cluster # 5515

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Schistosoma mansoni
cluster # 5515 cluster # 5515 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5515#0 length = 594 sequences # 2

consensus_5515#1 length = 558 sequences # 1

consensusID : consensus_5515#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 594
fasta sequence

                              [AAATGGCTTGGTGGACGTTATTGGAAAAGTCCAACATCTCTTGTTTGTCGAAATTTTCGTCACATACGATTAGTGTGCCATCTGTAGATATTTTCTCTGCTTGACGAATGTTTTCTCTTCTGACCATGCTGATTAGCTTCTATTTCTGACGATGGAACTGCTGTAAAAATACGTTGACAGATGCTGCATGATACAGAAAGAATACAGGGGACATCTAAACAATTCTTATTGTTTGAAATTGGCATAAATGGTGAATTGCAACGAGATGAAGTAATCCAATGATTCGTAATTTTATCTAATGAATGAAAATATTGTCGGCAATCAGGACATACTAGTGGTTCTTGAATTTTTAAAACCTTTACAATCAACACCTTCCCGTAAGTAAAAAGAAATTGGTTTTTAGCATGTTGTAAACAGTGGTGATATGCACACATAATCTTATCCAAGAATGGTAAACTACAAGTAGGACAGCATACTACTGTATCACCGACACGCCAACCATAGGTTCTATCTGAACTATTAGAGATGACACGTGGCTTTTGTAGCTCACTCGACATGTCATTGCAATCATTTGTATAATAGCAAGGTGAATAT]

[+] EMBL CD188096             [AAATGGCTTGGTGGACGTTATTGGAAAAGTCCAACATCTCTTGTTTGTCGAAATTTTCGTCACATACGATTAGTGTGCCATCTGTAGATATTTTCTCTGCTTGACGAATGTTTTCTCTTCTGACCATGCTGATTAGCTTCTATTTCTGACGATGGAACTGCTGTAAAAATACGTTGACAGATGCTGCATGATACAGAAAGAATACAGGGGACATCTAAACAATTCTTATTGTTTGAAATTGGCATAAATGGTGAATTGCAACGAGATGAAGTAATCCAATGATTCGTAATTTTATCTAATGAATGAAAATATTGTCGGCAATCAGGACATACTA                                                                                                                                                                                                                                                                    ]
[+] EMBL CD198515             [                                                                                                                                                                                                                                                                   AACGAGATGAAGTAATCCAATGATTCGTAATTTTATCTAATGAATGAAAATATTGTCGGCAATCAGGACATACTAGTGGTTCTTGAATTTTTAAAACCTTTACAATCAACACCTTCCCGTAAGTAAAAAGAAATTGGTTTTTAGCATGTTGTAAACAGTGGTGATATGCACACATAATCTTATCCAAGAATGGTAAACTACAAGTAGGACAGCATACTACTGTATCACCGACACGCCAACCATAGGTTCTATCTGAACTATTAGAGATGACACGTGGCTTTTGTAGCTCACTCGACATGTCATTGCAATCATTTGTATAATAGCAAGGTGAATAT]




>consensus_5515#0
AAATGGCTTGGTGGACGTTATTGGAAAAGTCCAACATCTCTTGTTTGTCGAAATTTTCGT
CACATACGATTAGTGTGCCATCTGTAGATATTTTCTCTGCTTGACGAATGTTTTCTCTTC
TGACCATGCTGATTAGCTTCTATTTCTGACGATGGAACTGCTGTAAAAATACGTTGACAG
ATGCTGCATGATACAGAAAGAATACAGGGGACATCTAAACAATTCTTATTGTTTGAAATT
GGCATAAATGGTGAATTGCAACGAGATGAAGTAATCCAATGATTCGTAATTTTATCTAAT
GAATGAAAATATTGTCGGCAATCAGGACATACTAGTGGTTCTTGAATTTTTAAAACCTTT
ACAATCAACACCTTCCCGTAAGTAAAAAGAAATTGGTTTTTAGCATGTTGTAAACAGTGG
TGATATGCACACATAATCTTATCCAAGAATGGTAAACTACAAGTAGGACAGCATACTACT
GTATCACCGACACGCCAACCATAGGTTCTATCTGAACTATTAGAGATGACACGTGGCTTT
TGTAGCTCACTCGACATGTCATTGCAATCATTTGTATAATAGCAAGGTGAATAT

consensusID : consensus_5515#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 558
fasta sequence

