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Schistosoma mansoni
cluster # 5510 cluster # 5510       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5510#0 length = 1028 sequences # 2  
consensus_5510#1 length = 333 sequences # 1  

consensusID : consensus_5510#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1028
fasta sequence
                              [ATTACGTTGATAAAATAGAGATAGATGTGAGAAGAATGAATAAGTATTGGATAGAACTAGAAAGGAAGACACAGGACAGCGTTGGTTGGAGAATGCTGGTCGGCGGCCCATGTATGCTCCATTGGTGGTAACAGGCGTAAGTAATTAAGTAAGTAGGTAAGGAAGTAAATAAGTGGGATTAGTTTATCCCCTTATTAAATTTCCATCCACCTATTTATTTCCTGATGGATTGTTTTATAGGTATCAGGTTTTGTGCATCATATCTAGATGCGAATGTTTCATCATTTCCTTATATTTTTGTTATTGTTTTTAAGGATTTCAATACTCGTATAGTATCGTTTTAAGTTTTAGGACAGATGGGTATCCGAGGCTTGTGGACGTATATTCAAAGTAACAGTGACAACTTATCCCGGTATGAATTGCATAACCAGCCTTTAGTTATTGATGCCGAGAACTTTGCTGCTTTCTGTTATCGTCGAGCTGCTTTTCGATGTGAATATGGTGGAGAGTATTTGGCATTTAAAGGATATGTGCATTCATTCTTAAAACAGTTTAGTATCTGTCGTGTGGAACCAATTTTCATTTTCGGTGGATGTCATCCTCAGGAGGGATCAAAATTGGATACATTGTTAAAGCGGAACATGGAATACTTTGACAAACTGTCATCAGCTCTTAAATTTGAGTCAACATATAGCGAAAAGTTGAACATCGATATAACTCCACGACTTTGCAGAAATGTTCTTGTGGAAATTCTGAAGGAATCTTCAGTTCCATACATAGCATGTGAACGTGAAGCTGATATCAATGTAGCAGAACTAGCTATTTATCTCCGTTGTCCTGTTACCAGTGGGGATTCTGATTTTTTTATTTATCGACCAAATGATCATAATCAAGTCTACAGTTTTATTCCATTTTCATCTATTTCACTTGATTGTAAGGAGAGATCCCCTCCTTGTTCTATTTGTAAACGTGGTGGTGCTGCATGTTATTTTATATGGTGTACAATTCTTAATAAAACAGGACCGTTT]

[+] EMBL CD079411             [ATTACGTTGATAAAATAGAGATAGATGTGAGAAGAATGAATAAGTATTGGATAGAACTAGAAAGGAAGACACAGGACAGCGTTGGTTGGAGAATGCTGGTCGGCGGCCCATGTATGCTCCATTGGTGGTAACAGGCGTAAGTAATTAAGTAAGTAGGTAAGGAAGTAAATAAGTGGGATTAGTTTATCCCCTTATTAAATTTCCATCCACCTATTTATTTCCTGATGGATTGTTTTATAGGTATCAGGTTTTGTGCATCATATCTAGATGCGAATGTTTCATCATTTCCTTATATTTTTGTTATTGTTTTTAAGGATTTCAATACTCGTATAGTATCGTTTTAAGTTTTAGGACAGATGGGTATCCGAGGCTTGTGGACGTATATTCAAAGTAACAGTGACAACTTATCCCGGTATGAATTGCATAACCAGCCTTTAGTTATTGATGCCGAGAACTTTGCTGCTTTCTGTTATCGTCGAGCTGCTTTTCGATGTGAATATGGTGGAGAGTATTTGGCATTTAAAGGATATGTGCATTCATTCTTAAAACAGTTTAGTATCTGTCGTGTGGAACCAATTTTCATTTTCGGTGGATGTCATCCTCAGGAGGGATCAAAATTGGATACATTGTTAAAGCGGAACATGGAATACTTTGACAAACTGTCATCAGCTCTTAAATTTGAGTCAA                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD073685             [                                                                                                                                                                                                                                                                                                                                                                                                TTCAAAGTAACAGTGACAACTTATCCCGGTATGAATTGCATAACCAGCCTTTAGTTATTGATGCCGAGAACTTTGCTGCTTTCTGTTATCGTCGAGCTGCTTTTCGATGTGAATATGGTGGAGAGTATTTGGCATTTAAAGGATATGTGCATTCATTCTTAAAACAGTTTAGTATCTGTCGTGTGGAACCAATTTTCATTTTCGGTGGATGTCATCCTCAGGAGGGATCAAAATTGGATACATTGTTAAAGCGGAACATGGAATACTTTGACAAACTGTCATCAGCTCTTAAATTTGAGTCAACATATAGCGAAAAGTTGAACATCGATATAACTCCACGACTTTGCAGAAATGTTCTTGTGGAAATTCTGAAGGAATCTTCAGTTCCATACATAGCATGTGAACGTGAAGCTGATATCAATGTAGCAGAACTAGCTATTTATCTCCGTTGTCCTGTTACCAGTGGGGATTCTGATTTTTTTATTTATCGACCAAATGATCATAATCAAGTCTACAGTTTTATTCCATTTTCATCTATTTCACTTGATTGTAAGGAGAGATCCCCTCCTTGTTCTATTTGTAAACGTGGTGGTGCTGCATGTTATTTTATATGGTGTACAATTCTTAATAAAACAGGACCGTTT]


