These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5476#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence [GGTTGAATAAAATAATGTGGGAGCGAAGACTCTGTTAGACATGGGAGGGTTGTCCGCCATGAGCCTAAGTGGAGATGCTAAGGTGGGGCCANAAATCTCCATAATGTGCACTTTTTTTAATGAGAGGTTGGAGTAGATATATTTTTGCACTTTTTCCGCCCCATATTTTACATTTTTTACAACCTTGTTCCATCAAATGATTGTCTGGTATGAAAGAAAAACGTACAAAATCTAAGGAAACATGAGAATTTAAGAGAAGAGTGG] [-] EMBL CD156085 [GGTTGAATAAAATAATGTGGGAGCGAAGACTCTGTTAGACATGGGAGGGTTGTCCGCCATGAGCCTAAGTGGAGATGCTAAGGTGGGGCCANAAATCTCCATAATGTGCACTTTTTTTAATGAGAGGTTGGAGTAGATATATTTTTGCACTTTTTCCGCCCCATATTTTACATTTTTTACAACCTTGTTCCATCAAATGATTGTCTGGTATGAAAGAAAAACGTACAAAATCTAAGGAAACATGAGAATTTAAGAGAAGAGTGG] consensusID : consensus_5476#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 264 fasta sequence [AGGTTGAATGAAGGAATGTGGGAGCGAAGACTCTGTGAGACATGGGAGGGTTGACCGCCATGAGCCTAAGTGGAGATCCAAAGGTGCAACCATATATCTCCAGAATGTCCACTTTTTAAAGTGAGTGGTCTGAGTAGATATATTTTTGCACTTTCTCCGCCCCATATTTTACATCTTCTACAACCTTGTTCCATCAAATGATTGTCTGGTATGAAAGAAAAACGTACAAAATCTAAGGAAACATGAGAATTTAAGAGAAGAGTG] [+] EMBL CD156570 [AGGTTGAATGAAGGAATGTGGGAGCGAAGACTCTGTGAGACATGGGAGGGTTGACCGCCATGAGCCTAAGTGGAGATCCAAAGGTGCAACCATATATCTCCAGAATGTCCACTTTTTAAAGTGAGTGGTCTGAGTAGATATATTTTTGCACTTTCTCCGCCCCATATTTTACATCTTCTACAACCTTGTTCCATCAAATGATTGTCTGGTATGAAAGAAAAACGTACAAAATCTAAGGAAACATGAGAATTTAAGAGAAGAGTG] [+] EMBL CD156254 [AGGTTGAATGAAGGAATGTGGGAGCGAAGACTCTGTGAGACATGGGAGGGTTGACCGCCATGAGCCTAAGTGGAGATCCAAAGGTGCAACCATATATCTCCAGAATGTCCACTTTTTAAAATGAGTGGTCTGAGTAGATATATTTTTGCACTTTCTCCGCCCCATATTTTACATCTTCTACAACCTTGTTCCATCAAATGATTGTCTGGTATGAAAGAAAAACGTACAAAATCTAAGGAAACATGAGAATTTAAGAGAAGAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5476#0 -GGTTGAATAAAATAATGTGGGAGCGAAGACTCTGTTAGACATGGGAGGGTTGTCCGCCA 59 consensus_5476#1 AGGTTGAATGAAGGAATGTGGGAGCGAAGACTCTGTGAGACATGGGAGGGTTGACCGCCA 60 ******** ** ********************** **************** ****** consensus_5476#0 TGAGCCTAAGTGGAGATGCTAAGGTGGGGCCANAAATCTCCATAATGTGCACTTTTTTTA 119 consensus_5476#1 TGAGCCTAAGTGGAGATCCAAAGGTGCAACCATATATCTCCAGAATGTCCACTTTTTAAA 120 ***************** * ****** *** * ******* ***** ******** * consensus_5476#0 ATGAGAGGTTGGAGTAGATATATTTTTGCACTTTTTCCGCCCCATATTTTACATTTTTTA 179 consensus_5476#1 GTGAGTGGTCTGAGTAGATATATTTTTGCACTTTCTCCGCCCCATATTTTACATCTTCTA 180 **** *** *********************** ******************* ** ** consensus_5476#0 CAACCTTGTTCCATCAAATGATTGTCTGGTATGAAAGAAAAACGTACAAAATCTAAGGAA 239 consensus_5476#1 CAACCTTGTTCCATCAAATGATTGTCTGGTATGAAAGAAAAACGTACAAAATCTAAGGAA 240 ************************************************************ consensus_5476#0 ACATGAGAATTTAAGAGAAGAGTGG 264 consensus_5476#1 ACATGAGAATTTAAGAGAAGAGTG- 264 ************************ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||