These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5460#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 618 fasta sequence [GGTGATCATAAGTATTTGAAAAACACATGTACATCTATGTATTCATTCATATATACTTACTCTTTGTTTCTTTTCCTATAGGAATAAACATTACCTGTTCAATATATATACATCCTACCATATTAACCATATTATTATTATTACCGTTATTATAATAATAAATGTTTACAATTATAATTCCAATATGTTTATTCACGTGACCATTTCACTAACATCCATGATAGGAATAAAAAAATGAACTTTTGTTCTCCAATTATGTATCATACATGTTTATTTCCTTTCATAAAACTATTTAATATTCTAACTTCCTCGTAGTATTGTTACTTTTGTTCAAACAAAAACAAACAAACAAACATTCTATTCTTCTATTTTATGATGGTATAAACAACTGTGACTGACTTTTTTTTTCATAAGTAATCTTCTCAGTATCATCCCTACAACAGAATTTCATTGGTGTAATCTTATTTAATGCAGTAAATCTCTTGTAATATTTGGGTACTTTATTATTATTATTATTAAGATGGATGAACATCCTAGTAATATTGCAGGAAAAAAAAGATATAACTAATGATTTTTAAACTTTTCTTATCACTNTTTTCTTGCACTGTAATTAATTTA] [+] EMBL CD078637 [GGTGATCATAAGTATTTGAAAAACACATGTACATCTATGTATTCATTCATATATACTTACTCTTTGTTTCTTTTCCTATAGGAATAAACATTACCTGTTCAATATATATACATCCTACCATATTAACCATATTATTATTATTACCGTTATTATAATAATAAATGTTTACAATTATAATTCCAATATGTTTATTCACGTGACCATTTCACTAACATCCATGATAGGAATAAAAAAATGAACTTTTGTTCTCCAATTATGTATCATACATGTTTATTTCCTTTCATAAAACTATTTAATATTCTAACTTCCTCGTAGTATTGTTACTTTTGTTCAAACAAAAACAAACAAACAAACATTCTATTCTTCTATTTTATGATGGTATAAACAACTGTGACTGACTTTTTTTTTCATAAGTAATCTTCTCAGTATCATCCCTACAACAGAATTTCATTGGTGTAATCTTATTTAATGCAGTAAATCTCTTGTAATATTTGGGTACTTTATTATTATTATTATTAAGATGGATGAACATCCTAGTAATATTGCAGGAAAAAAAAGATATAACTAATGATTTTTAAACTTTTCTTATCACTNTTTTCTTGCACTGTAATTAATTTA] [-] EMBL CD196889 [ TTATTACCGTTATTATAATAATAAATGTTTACAATTATAATTCCAATATGTTTATTCACGTGACCATTTCACTAACATCCATGATAGGAATAAAAAAATGAACTTTTGTTCTCCAATTATGTATCATACATGTTTATTTCCTTTCATAAAACTATTTAATATTCTAACTTCCTCGTAGTATTGTTACTTTTGTTCAAACAAAAACAAACAAACAAACATTCTATTCTTCTATTTTATGATGGTATAAACAACTGTGACTGACTTTTTTTTTCATAAGTAATCTTCTCAGTATCATCCCTACAACAGAATTTCATTGGTGTAATCTTATTTAAT ] consensusID : consensus_5460#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [CGGGAATCCACACACACACACAAGAAAAGATATTACATCCTACCATATTAACCATATTATTATTATTACCGTTATTATAATAATAAATGTTTACAATTATAATTCCAATATGTTTATTCACGTGACCATTTCACTAACATCCATGATAGGAATAAAAAAATGAACTTTTGTTCTCCAATTATGTATCATACATGTTTATTTCCTTTCATAAAACTATTTAATATTCTAACTTCCTCGTAGTATTGTTACTTTTGTTTGTTTGTCTATTTGTTGATCAATTCTGTTCAGAAAATACAACTTTACACACACACACACACACAAGAAAAGATATTACATCCTACCATATTAACCATATTATTATTATTACCGTTATTATAATAATAAATGTTTACAATTATAATTCCAATATGTTTATTCACGTGACCATTTCACTAACATCCATGATAGGAATAAAAAAATGAACTTTTGTTCTCCAATTATGTATCATACATGTTTATTTCCTTTCATAAAACTATTTAATATTCTAAATTCCCGA] [+] EMBL CD062567 [CGGGAATCCACACACACACACAAGAAAAGATATTACATCCTACCATATTAACCATATTATTATTATTACCGTTATTATAATAATAAATGTTTACAATTATAATTCCAATATGTTTATTCACGTGACCATTTCACTAACATCCATGATAGGAATAAAAAAATGAACTTTTGTTCTCCAATTATGTATCATACATGTTTATTTCCTTTCATAAAACTATTTAATATTCTAACTTCCTCGTAGTATTGTTACTTTTGTTTGTTTGTCTATTTGTTGATCAATTCTGTTCAGAAAATACAACTTTACACACACACACACACACAAGAAAAGATATTACATCCTACCATATTAACCATATTATTATTATTACCGTTATTATAATAATAAATGTTTACAATTATAATTCCAATATGTTTATTCACGTGACCATTTCACTAACATCCATGATAGGAATAAAAAAATGAACTTTTGTTCTCCAATTATGTATCATACATGTTTATTTCCTTTCATAAAACTATTTAATATTCTAAATTCCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5460#0 GGTGATCATAAGTATTTGAAAAACACATGTACATCTATGTATTCATTCATATATACTTAC 60 consensus_5460#1 ------------------------------------------------------------ consensus_5460#0 TCTTTGTTTCTTTTCCTATAGGAATAAACATTACCTGTTCAATATATATACATCCTACCA 120 consensus_5460#1 --------------CGGGAATCCACACACACACACAAGAAAAGATAT-TACATCCTACCA 45 * * * * *** * ** **** ************ consensus_5460#0 TATTAACCATATTATTATTATTACCGTTATTATAATAATAAATGTTTACAATTATAATTC 180 consensus_5460#1 TATTAACCATATTATTATTATTACCGTTATTATAATAATAAATGTTTACAATTATAATTC 105 ************************************************************ consensus_5460#0 CAATATGTTTATTCACGTGACCATTTCACTAACATCCATGATAGGAATAAAAAAATGAAC 240 consensus_5460#1 CAATATGTTTATTCACGTGACCATTTCACTAACATCCATGATAGGAATAAAAAAATGAAC 165 ************************************************************ consensus_5460#0 TTTTGTTCTCCAATTATGTATCATACATGTTTATTTCCTTTCATAAAACTATTTAATATT 300 consensus_5460#1 TTTTGTTCTCCAATTATGTATCATACATGTTTATTTCCTTTCATAAAACTATTTAATATT 225 ************************************************************ consensus_5460#0 CTAACTTCCTCGTAGTATTGTTACTTTTGTTCAAACAAAAACAAACAAACAAACATTCTA 360 consensus_5460#1 CTAACTTCCTCGTAGTATTGTTACTTTTGTTTGTTTGTCTATTTGTTGATCAA--TTCTG 283 ******************************* * * ** **** consensus_5460#0 TTC------TTCTATTTTATGATGGTATAAACA-ACTGTGACTGACTTT---TTTTTTCA 410 consensus_5460#1 TTCAGAAAATACAACTTTACACACACACACACACACAAGAAAAGATATTACATCCTACCA 343 *** * * * **** * * *** ** * ** ** * * ** consensus_5460#0 TA--AGTAATCTTCTCAGTATCATCCCTACAACAGAATTTCATTGGTGTAATCTTATTTA 468 consensus_5460#1 TATTAACCATATTATTATTATTACCGTTATTATAATAATAAATGTTTACAATTATAATTC 403 ** * ** ** * * *** * * ** * * * * ** * *** ** ** consensus_5460#0 ATGCAGTAAATCTCTTGTAATATTTGGGTACTTTATTATTATT-ATTATTAAGATGGATG 527 consensus_5460#1 ---CAATATGTTTATT----CACGTGACCATTTCACTAACATCCATGATAGGAATAAAAA 456 ** ** * * ** * ** * ** * ** ** ** ** ** * consensus_5460#0 AACATCCTAGTAATATTGCAGGAAAAAAAAGATATAACTAATGATTTTTA-AACTTTTCT 586 consensus_5460#1 AATGAACTTTTGTTCTCCAATTATGTATCATACATGTTTATTTCCTTTCATAAAACTATT 516 ** ** * * * * * * * * ** ** * *** * ** * * consensus_5460#0 TATCACTNTTTTCTTGCACTGTAATTAATTTA 618 consensus_5460#1 TAATATTCTAAATTCCCGA------------- 535 ** * * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||