>consensus_5510#0 ATTACGTTGATAAAATAGAGATAGATGTGAGAAGAATGAATAAGTATTGGATAGAACTAG AAAGGAAGACACAGGACAGCGTTGGTTGGAGAATGCTGGTCGGCGGCCCATGTATGCTCC ATTGGTGGTAACAGGCGTAAGTAATTAAGTAAGTAGGTAAGGAAGTAAATAAGTGGGATT AGTTTATCCCCTTATTAAATTTCCATCCACCTATTTATTTCCTGATGGATTGTTTTATAG GTATCAGGTTTTGTGCATCATATCTAGATGCGAATGTTTCATCATTTCCTTATATTTTTG TTATTGTTTTTAAGGATTTCAATACTCGTATAGTATCGTTTTAAGTTTTAGGACAGATGG GTATCCGAGGCTTGTGGACGTATATTCAAAGTAACAGTGACAACTTATCCCGGTATGAAT TGCATAACCAGCCTTTAGTTATTGATGCCGAGAACTTTGCTGCTTTCTGTTATCGTCGAG CTGCTTTTCGATGTGAATATGGTGGAGAGTATTTGGCATTTAAAGGATATGTGCATTCAT TCTTAAAACAGTTTAGTATCTGTCGTGTGGAACCAATTTTCATTTTCGGTGGATGTCATC CTCAGGAGGGATCAAAATTGGATACATTGTTAAAGCGGAACATGGAATACTTTGACAAAC TGTCATCAGCTCTTAAATTTGAGTCAACATATAGCGAAAAGTTGAACATCGATATAACTC CACGACTTTGCAGAAATGTTCTTGTGGAAATTCTGAAGGAATCTTCAGTTCCATACATAG CATGTGAACGTGAAGCTGATATCAATGTAGCAGAACTAGCTATTTATCTCCGTTGTCCTG TTACCAGTGGGGATTCTGATTTTTTTATTTATCGACCAAATGATCATAATCAAGTCTACA GTTTTATTCCATTTTCATCTATTTCACTTGATTGTAAGGAGAGATCCCCTCCTTGTTCTA TTTGTAAACGTGGTGGTGCTGCATGTTATTTTATATGGTGTACAATTCTTAATAAAACAG GACCGTTT



consensusID : consensus_5510#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence
                              [GAGATTTGATGCATGGACAGATGGGTATCCGAGGCTTGTGGACGTATATTCAAAGTAACAGAGACAACTTATCCCGGTATGAATTGCATAACCAGACTTTAGTTATTGATGCCGAGAACTTTGCTGCTTTCTGTTATCGACAAGCTGCTTTTCGATGTGAATATGGTGGAGAGTATTTGGCATTTAAAGGATATGTGCATTCATTCTTAAAACAGTTTAGTATCTGTCGTGAGGAACCAATTCTCATTTTCGGTGGATGTCATCCTCAGGAGGGATCGATATTGGATACATTGGTAAAGCGGAACATGGAATACTTTGACAAACTGTCATCAG]

[+] EMBL AI977448             [GAGATTTGATGCATGGACAGATGGGTATCCGAGGCTTGTGGACGTATATTCAAAGTAACAGAGACAACTTATCCCGGTATGAATTGCATAACCAGACTTTAGTTATTGATGCCGAGAACTTTGCTGCTTTCTGTTATCGACAAGCTGCTTTTCGATGTGAATATGGTGGAGAGTATTTGGCATTTAAAGGATATGTGCATTCATTCTTAAAACAGTTTAGTATCTGTCGTGAGGAACCAATTCTCATTTTCGGTGGATGTCATCCTCAGGAGGGATCGATATTGGATACATTGGTAAAGCGGAACATGGAATACTTTGACAAACTGTCATCAG]


