These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5500#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [ATATAATAAAATCTATATTGTGTGCGTCCTGCGAACAACTTATTGTCATTTACCTATGGGATTGGAATATGGGGAATAGTTTCAAATTAACTCATTACCAGATAGTTGGTTGTGAGATACTCTAGTCGTGATGTCTAATCATACTGTGGTGTGTGCTACTTATATCAACATAAGTAGTATATATCGTGAGTCAGGAGTAGAATATCTAGCAGTAAAATATTGAGAAGATCGAGGAGAGAAGAACAGAAATAGAAAACAATTGGTATGGAGATGAAGGGACAGTGAAGTCTGAGATGACTGGTTGACATTTGCAAAGGAACAGTCAAGTTCGATTGATATTTTGCAAACTAAGTATTTACTGTTTGTTTCTCAGATTTTACTAGGATGTTTTGTAAGTTTGTGTTGAAATACATTCGGTTGTCTCCACCGGTGTTCGTGTTCACTACAGTACTGCTCAGTTTT] [+] EMBL CD156251 [ATATAATAAAATCTATATTGTGTGCGTCCTGCGAACAACTTATTGTCATTTACCTATGGGATTGGAATATGGGGAATAGTTTCAAATTAACTCATTACCAGATAGTTGGTTGTGAGATACTCTAGTCGTGATGTCTAATCATACTGTGGTGTGTGCTACTTATATCAACATAAGTAGTATATATCGTGAGTCAGGAGTAGAATATCTAGCAGTAAAATATTGAGAAGATCGAGGAGAGAAGAACAGAAATAGAAAACAATTGGTATGGAGATGAAGGGACAGTGAAGTCTGAGATGACTGGTTGACATTTGCAAAGGAACAGTCAAGTTCGATTGATATTTTGCAAACTAAGTATTTACTGTTTGTTTCTCAGATTTTACTAGGATGTTTTGTAAGTTTGTGTTGAAATACATTCGGTTGTCTCCACCGGTGTTCGTGTTCACTACAGTACTGCTCAGTTTT] consensusID : consensus_5500#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 314 fasta sequence [GTCCGGCAACAGCAGATCGAGAAGAAAGGAACGGGAACAGAAAGAAATTGGTATGGAGGTGAAGGAACAGTGAAGTCTGAGACGACTGATTGACATTTGCAAAGGAACAGTCAAGTTTTGGACAACTGACTGACATTTTGCAAGCTGTGTTTACTGCATGATTCTCAGATTTTACTGAGATTCTGAAATTTTTTGTTCTCATTCACTACACTATAGTTTTAAATAATGTACTTTGACCTAAATCTGGACAATCTTCGTTTGAAAATTAAAAGATATGAACTTGGAGTTGCTTGTGATATAAAACAAAATCTTTA] [-] EMBL CD123419 [GTCCGGCAACAGCAGATCGAGAAGAAAGGAACGGGAACAGAAAGAAATTGGTATGGAGGTGAAGGAACAGTGAAGTCTGAGACGACTGATTGACATTTGCAAAGGAACAGTCAAGTTTTGGACAACTGACTGACATTTTGCAAGCTGTGTTTACTGCATGATTCTCAGATTTTACTGAGATTCTGAAATTTTTTGTTCTCATTCACTACACTATAGTTTTAAATAATGTACTTTGACCTAAATCTGGACAATCTTCGTTTGAAAATTAAAAGATATGAACTTGGAGTTGCTTGTGATATAAAACAAAATCTTTA] [-] EMBL CD123394 [GTCCGGCAACAGCAGATCGAGAAGAAAAGAACGGGAACAGAAAGAAATTGGTATGGAGGTGAAGGAACAGTGAAGTCTGAGACGACTGATTGACATTTGCAAAGGAACAGTCAAGTTTTGGACAACTGATTGACATTTTGCAAGCTGTGTTTACTGCATGATTCTCAGATTTTACTGAGATTCTGAAATTTTTTGTTCTCATTCACTACACTATAGTTTTAAATAATGTACTTTGACCTAAATCTGGACAATCTTCGTTTGAAAATTAAAAGATATGAACTTGGAGTTGCTTGTGATATAAAACAAAATCTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5500#0 ATATAATAAAATCTATATTGTGTGCGTCCTGCGAACAACTTATTGTCATTTACCTATGGG 60 consensus_5500#1 ------------------------------------------------------------ consensus_5500#0 ATTGGAATATGGGGAATAGTTTCAAATTAACTCATTACCAGATAGTTGGTTGTGAGATAC 120 consensus_5500#1 ------------------------------------------------------------ consensus_5500#0 TCTAGTCGTGATGTCTAATCATACTGTGGTGTGTGCTACTTATATCAACATAAGTAGTAT 180 consensus_5500#1 ------------------------------------------------------------ consensus_5500#0 ATATCGTGAGTCAGGAGTAGAATATCTAGCAGTAAAATATTGAGAAGATCGAGGAGAGAA 240 consensus_5500#1 -------------------------------GTCCGGCAAC-AGCAGATCGAGAAGAAAG 28 ** * ** ******** *** * consensus_5500#0 GAACAGAAATAGAAAACAATTGGTATGGAGATGAAGGGACAGTGAAGTCTGAGATGACTG 300 consensus_5500#1 GAACGGGAACAGAAAGAAATTGGTATGGAGGTGAAGGAACAGTGAAGTCTGAGACGACTG 88 **** * ** ***** ************* ****** **************** ***** consensus_5500#0 GTTGACATTTGCAAAGGAACAGTCAAGTTC---------GATTGATATTTTGCAAACTAA 351 consensus_5500#1 ATTGACATTTGCAAAGGAACAGTCAAGTTTTGGACAACTGACTGACATTTTGCAAGCT-- 146 **************************** ** *** ********* ** consensus_5500#0 GTATTTACTGTTTGTTTCTCAGATTTTACTAGGATGTTTTGTAAGTTTGTGTTGAAATAC 411 consensus_5500#1 GTGTTTACTGCATGATTCTCAGATTTTACTGAGA--TTCTGAAATTTTTTGTTCTCATTC 204 ** ******* ** *************** ** ** ** ** *** **** ** * consensus_5500#0 ATTCGGTTGTCTCCACCGGTGTTCGTGTTCACTACAGTACTGCTCAGTTTT--------- 462 consensus_5500#1 ACTACACTATAGTTTTAAATAATGTACTTTGACCTAAATCTGGACAATCTTCGTTTGAAA 264 * * * * * * ** * *** ** * ** consensus_5500#0 -------------------------------------------------- consensus_5500#1 ATTAAAAGATATGAACTTGGAGTTGCTTGTGATATAAAACAAAATCTTTA 314 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||