   * ** *** 

consensus_5457#0      GGTAAATAAGACCAAAACCGCAGGGAAGTAC---TACAGATATATTTCCTGATAATCCAA 177
consensus_5457#1      AGTAAGAAAATAGAGAGCCGTAATATAGTCTGTTTTAGGATATCTCCGATGATGTTTCAA 95
                       ****  **    * * *** *    ***     *   ***** *    ****  * ***

consensus_5457#0      TCAATGCTCACCATCGATGTCACTTCACTCGTTAGGATTCAAC-TTCAGGGCATTGTTTA 236
consensus_5457#1      --GACGCTCA-----GTTATCCTACCATTCGTGGAGCTATAATATTTTAAAAGTTGTCAA 148
                         * *****     * * **    ** ****   * *  **  **       ****  *

consensus_5457#0      TGGACCGCCAAGCAACGTTAATCCGTTCATGATTGATTATTGTCCAACATTTGAGTGCAA 296
consensus_5457#1      C---CCACACATTACTATTCTCTCTGTTAGACTGTGTCATAAGCCAACTAACTCTTGCAT 205
                          ** *  *  *   **    *  * *   *   * **   *****       **** 

consensus_5457#0      ACAGCTCTACTTGATGAATTATTCAAGGTGAAATTTTTTGAGTTTTTGCACAACCATCGT 356
consensus_5457#1      CC--CCCCACATGTTCCAGCAT-CAAAAAGCAATACCCGATAATTCTTTGAAGCATACAT 262
                       *  * * ** ** *  *  ** ***   * ***         ** *    * *   * *

consensus_5457#0      TACATTTGGTAAGATTATTGTCCAAATGATTTGACGTCCGAGTTCGGAGCAATGGAAGAC 416
consensus_5457#1      AAGACCTGACTAAAC-AATGTGGTTTTATTATGACCTCA-----CTGACTGAGATCTGTC 316
                       * *  **   * *  * ***     *  * **** **      * **   *     * *

consensus_5457#0      AGCGTGAGAGGCCAAGTTGGATAGGCAGCGAGACCAGCATTGAAACCAATAATCAAATCA 476
consensus_5457#1      TCCACTATAGCCGAACTCGGAC-----GTCAAATCA--TTTGGA--CAATAATCTTACCA 367
                        *   * ** * ** * ***      *  * * **   *** *  ********  * **

consensus_5457#0      GCCAGTTCATTTGATTTTTGAGTATGCAAAAATTCATGATATAATCCACTCCAAACACTT 536
consensus_5457#1      A-------ATGTAACGAT-GGTTGTGCAAAAACTCAAAAAAT--TTCACCTTGAATAATT 417
                              ** * *   * *  * ******** ***  * **  * ***    ** * **

consensus_5457#0      ACGGACAATCGTGACGAAAGATGATAAACAATTCTATCCGTTGCAGCATCAAAATGTCTA 596
consensus_5457#1      CATCA------------------------------------------------------- 422
                          *                                                       

consensus_5457#0      CCGATGAAGTAGATACAAATTCGGAGTTGTGATTTGAACNATGATCCAGTTCTTTGATAC 656
consensus_5457#1      ------------------------------------------------------------
                                                                                  

consensus_5457#0      TGNCAA 662
consensus_5457#1      ------