These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5478#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence [TATCTGTCACCTATATTATTGGAACTGTTTCTACCACGTTGAATACAGAGCTTGATTTCCAGTTTATCACTTCACGTATAGCAGGTTAGTAATCGTTTATTATCCTACTCACTGTAATGTATTAGTGTTAATATTTTATGGAGGGTTCTATAAGGTTCATACTTAACCTTCTCATTGTTGTTGCTAACTATTGCGAATTTGTTCACGTTTATGTAGTCTTAACAGCATCCACGATCAGGTTTACATACAAAAGTGCAGCGTTTCATAAAATTTGTATCCATCTACCCACCACCTTCAGTGTGTTGTATAATCCCTCACTCACATAAGATCCCTGTTGGTAAAGTAAAGAATAGCTCGCTGCCAGACATCTGATACCGTCAATAATTAAGTTTGGATTCATGTTTATTATGAATTCTCAATGGTGTTTTCTTTCTCCAGTGATGCTGTGATTGTATTTTTCTGGTTACAGTCAAATACATACCTAGTACGAATCTAATTTTCACTTGTTTTCTAACACCATTTTTCAGCAAGA] [+] EMBL CD069486 [TATCTGTCACCTATATTATTGGAACTGTTTCTACCACGTTGAATACAGAGCTTGATTTCCAGTTTATCACTTCACGTATAGCAGGTTAGTAATCGTTTATTATCCTACTCACTGTAATGTATTAGTGTTAATATTTTATGGAGGGTTCTATAAGGTTCATACTTAACCTTCTCATTGTTGTTGCTAACTATTGCGAATTTGTTCACGTTTATGTAGTCTTAACAGCATCCACGATCAGGTTTACATACAAAAGTGCAGCGTTTCATAAAATTTGTATCCATCTACCCACCACCTTCAGTGTGTTGTATAATCCCTCACTCACATAAGATCCCTGTTGGTAAAGTAAAGAATAGCTCGCTGCCAGACATCTGATACCGTCAATAATTAAGTTTGGATTCATGTTTATTATGAATTCTCAATGGTGTTTTCTTTCTCCAGTGATGCTGTGATTGTATTTTTCTGGTTACAGTCAAATACATACCTAGTACGAATCTAATTTTCACTTGTTTTCTAACACCATTTTTCAGCAAGA] consensusID : consensus_5478#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 507 fasta sequence [AATGATCTGAACGATATGGACGATTACTAAGATTATACACGGCATAAGCATCTTGAAAACGTGTATCTAGCATATTTTGCATCTCTTCAATAGAATTCACGTTAGCAAGCACTTCAAATCCACTTTCAATGGGGAAAGATGTAACTGCTATACGTGAAGTGATAAACTGGAAATCAAGCTCTGTATCCAACGTGGTAGAAACAGTTCCAATAACTTTAGTTGATGCATCTCGTATATTACGAATTAAATTGCCAGCGCCTCCTTTAATCATACCAAGCATATTACTCATAGATTGATTGGATAATTGTTGATTACTTGAAATTTGATTGGCTGTAGATGATTGAGTTGTTATGACTACTGTTGATGATGATGATGATGACGATGATGATGTTGGTGGATTAAAACTAACTGTTGGATTTAATTTCTGTTGTGAGAGCATTGTTATAGGATTAGGTCTAGATGGTTTATTATATGACAGTTGTGGATTTGCTACAACATTATTTTCTG] [+] EMBL CD119897 [AATGATCTGAACGATATGGACGATTACTAAGATTATACACGGCATAAGCATCTTGAAAACGTGTATCTAGCATATTTTGCATCTCTTCAATAGAATTCACGTTAGCAAGCACTTCAAATCCACTTTCAATGGGGAAAGATGTAACTGCTATACGTGAAGTGATAAACTGGAAATCAAGCTCTGTATCCAACGTGGTAGAAACAGTTCCAATAACTTTAGTTGATGCATCTCGTATATTACGAATTAAATTGCCAGCGCCTCCTTTAATCATACCAAGCATATTACTCATAGATTGATTGGATAATTGTTGATTACTTGAAATTTGATT ] [+] EMBL CD062679 [ TTAATCATACCAAGCATATTACTCATAGATTGATTGTATTATTGTTGATTACTTGAAATTTGATTGGCTGTAGATGATTGAGTTGTTATGACTACTGTTGATGATGATGATGATGACGATGATGATGTTGGTGGATTAAAACTAACTGTTGGATTTAATTTCTGTTGTGAGAGCATTGTTATAGGATTAGGTCTAGATGGTTTATTATATGACAGTTGTGGATTTGCTACAACATTATTTTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5478#0 TATCTGTCACCTATATTATTGGAACTGTTTCTACCACGTTGAATACAGAGCTTGATTTCC 60 consensus_5478#1 ----AATGATCTGAACGATATGGACGATTACTA--AGATT--ATACACGGCATAAG---C 49 * * ** * ** * ** ** *** * ** ***** ** * * * consensus_5478#0 AGTTTATCACTTCACGTATAGCAGGTTA-GTAATCGTTTATTATCCTACTCACTGTAATG 119 consensus_5478#1 ATCTTGAAAACGTGTATCTAGCATATTTTGCATCTCTTCAATAGAATTCACGTTAGCAAG 109 * ** * * ***** ** * * ** * ** * * * * * * consensus_5478#0 TA-TTAGTGTTAATATTTTATGGAGGGTTCTATAAGGTTCATACTTAACCTTCTCA--TT 176 consensus_5478#1 CACTTCAAATCCACTTTCAATGGGGAAAGATGTAACTGCTATACGTGAAGTGATAAACTG 169 * ** * * ** **** * * *** **** * * * * * * consensus_5478#0 GTTGTTGCTAACTATTGCGAATTTGTTCAC----GTTTATGTAGTCTTAACAGCATCCAC 232 consensus_5478#1 GAAATCAAGCTCTGTATCCAACGTGGTAGAAACAGTTCCAATAACTTTAGTTG-ATGCAT 228 * * ** * * ** ** * *** ** *** * ** ** consensus_5478#0 GATCAGGTTTACATACAAAAGTGC-AGCGTTTCATAAAATTTGTATCCATCTACCCACCA 291 consensus_5478#1 CTCGTATATTACGAATTAAATTGCCAGCGCCTCCTTTAATC-ATACCAA---GCATATTA 284 **** * *** *** **** ** * *** ** * * * * * consensus_5478#0 CCTTCAGTGTG-TTGTATAATCCCTCACTCACATAAGATCCCTGTTGGTAAAGTAAAGAA 350 consensus_5478#1 CTCATAGATTGATTGGATAATTGTTGATT-ACTTGAAATTTGATTGGCTGTAG--ATGAT 341 * ** ** *** ***** * * * ** * * ** * * * ** * ** consensus_5478#0 TAGCTCGCTGCCAG-ACATCTGATACCGTCAATAATTAAGTTTGGATTCATGTTTATTAT 409 consensus_5478#1 TGAGTTGTTATGACTACTGTTGATGATGATGATGATGACGATGATGATGTTGGTGGATTA 401 * * * * * ** **** * ** ** * * * * ** * * consensus_5478#0 GAATTCTCAATGGTGTTTTCTTTCTCCAGTGATGCTGTGATTGTATTTTTCTGGTTACA- 468 consensus_5478#1 AAACTAACTGTTGGATTTAATTTCTGTTGTGAGAGCATTGTTATAGGATTAGGTCTAGAT 461 ** * * * * *** ***** **** * ** ** ** * ** * consensus_5478#0 -GTCAAATACATACCTAGTACGAATCTAATTTTCACTTGTTTTCTAACACCATTTTTCAG 527 consensus_5478#1 GGTTTATTATATGACAGTTGTGGATTTGCTACAACATTATTTTCTG-------------- 507 ** * ** ** * * * ** * * ** ****** consensus_5478#0 CAAGA 532 consensus_5478#1 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||