                              [TTAATTTTACTGTTAATGAAAGATCCGGATAGGAGCAATATAAATGCTAATTTTGAAATAAGAAATTACTTGGAGTGGGTATAAAAAAGAATCCTATTTATGAGACATGGAGAACAGCGTCGAAAAATAAGTCTCTAAAGCTTCTCTGAGCCTGTTTAAGTAAATGTGATTTCCATTCATGGTTTTCAAGATATGAAATAAGACGTTTACATTCGCTGAGGCTAAAATGTGATCTGTTTGAATTATTTGTACTAGTGATGGGAGGAAGACAGTTAACAGATTTCGGGACACTTATAATTCGTATTTTCAAGCTACACAGAGGAAATCTACCCTGATTTACATGTTCAAAAGCATGACGAACACAAAAATGACCGAAATCTTTTGCCCAAGAAGCTGGTGACCTGTAGATATTTTCTCTGCTTGACGAATGTTTTCTCTTCTGACCATGCTGATTAGCTTCTATTTCTGACGATGGAACTGCTGTAAAAATACGTTGACAGATGCTGCATGATACAGAAAGAATACAGAGGACATCTAAACAATTCTTATTGTTTGAAA]

[+] EMBL CD077268             [TTAATTTTACTGTTAATGAAAGATCCGGATAGGAGCAATATAAATGCTAATTTTGAAATAAGAAATTACTTGGAGTGGGTATAAAAAAGAATCCTATTTATGAGACATGGAGAACAGCGTCGAAAAATAAGTCTCTAAAGCTTCTCTGAGCCTGTTTAAGTAAATGTGATTTCCATTCATGGTTTTCAAGATATGAAATAAGACGTTTACATTCGCTGAGGCTAAAATGTGATCTGTTTGAATTATTTGTACTAGTGATGGGAGGAAGACAGTTAACAGATTTCGGGACACTTATAATTCGTATTTTCAAGCTACACAGAGGAAATCTACCCTGATTTACATGTTCAAAAGCATGACGAACACAAAAATGACCGAAATCTTTTGCCCAAGAAGCTGGTGACCTGTAGATATTTTCTCTGCTTGACGAATGTTTTCTCTTCTGACCATGCTGATTAGCTTCTATTTCTGACGATGGAACTGCTGTAAAAATACGTTGACAGATGCTGCATGATACAGAAAGAATACAGAGGACATCTAAACAATTCTTATTGTTTGAAA]




>consensus_5515#1
TTAATTTTACTGTTAATGAAAGATCCGGATAGGAGCAATATAAATGCTAATTTTGAAATA
AGAAATTACTTGGAGTGGGTATAAAAAAGAATCCTATTTATGAGACATGGAGAACAGCGT
CGAAAAATAAGTCTCTAAAGCTTCTCTGAGCCTGTTTAAGTAAATGTGATTTCCATTCAT
GGTTTTCAAGATATGAAATAAGACGTTTACATTCGCTGAGGCTAAAATGTGATCTGTTTG
AATTATTTGTACTAGTGATGGGAGGAAGACAGTTAACAGATTTCGGGACACTTATAATTC
GTATTTTCAAGCTACACAGAGGAAATCTACCCTGATTTACATGTTCAAAAGCATGACGAA
CACAAAAATGACCGAAATCTTTTGCCCAAGAAGCTGGTGACCTGTAGATATTTTCTCTGC
TTGACGAATGTTTTCTCTTCTGACCATGCTGATTAGCTTCTATTTCTGACGATGGAACTG
CTGTAAAAATACGTTGACAGATGCTGCATGATACAGAAAGAATACAGAGGACATCTAAAC
AATTCTTATTGTTTGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5515#0      AAATGGCTTGGTGGACGTTATTGGAAAAGTCCAACATCTCTTGTTTGTCGAAATTTTCGT 60
consensus_5515#1      ----------------------------------------TTAATT-TTACTGTTAATGA 19
                                                              **  ** *     **   * 

