cluster # 5494

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Schistosoma mansoni
cluster # 5494 cluster # 5494 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5494#0 length = 491 sequences # 1

consensus_5494#1 length = 329 sequences # 2

consensusID : consensus_5494#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence

                              [ATAAACATACTCTCATTTTTATCATTAATATGTACCGACAATTTATTCTCTGAATGCACAGTATGATTATTGATTTGATATAAAACAGGAAGAGATTTAGAAACCGAGTTCAAGTTCAAAGAATTTTCGAAAAGACATGGGAGTGAAGTACTCAGAAATACTTGTGGAGTATTACTGGATCCTTTTAAATTGTTTTCATCAGTTAGGTTTGAATCCGAAAAATCAACCGGAACATCAACTTTCGGCTGACTCCTAATAAAGCTACTTGGTGTAACGTTCTGTTGTTCAGCTATACACTTTAGAGAGTCCTCATCCGAATGAATAGCTGAGGAATCTTCATTCGACTTTCGAGTTGAAGCCATTTCTTCATTGTTCACTTTTTACAAAACCCATGTGGTCGACTGGCTGCAAGCACAGTAGAGTTGATGGTAACCGCAGTGAAGAAGCAAAGCTAAATCCCTTTATGCTATATGTGTACACTTAAGAAGATA]

[+] EMBL CD161341             [ATAAACATACTCTCATTTTTATCATTAATATGTACCGACAATTTATTCTCTGAATGCACAGTATGATTATTGATTTGATATAAAACAGGAAGAGATTTAGAAACCGAGTTCAAGTTCAAAGAATTTTCGAAAAGACATGGGAGTGAAGTACTCAGAAATACTTGTGGAGTATTACTGGATCCTTTTAAATTGTTTTCATCAGTTAGGTTTGAATCCGAAAAATCAACCGGAACATCAACTTTCGGCTGACTCCTAATAAAGCTACTTGGTGTAACGTTCTGTTGTTCAGCTATACACTTTAGAGAGTCCTCATCCGAATGAATAGCTGAGGAATCTTCATTCGACTTTCGAGTTGAAGCCATTTCTTCATTGTTCACTTTTTACAAAACCCATGTGGTCGACTGGCTGCAAGCACAGTAGAGTTGATGGTAACCGCAGTGAAGAAGCAAAGCTAAATCCCTTTATGCTATATGTGTACACTTAAGAAGATA]




>consensus_5494#0
ATAAACATACTCTCATTTTTATCATTAATATGTACCGACAATTTATTCTCTGAATGCACA
GTATGATTATTGATTTGATATAAAACAGGAAGAGATTTAGAAACCGAGTTCAAGTTCAAA
GAATTTTCGAAAAGACATGGGAGTGAAGTACTCAGAAATACTTGTGGAGTATTACTGGAT
CCTTTTAAATTGTTTTCATCAGTTAGGTTTGAATCCGAAAAATCAACCGGAACATCAACT
TTCGGCTGACTCCTAATAAAGCTACTTGGTGTAACGTTCTGTTGTTCAGCTATACACTTT
AGAGAGTCCTCATCCGAATGAATAGCTGAGGAATCTTCATTCGACTTTCGAGTTGAAGCC
ATTTCTTCATTGTTCACTTTTTACAAAACCCATGTGGTCGACTGGCTGCAAGCACAGTAG
AGTTGATGGTAACCGCAGTGAAGAAGCAAAGCTAAATCCCTTTATGCTATATGTGTACAC
TTAAGAAGATA

consensusID : consensus_5494#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 329
fasta sequence

                              [TACTCTCATTTTTATCATTAATATGTACCGACAATTTATTCTCTGAATGCACAGTATGATTATTGATTTGATATAAAACAGGAGGAGATTTAGAAACCGAGTTCAAGTTCAAAGAATCTGTAAGTAAAAAAAAATGGAAATTTTTCGAAAAGACATGGGAGTGAAGTACTCAGAAATACTTGTGGAGTATTACTGGATCCTTTTAAATTGTTTTCATCAGTTAGGTTTGAATTCGAAAAATCAACCGGAACATCAACTTTCGGCTGACTCCTAATAAAGCTACTTGGTGTAACGTTCTGTTGTTCAGCTATACACTTTAGAGAGTCCTC]

