These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5515#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 594 fasta sequence [AAATGGCTTGGTGGACGTTATTGGAAAAGTCCAACATCTCTTGTTTGTCGAAATTTTCGTCACATACGATTAGTGTGCCATCTGTAGATATTTTCTCTGCTTGACGAATGTTTTCTCTTCTGACCATGCTGATTAGCTTCTATTTCTGACGATGGAACTGCTGTAAAAATACGTTGACAGATGCTGCATGATACAGAAAGAATACAGGGGACATCTAAACAATTCTTATTGTTTGAAATTGGCATAAATGGTGAATTGCAACGAGATGAAGTAATCCAATGATTCGTAATTTTATCTAATGAATGAAAATATTGTCGGCAATCAGGACATACTAGTGGTTCTTGAATTTTTAAAACCTTTACAATCAACACCTTCCCGTAAGTAAAAAGAAATTGGTTTTTAGCATGTTGTAAACAGTGGTGATATGCACACATAATCTTATCCAAGAATGGTAAACTACAAGTAGGACAGCATACTACTGTATCACCGACACGCCAACCATAGGTTCTATCTGAACTATTAGAGATGACACGTGGCTTTTGTAGCTCACTCGACATGTCATTGCAATCATTTGTATAATAGCAAGGTGAATAT] [+] EMBL CD188096 [AAATGGCTTGGTGGACGTTATTGGAAAAGTCCAACATCTCTTGTTTGTCGAAATTTTCGTCACATACGATTAGTGTGCCATCTGTAGATATTTTCTCTGCTTGACGAATGTTTTCTCTTCTGACCATGCTGATTAGCTTCTATTTCTGACGATGGAACTGCTGTAAAAATACGTTGACAGATGCTGCATGATACAGAAAGAATACAGGGGACATCTAAACAATTCTTATTGTTTGAAATTGGCATAAATGGTGAATTGCAACGAGATGAAGTAATCCAATGATTCGTAATTTTATCTAATGAATGAAAATATTGTCGGCAATCAGGACATACTA ] [+] EMBL CD198515 [ AACGAGATGAAGTAATCCAATGATTCGTAATTTTATCTAATGAATGAAAATATTGTCGGCAATCAGGACATACTAGTGGTTCTTGAATTTTTAAAACCTTTACAATCAACACCTTCCCGTAAGTAAAAAGAAATTGGTTTTTAGCATGTTGTAAACAGTGGTGATATGCACACATAATCTTATCCAAGAATGGTAAACTACAAGTAGGACAGCATACTACTGTATCACCGACACGCCAACCATAGGTTCTATCTGAACTATTAGAGATGACACGTGGCTTTTGTAGCTCACTCGACATGTCATTGCAATCATTTGTATAATAGCAAGGTGAATAT] consensusID : consensus_5515#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence [TTAATTTTACTGTTAATGAAAGATCCGGATAGGAGCAATATAAATGCTAATTTTGAAATAAGAAATTACTTGGAGTGGGTATAAAAAAGAATCCTATTTATGAGACATGGAGAACAGCGTCGAAAAATAAGTCTCTAAAGCTTCTCTGAGCCTGTTTAAGTAAATGTGATTTCCATTCATGGTTTTCAAGATATGAAATAAGACGTTTACATTCGCTGAGGCTAAAATGTGATCTGTTTGAATTATTTGTACTAGTGATGGGAGGAAGACAGTTAACAGATTTCGGGACACTTATAATTCGTATTTTCAAGCTACACAGAGGAAATCTACCCTGATTTACATGTTCAAAAGCATGACGAACACAAAAATGACCGAAATCTTTTGCCCAAGAAGCTGGTGACCTGTAGATATTTTCTCTGCTTGACGAATGTTTTCTCTTCTGACCATGCTGATTAGCTTCTATTTCTGACGATGGAACTGCTGTAAAAATACGTTGACAGATGCTGCATGATACAGAAAGAATACAGAGGACATCTAAACAATTCTTATTGTTTGAAA] [+] EMBL CD077268 [TTAATTTTACTGTTAATGAAAGATCCGGATAGGAGCAATATAAATGCTAATTTTGAAATAAGAAATTACTTGGAGTGGGTATAAAAAAGAATCCTATTTATGAGACATGGAGAACAGCGTCGAAAAATAAGTCTCTAAAGCTTCTCTGAGCCTGTTTAAGTAAATGTGATTTCCATTCATGGTTTTCAAGATATGAAATAAGACGTTTACATTCGCTGAGGCTAAAATGTGATCTGTTTGAATTATTTGTACTAGTGATGGGAGGAAGACAGTTAACAGATTTCGGGACACTTATAATTCGTATTTTCAAGCTACACAGAGGAAATCTACCCTGATTTACATGTTCAAAAGCATGACGAACACAAAAATGACCGAAATCTTTTGCCCAAGAAGCTGGTGACCTGTAGATATTTTCTCTGCTTGACGAATGTTTTCTCTTCTGACCATGCTGATTAGCTTCTATTTCTGACGATGGAACTGCTGTAAAAATACGTTGACAGATGCTGCATGATACAGAAAGAATACAGAGGACATCTAAACAATTCTTATTGTTTGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5515#0 