consensus_5515#0      CACATACGATTAGTGTGCCATCTGTAGATATTTTCTCTGCTTGACGAATGTTTTCTCTTC 120
consensus_5515#1      AAGATCCGGATAG-GAGCAAT--ATAAATGCTAATTTTGAAATAAGAA-ATTACTTGGAG 75
                       * ** **  *** * ** **   ** **  *   * **    * ***  **   *    

consensus_5515#0      TGACCATGCTGATTAGCTTCTATTTCTGACG-ATGGA--ACTGC-TGTAAAAATACGTTG 176
consensus_5515#1      TGGGTATAAAAAAGAA-TCCTATTTATGAGACATGGAGAACAGCGTCGAAAAATAAGTCT 134
                      **   **    *  *  * ****** ***   *****  ** ** *  ******* **  

consensus_5515#0      ACAGATGCTGCATGATACAGAAAGAATACAGGGGACATCTAAACA--ATTCTTATTGTTT 234
consensus_5515#1      CTAAAGCTTCTCTGAGCCTGTTTAAGTAAATGTGATTTCCATTCATGGTTTTCAAGATAT 194
                        * *   *   ***  * *    * ** * * **  ** *  **   ** * *   * *

consensus_5515#0      GAAATTGG-CATAAATGGTGAATT--GCAACGAGATGAAGTAATCCAATGATTCGTAATT 291
consensus_5515#1      GAAATAAGACGTTTACATTCGCTGAGGCTAAAATGTGATCTGTTTGAATTATTTGTA--- 251
                      *****  * * *  *   *   *   ** *  *  ***  *  *  *** *** ***   

consensus_5515#0      TTATCTAATGAATGAAAATA-TTGTCGGCAATCAGGACATACTAGTGGTTCTTGAATTTT 350
consensus_5515#1      CTAGTGATGGGAGGAAGACAGTTAACAGATTTCGGGACA--CTTATAATTCGT--ATTTT 307
                       **   *  * * *** * * **  * *   ** *****  **  *  *** *  *****

consensus_5515#0      TAAAACCTTTACAATCAACACCTTCCCGTAAGTAAAAAGAAATTGGTTTTTAGCATGTTG 410
consensus_5515#1      CAAG--CTACACAGAGGAAATCTACCCTGATTTACA-------TGTTCAAAAGCATGACG 358
                       **   **  ***    * * ** ***  *  ** *       ** *    ******  *

consensus_5515#0      TAAACAGTGGTGATATGCACACATAATCTTATCCAAGAA--TGGTAAACTACAAGTAGGA 468
consensus_5515#1      AACACAAAAATGAC-----CGAAATCTTTTGCCCAAGAAGCTGGTGACCTGTAGATATTT 413
                       * ***    ***      *  *   * **  *******  **** * **  *  **   

consensus_5515#0      ---CAGCAT-ACTACTGTATCACCGACACGCCAACCA---TAGGTTCTATCTGAACTATT 521
consensus_5515#1      TCTCTGCTTGACGAATGTTTTCTCTTCTGACCATGCTGATTAGCTTCTATTTCTGACGAT 473
                         * ** * ** * *** *   *  *   ***  *    *** ****** *       *

consensus_5515#0      AGAGATGACACGTGGCTTTTGTAGCTCACTCGACATGTCATTGCAATCATTTGTATAATA 581
consensus_5515#1      GGAACTGCTGTAAAAATACGTTGACAGATGCTGCATGATACAGAAAGAATACAGAGGACA 533
                       **  **         *    *  *  *  *  ****  *  * **  **    *  * *

consensus_5515#0      GCAAGGTGAATAT------------ 594
consensus_5515#1      TCTAAACAATTCTTATTGTTTGAAA 558
                       * *    * * *