cluster # 5505

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Schistosoma mansoni
cluster # 5505 cluster # 5505 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5505#0 length = 498 sequences # 2

consensus_5505#1 length = 400 sequences # 1

consensusID : consensus_5505#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 498
fasta sequence

                              [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTACATTGAACAAAATCATATTGCTAATTATTATGAAGATAATATCTCACACTCCTTGAAACATAACAAGTAATAAAGGCGAACTACTGCGACTACTTGAAGACAGAATATAACGAAAAAATGTTACATCAAATATAATTTCAATTTTGAAATATATAGAAGGCCATTCGTTTTATTCCAGAATTCTGAAAGAATATATGGCCATATAGAATTCAACTTACACAAACTAAACTCGGAATAAACCGAGCAATATCAGAGTTAGGTATATATAAACGTCACAAGATCAATTGGACACATCATTAGGTTCAGAGTTAGACTTTGAAGTGATTTCTCCAGATGAGCATCCAAAAAGTTCTAGTCTACGTTTACGAACTTCCGTAAATTCCGAATCTTCAGATGCAAGGGGACATTTACCATCGGACTCTAACTGGGTTTTACATCA]

[+] EMBL AI975689             [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTACATTGAACAAAATCATATTGCTAATTATTATGAAGATAATATCTCACACTCCTTGAAACATAACAAGTAATAAAGGCGAACTACTGCGACTACTTGAAGACAGAATATAACGAAAAAATGTTACATCAAATATAATTTCAATTTTGAAATATATAGAAGGCCATTCGTTTTATTCCAGAATTCTGAAAGAATATATGGCCATATAGAATTCAACTTACACAAACTAAACTCGGAATAAACCGAGCAATATCAGAGTTAGGTATATATAAACGTCACAAGATCAATTGGACACATCATTAGGTTCAGAGTTAGACTTTGAAGTGATTTCTCCAGATGAGCATCCAAAAAGTTCTAGTCTACGTTTACGAACTTCCGTAAATTCCGAATCTTCAGATGCAAGGGGACATTTACCATCGGACTCTAACTGGGTTTTACATCA]
[-] EMBL SM680                [                                                                                                                                                                         CGAAAAAATGTTACATCAAATATAATTTCAATTTTGAAATATATAGAAGGCCATTCGTTTTATTCCAGAATTCTGAAAGAATATATGGCCATATAGAATTCAACTTACACAAACTAAACTCGGAATAAACCGAGCAATATCAGAGTTAGGTATATATAAACGTCACAAGATCAATTGGACACATCATTAGGTTCAGAGTTAGACTTTGAAGTGATTTCTCCAGATGAGCATCCAAAAAGTTCTAGTCTACGTTTACGAACTTCCtcgt                                                             ]




>consensus_5505#0
TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTAC
ATTGAACAAAATCATATTGCTAATTATTATGAAGATAATATCTCACACTCCTTGAAACAT
AACAAGTAATAAAGGCGAACTACTGCGACTACTTGAAGACAGAATATAACGAAAAAATGT
TACATCAAATATAATTTCAATTTTGAAATATATAGAAGGCCATTCGTTTTATTCCAGAAT
TCTGAAAGAATATATGGCCATATAGAATTCAACTTACACAAACTAAACTCGGAATAAACC
GAGCAATATCAGAGTTAGGTATATATAAACGTCACAAGATCAATTGGACACATCATTAGG
TTCAGAGTTAGACTTTGAAGTGATTTCTCCAGATGAGCATCCAAAAAGTTCTAGTCTACG
TTTACGAACTTCCGTAAATTCCGAATCTTCAGATGCAAGGGGACATTTACCATCGGACTC
TAACTGGGTTTTACATCA

consensusID : consensus_5505#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 400
fasta sequence

                              [TTTTTTTTTTTTTTTTCAATGTTACATCAAATATAATTTCAACTTTGAAATATATAGAAGGCCATTCGTTTTATTCAAGAATTCTGAAAGAATATATGGCCATATAGAATTCAACTTACACAAACTAAACTCGGAATAAACCGAGCAATATCAGAGTTAGGTATATATAAACGTCACAAGATCAATTGGACACATCATTAGGTTCAGAGTTAGACTTTGAAGTGATTTCTCCAGATGAGCATCCGAAAAGTTCTAGTCTACGTTTACGAACTTCCGTAAATTCCGAATCTTCAGATGCAAGGGGACATTTACCATCGGACTCTAACTGAGGTTTTACATCATTAATTAGGGCTTCCTTTTCGTCATTATTTGATTCCACATTGTCGGTGTTGAAGGGAGT]