AAATGGCTTGGTGGACGTTATTGGAAAAGTCCAACATCTCTTGTTTGTCGAAATTTTCGT 60 consensus_5515#1 ----------------------------------------TTAATT-TTACTGTTAATGA 19 ** ** * ** * consensus_5515#0 CACATACGATTAGTGTGCCATCTGTAGATATTTTCTCTGCTTGACGAATGTTTTCTCTTC 120 consensus_5515#1 AAGATCCGGATAG-GAGCAAT--ATAAATGCTAATTTTGAAATAAGAA-ATTACTTGGAG 75 * ** ** *** * ** ** ** ** * * ** * *** ** * consensus_5515#0 TGACCATGCTGATTAGCTTCTATTTCTGACG-ATGGA--ACTGC-TGTAAAAATACGTTG 176 consensus_5515#1 TGGGTATAAAAAAGAA-TCCTATTTATGAGACATGGAGAACAGCGTCGAAAAATAAGTCT 134 ** ** * * * ****** *** ***** ** ** * ******* ** consensus_5515#0 ACAGATGCTGCATGATACAGAAAGAATACAGGGGACATCTAAACA--ATTCTTATTGTTT 234 consensus_5515#1 CTAAAGCTTCTCTGAGCCTGTTTAAGTAAATGTGATTTCCATTCATGGTTTTCAAGATAT 194 * * * *** * * * ** * * ** ** * ** ** * * * * consensus_5515#0 GAAATTGG-CATAAATGGTGAATT--GCAACGAGATGAAGTAATCCAATGATTCGTAATT 291 consensus_5515#1 GAAATAAGACGTTTACATTCGCTGAGGCTAAAATGTGATCTGTTTGAATTATTTGTA--- 251 ***** * * * * * * ** * * *** * * *** *** *** consensus_5515#0 TTATCTAATGAATGAAAATA-TTGTCGGCAATCAGGACATACTAGTGGTTCTTGAATTTT 350 consensus_5515#1 CTAGTGATGGGAGGAAGACAGTTAACAGATTTCGGGACA--CTTATAATTCGT--ATTTT 307 ** * * * *** * * ** * * ** ***** ** * *** * ***** consensus_5515#0 TAAAACCTTTACAATCAACACCTTCCCGTAAGTAAAAAGAAATTGGTTTTTAGCATGTTG 410 consensus_5515#1 CAAG--CTACACAGAGGAAATCTACCCTGATTTACA-------TGTTCAAAAGCATGACG 358 ** ** *** * * ** *** * ** * ** * ****** * consensus_5515#0 TAAACAGTGGTGATATGCACACATAATCTTATCCAAGAA--TGGTAAACTACAAGTAGGA 468 consensus_5515#1 AACACAAAAATGAC-----CGAAATCTTTTGCCCAAGAAGCTGGTGACCTGTAGATATTT 413 * *** *** * * * ** ******* **** * ** * ** consensus_5515#0 ---CAGCAT-ACTACTGTATCACCGACACGCCAACCA---TAGGTTCTATCTGAACTATT 521 consensus_5515#1 TCTCTGCTTGACGAATGTTTTCTCTTCTGACCATGCTGATTAGCTTCTATTTCTGACGAT 473 * ** * ** * *** * * * *** * *** ****** * * consensus_5515#0 AGAGATGACACGTGGCTTTTGTAGCTCACTCGACATGTCATTGCAATCATTTGTATAATA 581 consensus_5515#1 GGAACTGCTGTAAAAATACGTTGACAGATGCTGCATGATACAGAAAGAATACAGAGGACA 533 ** ** * * * * * **** * * ** ** * * * consensus_5515#0 GCAAGGTGAATAT------------ 594 consensus_5515#1 TCTAAACAATTCTTATTGTTTGAAA 558 * * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||