These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5510#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1028 fasta sequence [ATTACGTTGATAAAATAGAGATAGATGTGAGAAGAATGAATAAGTATTGGATAGAACTAGAAAGGAAGACACAGGACAGCGTTGGTTGGAGAATGCTGGTCGGCGGCCCATGTATGCTCCATTGGTGGTAACAGGCGTAAGTAATTAAGTAAGTAGGTAAGGAAGTAAATAAGTGGGATTAGTTTATCCCCTTATTAAATTTCCATCCACCTATTTATTTCCTGATGGATTGTTTTATAGGTATCAGGTTTTGTGCATCATATCTAGATGCGAATGTTTCATCATTTCCTTATATTTTTGTTATTGTTTTTAAGGATTTCAATACTCGTATAGTATCGTTTTAAGTTTTAGGACAGATGGGTATCCGAGGCTTGTGGACGTATATTCAAAGTAACAGTGACAACTTATCCCGGTATGAATTGCATAACCAGCCTTTAGTTATTGATGCCGAGAACTTTGCTGCTTTCTGTTATCGTCGAGCTGCTTTTCGATGTGAATATGGTGGAGAGTATTTGGCATTTAAAGGATATGTGCATTCATTCTTAAAACAGTTTAGTATCTGTCGTGTGGAACCAATTTTCATTTTCGGTGGATGTCATCCTCAGGAGGGATCAAAATTGGATACATTGTTAAAGCGGAACATGGAATACTTTGACAAACTGTCATCAGCTCTTAAATTTGAGTCAACATATAGCGAAAAGTTGAACATCGATATAACTCCACGACTTTGCAGAAATGTTCTTGTGGAAATTCTGAAGGAATCTTCAGTTCCATACATAGCATGTGAACGTGAAGCTGATATCAATGTAGCAGAACTAGCTATTTATCTCCGTTGTCCTGTTACCAGTGGGGATTCTGATTTTTTTATTTATCGACCAAATGATCATAATCAAGTCTACAGTTTTATTCCATTTTCATCTATTTCACTTGATTGTAAGGAGAGATCCCCTCCTTGTTCTATTTGTAAACGTGGTGGTGCTGCATGTTATTTTATATGGTGTACAATTCTTAATAAAACAGGACCGTTT] [+] EMBL CD079411 [ATTACGTTGATAAAATAGAGATAGATGTGAGAAGAATGAATAAGTATTGGATAGAACTAGAAAGGAAGACACAGGACAGCGTTGGTTGGAGAATGCTGGTCGGCGGCCCATGTATGCTCCATTGGTGGTAACAGGCGTAAGTAATTAAGTAAGTAGGTAAGGAAGTAAATAAGTGGGATTAGTTTATCCCCTTATTAAATTTCCATCCACCTATTTATTTCCTGATGGATTGTTTTATAGGTATCAGGTTTTGTGCATCATATCTAGATGCGAATGTTTCATCATTTCCTTATATTTTTGTTATTGTTTTTAAGGATTTCAATACTCGTATAGTATCGTTTTAAGTTTTAGGACAGATGGGTATCCGAGGCTTGTGGACGTATATTCAAAGTAACAGTGACAACTTATCCCGGTATGAATTGCATAACCAGCCTTTAGTTATTGATGCCGAGAACTTTGCTGCTTTCTGTTATCGTCGAGCTGCTTTTCGATGTGAATATGGTGGAGAGTATTTGGCATTTAAAGGATATGTGCATTCATTCTTAAAACAGTTTAGTATCTGTCGTGTGGAACCAATTTTCATTTTCGGTGGATGTCATCCTCAGGAGGGATCAAAATTGGATACATTGTTAAAGCGGAACATGGAATACTTTGACAAACTGTCATCAGCTCTTAAATTTGAGTCAA ] [-] EMBL CD073685 [ TTCAAAGTAACAGTGACAACTTATCCCGGTATGAATTGCATAACCAGCCTTTAGTTATTGATGCCGAGAACTTTGCTGCTTTCTGTTATCGTCGAGCTGCTTTTCGATGTGAATATGGTGGAGAGTATTTGGCATTTAAAGGATATGTGCATTCATTCTTAAAACAGTTTAGTATCTGTCGTGTGGAACCAATTTTCATTTTCGGTGGATGTCATCCTCAGGAGGGATCAAAATTGGATACATTGTTAAAGCGGAACATGGAATACTTTGACAAACTGTCATCAGCTCTTAAATTTGAGTCAACATATAGCGAAAAGTTGAACATCGATATAACTCCACGACTTTGCAGAAATGTTCTTGTGGAAATTCTGAAGGAATCTTCAGTTCCATACATAGCATGTGAACGTGAAGCTGATATCAATGTAGCAGAACTAGCTATTTATCTCCGTTGTCCTGTTACCAGTGGGGATTCTGATTTTTTTATTTATCGACCAAATGATCATAATCAAGTCTACAGTTTTATTCCATTTTCATCTATTTCACTTGATTGTAAGGAGAGATCCCCTCCTTGTTCTATTTGTAAACGTGGTGGTGCTGCATGTTATTTTATATGGTGTACAATTCTTAATAAAACAGGACCGTTT] consensusID : consensus_5510#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence [GAGATTTGATGCATGGACAGATGGGTATCCGAGGCTTGTGGACGTATATTCAAAGTAACAGAGACAACTTATCCCGGTATGAATTGCATAACCAGACTTTAGTTATTGATGCCGAGAACTTTGCTGCTTTCTGTTATCGACAAGCTGCTTTTCGATGTGAATATGGTGGAGAGTATTTGGCATTTAAAGGATATGTGCATTCATTCTTAAAACAGTTTAGTATCTGTCGTGAGGAACCAATTCTCATTTTCGGTGGATGTCATCCTCAGGAGGGATCGATATTGGATACATTGGTAAAGCGGAACATGGAATACTTTGACAAACTGTCATCAG] [+] EMBL AI977448 [GAGATTTGATGCATGGACAGATGGGTATCCGAGGCTTGTGGACGTATATTCAAAGTAACAGAGACAACTTATCCCGGTATGAATTGCATAACCAGACTTTAGTTATTGATGCCGAGAACTTTGCTGCTTTCTGTTATCGACAAGCTGCTTTTCGATGTGAATATGGTGGAGAGTATTTGGCATTTAAAGGATATGTGCATTCATTCTTAAAACAGTTTAGTATCTGTCGTGAGGAACCAATTCTCATTTTCGGTGGATGTCATCCTCAGGAGGGATCGATATTGGATACATTGGTAAAGCGGAACATGGAATACTTTGACAAACTGTCATCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5510#0 