[+] EMBL AI395832             [TTTTTTTTTTTTTTTTCAATGTTACATCAAATATAATTTCAACTTTGAAATATATAGAAGGCCATTCGTTTTATTCAAGAATTCTGAAAGAATATATGGCCATATAGAATTCAACTTACACAAACTAAACTCGGAATAAACCGAGCAATATCAGAGTTAGGTATATATAAACGTCACAAGATCAATTGGACACATCATTAGGTTCAGAGTTAGACTTTGAAGTGATTTCTCCAGATGAGCATCCGAAAAGTTCTAGTCTACGTTTACGAACTTCCGTAAATTCCGAATCTTCAGATGCAAGGGGACATTTACCATCGGACTCTAACTGAGGTTTTACATCATTAATTAGGGCTTCCTTTTCGTCATTATTTGATTCCACATTGTCGGTGTTGAAGGGAGT]




>consensus_5505#1
TTTTTTTTTTTTTTTTCAATGTTACATCAAATATAATTTCAACTTTGAAATATATAGAAG
GCCATTCGTTTTATTCAAGAATTCTGAAAGAATATATGGCCATATAGAATTCAACTTACA
CAAACTAAACTCGGAATAAACCGAGCAATATCAGAGTTAGGTATATATAAACGTCACAAG
ATCAATTGGACACATCATTAGGTTCAGAGTTAGACTTTGAAGTGATTTCTCCAGATGAGC
ATCCGAAAAGTTCTAGTCTACGTTTACGAACTTCCGTAAATTCCGAATCTTCAGATGCAA
GGGGACATTTACCATCGGACTCTAACTGAGGTTTTACATCATTAATTAGGGCTTCCTTTT
CGTCATTATTTGATTCCACATTGTCGGTGTTGAAGGGAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5505#0      TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTAC 60
consensus_5505#1      ------------------------------------------------------------
                                                                                  

consensus_5505#0      ATTGAACAAAATCATATTGCTAATTATTATGAAGATAATATCTCACACTCCTTGAAACAT 120
consensus_5505#1      ------------------------------------------------------------
                                                                                  

consensus_5505#0      AACAAGTAATAAAGGCGAACTACTGCGACTACTTGAAGACAGAATATAACGAAAAAATGT 180
consensus_5505#1      --------------------------------------TTTTTTTTTTTTTTTTCAATGT 22
                                                                  * *        *****

consensus_5505#0      TACATCAAATATAATTTCAATTTTGAAATATATAGAAGGCCATTCGTTTTATTCCAGAAT 240
consensus_5505#1      TACATCAAATATAATTTCAACTTTGAAATATATAGAAGGCCATTCGTTTTATTCAAGAAT 82
                      ******************** ********************************* *****

consensus_5505#0      TCTGAAAGAATATATGGCCATATAGAATTCAACTTACACAAACTAAACTCGGAATAAACC 300
consensus_5505#1      TCTGAAAGAATATATGGCCATATAGAATTCAACTTACACAAACTAAACTCGGAATAAACC 142
                      ************************************************************

consensus_5505#0      GAGCAATATCAGAGTTAGGTATATATAAACGTCACAAGATCAATTGGACACATCATTAGG 360
consensus_5505#1      GAGCAATATCAGAGTTAGGTATATATAAACGTCACAAGATCAATTGGACACATCATTAGG 202
                      ************************************************************

consensus_5505#0      TTCAGAGTTAGACTTTGAAGTGATTTCTCCAGATGAGCATCCAAAAAGTTCTAGTCTACG 420
consensus_5505#1      TTCAGAGTTAGACTTTGAAGTGATTTCTCCAGATGAGCATCCGAAAAGTTCTAGTCTACG 262
                      ****************************************** *****************

consensus_5505#0      TTTACGAACTTCCGTAAATTCCGAATCTTCAGATGCAAGGGGACATTTACCATCGGACTC 480
consensus_5505#1      TTTACGAACTTCCGTAAATTCCGAATCTTCAGATGCAAGGGGACATTTACCATCGGACTC 322
                      ************************************************************

consensus_5505#0      TAACTG-GGTTTTACATCA----------------------------------------- 498
consensus_5505#1      TAACTGAGGTTTTACATCATTAATTAGGGCTTCCTTTTCGTCATTATTTGATTCCACATT 382
                      ****** ************                                         

consensus_5505#0      ------------------
consensus_5505#1      GTCGGTGTTGAAGGGAGT 400