>consensus_5510#1 GAGATTTGATGCATGGACAGATGGGTATCCGAGGCTTGTGGACGTATATTCAAAGTAACA GAGACAACTTATCCCGGTATGAATTGCATAACCAGACTTTAGTTATTGATGCCGAGAACT TTGCTGCTTTCTGTTATCGACAAGCTGCTTTTCGATGTGAATATGGTGGAGAGTATTTGG CATTTAAAGGATATGTGCATTCATTCTTAAAACAGTTTAGTATCTGTCGTGAGGAACCAA TTCTCATTTTCGGTGGATGTCATCCTCAGGAGGGATCGATATTGGATACATTGGTAAAGC GGAACATGGAATACTTTGACAAACTGTCATCAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5510#0      ATTACGTTGATAAAATAGAGATAGATGTGAGAAGAATGAATAAGTATTGGATAGAACTAG 60
consensus_5510#1      ------------------------------------------------------------
                                                                                  

consensus_5510#0      AAAGGAAGACACAGGACAGCGTTGGTTGGAGAATGCTGGTCGGCGGCCCATGTATGCTCC 120
consensus_5510#1      ------------------------------------------------------------
                                                                                  

consensus_5510#0      ATTGGTGGTAACAGGCGTAAGTAATTAAGTAAGTAGGTAAGGAAGTAAATAAGTGGGATT 180
consensus_5510#1      ------------------------------------------------------------
                                                                                  

consensus_5510#0      AGTTTATCCCCTTATTAAATTTCCATCCACCTATTTATTTCCTGATGGATTGTTTTATAG 240
consensus_5510#1      ------------------------------------------------------------
                                                                                  

consensus_5510#0      GTATCAGGTTTTGTGCATCATATCTAGATGCGAATGTTTCATCATTTCCTTATATTTTTG 300
consensus_5510#1      ------------------------------------------------------------
                                                                                  

consensus_5510#0      TTATTGTTTTTAAGGATTTCAATACTCGTATAGTATCGTTTTAAGTTTTAGGACAGATGG 360
consensus_5510#1      ----------------------------------GAGATTTGATGCAT--GGACAGATGG 24
                                                            *** * *  *  **********

consensus_5510#0      GTATCCGAGGCTTGTGGACGTATATTCAAAGTAACAGTGACAACTTATCCCGGTATGAAT 420
consensus_5510#1      GTATCCGAGGCTTGTGGACGTATATTCAAAGTAACAGAGACAACTTATCCCGGTATGAAT 84
                      ************************************* **********************

consensus_5510#0      TGCATAACCAGCCTTTAGTTATTGATGCCGAGAACTTTGCTGCTTTCTGTTATCGTCGAG 480
consensus_5510#1      TGCATAACCAGACTTTAGTTATTGATGCCGAGAACTTTGCTGCTTTCTGTTATCGACAAG 144
                      *********** ******************************************* * **

consensus_5510#0      CTGCTTTTCGATGTGAATATGGTGGAGAGTATTTGGCATTTAAAGGATATGTGCATTCAT 540
consensus_5510#1      CTGCTTTTCGATGTGAATATGGTGGAGAGTATTTGGCATTTAAAGGATATGTGCATTCAT 204
                      ************************************************************

consensus_5510#0      TCTTAAAACAGTTTAGTATCTGTCGTGTGGAACCAATTTTCATTTTCGGTGGATGTCATC 600
consensus_5510#1      TCTTAAAACAGTTTAGTATCTGTCGTGAGGAACCAATTCTCATTTTCGGTGGATGTCATC 264
                      *************************** ********** *********************

consensus_5510#0      CTCAGGAGGGATCAAAATTGGATACATTGTTAAAGCGGAACATGGAATACTTTGACAAAC 660
consensus_5510#1      CTCAGGAGGGATCGATATTGGATACATTGGTAAAGCGGAACATGGAATACTTTGACAAAC 324
                      ************* * ************* ******************************

consensus_5510#0      TGTCATCAGCTCTTAAATTTGAGTCAACATATAGCGAAAAGTTGAACATCGATATAACTC 720
consensus_5510#1      TGTCATCAG--------------------------------------------------- 333
                      *********                                                   

consensus_5510#0      CACGACTTTGCAGAAATGTTCTTGTGGAAATTCTGAAGGAATCTTCAGTTCCATACATAG 780
consensus_5510#1      ------------------------------------------------------------
                                                                                  

consensus_5510#0      CATGTGAACGTGAAGCTGATATCAATGTAGCAGAACTAGCTATTTATCTCCGTTGTCCTG 840
consensus_5510#1      ------------------------------------------------------------
                                                                                  

consensus_5510#0      TTACCAGTGGGGATTCTGATTTTTTTATTTATCGACCAAATGATCATAATCAAGTCTACA 900
consensus_5510#1      ------------------------------------------------------------
                                                                                  

consensus_5510#0      GTTTTATTCCATTTTCATCTATTTCACTTGATTGTAAGGAGAGATCCCCTCCTTGTTCTA 960
consensus_5510#1      ------------------------------------------------------------
                                                                                  

consensus_5510#0      TTTGTAAACGTGGTGGTGCTGCATGTTATTTTATATGGTGTACAATTCTTAATAAAACAG 1020
consensus_5510#1      ------------------------------------------------------------
                                                                                  

consensus_5510#0      GACCGTTT 1028
consensus_5510#1      --------
                              




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)