ATTACGTTGATAAAATAGAGATAGATGTGAGAAGAATGAATAAGTATTGGATAGAACTAG 60 consensus_5510#1 ------------------------------------------------------------ consensus_5510#0 AAAGGAAGACACAGGACAGCGTTGGTTGGAGAATGCTGGTCGGCGGCCCATGTATGCTCC 120 consensus_5510#1 ------------------------------------------------------------ consensus_5510#0 ATTGGTGGTAACAGGCGTAAGTAATTAAGTAAGTAGGTAAGGAAGTAAATAAGTGGGATT 180 consensus_5510#1 ------------------------------------------------------------ consensus_5510#0 AGTTTATCCCCTTATTAAATTTCCATCCACCTATTTATTTCCTGATGGATTGTTTTATAG 240 consensus_5510#1 ------------------------------------------------------------ consensus_5510#0 GTATCAGGTTTTGTGCATCATATCTAGATGCGAATGTTTCATCATTTCCTTATATTTTTG 300 consensus_5510#1 ------------------------------------------------------------ consensus_5510#0 TTATTGTTTTTAAGGATTTCAATACTCGTATAGTATCGTTTTAAGTTTTAGGACAGATGG 360 consensus_5510#1 ----------------------------------GAGATTTGATGCAT--GGACAGATGG 24 *** * * * ********** consensus_5510#0 GTATCCGAGGCTTGTGGACGTATATTCAAAGTAACAGTGACAACTTATCCCGGTATGAAT 420 consensus_5510#1 GTATCCGAGGCTTGTGGACGTATATTCAAAGTAACAGAGACAACTTATCCCGGTATGAAT 84 ************************************* ********************** consensus_5510#0 TGCATAACCAGCCTTTAGTTATTGATGCCGAGAACTTTGCTGCTTTCTGTTATCGTCGAG 480 consensus_5510#1 TGCATAACCAGACTTTAGTTATTGATGCCGAGAACTTTGCTGCTTTCTGTTATCGACAAG 144 *********** ******************************************* * ** consensus_5510#0 CTGCTTTTCGATGTGAATATGGTGGAGAGTATTTGGCATTTAAAGGATATGTGCATTCAT 540 consensus_5510#1 CTGCTTTTCGATGTGAATATGGTGGAGAGTATTTGGCATTTAAAGGATATGTGCATTCAT 204 ************************************************************ consensus_5510#0 TCTTAAAACAGTTTAGTATCTGTCGTGTGGAACCAATTTTCATTTTCGGTGGATGTCATC 600 consensus_5510#1 TCTTAAAACAGTTTAGTATCTGTCGTGAGGAACCAATTCTCATTTTCGGTGGATGTCATC 264 *************************** ********** ********************* consensus_5510#0 CTCAGGAGGGATCAAAATTGGATACATTGTTAAAGCGGAACATGGAATACTTTGACAAAC 660 consensus_5510#1 CTCAGGAGGGATCGATATTGGATACATTGGTAAAGCGGAACATGGAATACTTTGACAAAC 324 ************* * ************* ****************************** consensus_5510#0 TGTCATCAGCTCTTAAATTTGAGTCAACATATAGCGAAAAGTTGAACATCGATATAACTC 720 consensus_5510#1 TGTCATCAG--------------------------------------------------- 333 ********* consensus_5510#0 CACGACTTTGCAGAAATGTTCTTGTGGAAATTCTGAAGGAATCTTCAGTTCCATACATAG 780 consensus_5510#1 ------------------------------------------------------------ consensus_5510#0 CATGTGAACGTGAAGCTGATATCAATGTAGCAGAACTAGCTATTTATCTCCGTTGTCCTG 840 consensus_5510#1 ------------------------------------------------------------ consensus_5510#0 TTACCAGTGGGGATTCTGATTTTTTTATTTATCGACCAAATGATCATAATCAAGTCTACA 900 consensus_5510#1 ------------------------------------------------------------ consensus_5510#0 GTTTTATTCCATTTTCATCTATTTCACTTGATTGTAAGGAGAGATCCCCTCCTTGTTCTA 960 consensus_5510#1 ------------------------------------------------------------ consensus_5510#0 TTTGTAAACGTGGTGGTGCTGCATGTTATTTTATATGGTGTACAATTCTTAATAAAACAG 1020 consensus_5510#1 ------------------------------------------------------------ consensus_5510#0 GACCGTTT 1028 consensus_5510#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||