[-] EMBL CD117796             [TACTCTCATTTTTATCATTAATATGTACCGACAATTTATTCTCTGAATGCACAGTATGATTATTGATTTGATATAAAACAGGAGGAGATTTAGAAACCGAGTTCAAGTTCAAAGAATCTGTAAGTAAAAAAAAATGGAAATTTTTCGAAAAGACATGGGAGTGAAGTACTCAGAAATACTTGTGGAGTATTACTGGATCCTTTTAAATTGTTTTCATCAGTTAGGTTTGAATTCGAAAAATCAACCGGAACATCAACTTTCGGCTGACTCCTAATAAAGCTACTTGGTGTAACGTTCTGTTGTTCAGCTATACACTTTAGAGAGTCCTC]
[-] EMBL CD117768             [TACTCTCATTTTTATCATTAATATGTACCGACAATTTATTCTCTGAATGCACAGTATGATTATTGATTTGATATAAAACAGGAGGAGATTTAGAAACCGAGTTCAAGTTCAAAGAATCTGTAAGTAAAAAAAAATGGAAATTTTTCGAAAAGACATGGGAGTGAAGTACTCAGAAATACTTGTGGAGTATTACTGGATCCTTTTAAATTGTTTTCATCAGTTAGGTTTGAATTCGAAAAATCAACCGGAACATCAACTTTCGGCTGACTCCTAATAAAGCTACTTGGTGTAACGTTCTGTTGTTCAGCTATACACTTTAGAGAGTCCTC]




>consensus_5494#1
TACTCTCATTTTTATCATTAATATGTACCGACAATTTATTCTCTGAATGCACAGTATGAT
TATTGATTTGATATAAAACAGGAGGAGATTTAGAAACCGAGTTCAAGTTCAAAGAATCTG
TAAGTAAAAAAAAATGGAAATTTTTCGAAAAGACATGGGAGTGAAGTACTCAGAAATACT
TGTGGAGTATTACTGGATCCTTTTAAATTGTTTTCATCAGTTAGGTTTGAATTCGAAAAA
TCAACCGGAACATCAACTTTCGGCTGACTCCTAATAAAGCTACTTGGTGTAACGTTCTGT
TGTTCAGCTATACACTTTAGAGAGTCCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5494#0      ATAAACATACTCTCATTTTTATCATTAATATGTACCGACAATTTATTCTCTGAATGCACA 60
consensus_5494#1      -------TACTCTCATTTTTATCATTAATATGTACCGACAATTTATTCTCTGAATGCACA 53
                             *****************************************************

consensus_5494#0      GTATGATTATTGATTTGATATAAAACAGGAAGAGATTTAGAAACCGAGTTCAAGTTCAAA 120
consensus_5494#1      GTATGATTATTGATTTGATATAAAACAGGAGGAGATTTAGAAACCGAGTTCAAGTTCAAA 113
                      ****************************** *****************************

consensus_5494#0      GAAT-------------------------TTTCGAAAAGACATGGGAGTGAAGTACTCAG 155
consensus_5494#1      GAATCTGTAAGTAAAAAAAAATGGAAATTTTTCGAAAAGACATGGGAGTGAAGTACTCAG 173
                      ****                         *******************************

consensus_5494#0      AAATACTTGTGGAGTATTACTGGATCCTTTTAAATTGTTTTCATCAGTTAGGTTTGAATC 215
consensus_5494#1      AAATACTTGTGGAGTATTACTGGATCCTTTTAAATTGTTTTCATCAGTTAGGTTTGAATT 233
                      *********************************************************** 

consensus_5494#0      CGAAAAATCAACCGGAACATCAACTTTCGGCTGACTCCTAATAAAGCTACTTGGTGTAAC 275
consensus_5494#1      CGAAAAATCAACCGGAACATCAACTTTCGGCTGACTCCTAATAAAGCTACTTGGTGTAAC 293
                      ************************************************************

consensus_5494#0      GTTCTGTTGTTCAGCTATACACTTTAGAGAGTCCTCATCCGAATGAATAGCTGAGGAATC 335
consensus_5494#1      GTTCTGTTGTTCAGCTATACACTTTAGAGAGTCCTC------------------------ 329
                      ************************************                        

consensus_5494#0      TTCATTCGACTTTCGAGTTGAAGCCATTTCTTCATTGTTCACTTTTTACAAAACCCATGT 395
consensus_5494#1      ------------------------------------------------------------
                                                                                  

consensus_5494#0      GGTCGACTGGCTGCAAGCACAGTAGAGTTGATGGTAACCGCAGTGAAGAAGCAAAGCTAA 455
consensus_5494#1      ------------------------------------------------------------
                                                                                  

consensus_5494#0      ATCCCTTTATGCTATATGTGTACACTTAAGAAGATA 491
consensus_5494#1      ------------------------------------