cluster # 5519

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Schistosoma mansoni
cluster # 5519 cluster # 5519 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5519#0 length = 696 sequences # 2

consensus_5519#1 length = 111 sequences # 1

consensusID : consensus_5519#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 696
fasta sequence

                              [TGGGTTTAAGGATGGGTGAACTTCCAATTTTCACTTGTCAAGCCCATGTATTTACAATTAACCCTCAAACAAAAAAATCATGGATTCCGTCAAGCAGTAAAGCAGTCGATGTTAACTTCTTTTATGATTCCAATAAGCACTGTTATCGAATAATTAGTGTTGAAGATTCTTCTGGTTCAAAAAAGGTTATTATTAATAGTACTTTGACGGAAAAAATGACATTCAAGAAGACTTCACAAAAATTTGGACAATGGGCTGATTCTAAAACTGGTGGAGTCCATGGTTTGGGGTTCAGCTCAGAAGCAGACTTAACCATGTTTGTCAATCAATTTAAACAATGTGTAGATTCAATGAAGACTCAAATTCAACCAGAATCAAATAGTCCATCTGGAATACGTGTACCATCAGAATCGGCAAATTTACCGAAAGACAATTTACCAAGCCCGTTACAAAATGGCCAAATTCATCCACCAATATCCAATAGTTGTAGTAGTATTCCAATTAATCAACCCACTATACCAACACTAACGCCTACATGTTTAACGACTAATATTATTACTTCACATCAAAATATTTCACAAAATTTATCAAATCCATTATCTATACAACATGTGAATTCCTCGTCATTGCCTGTTACACTGACAACACATCATTGACACAACTAATGGACAAATGGAAATGTATTCTAATCAATCT]

[+] EMBL BF936629             [TGGGTTTAAGGATGGGTGAACTTCCAATTTTCACTTGTCAAGCCCATGTATTTACAATTAACCCTCAAACAAAAAAATCATGGATTCCGTCAAGCAGTAAAGCAGTCGATGTTAACTTCTTTTATGATTCCAATAAGCACTGTTATCGAATAATTAGTGTTGAAGATTCTTCTGGTTCAAAAAAGGTTATTATTAATAGTACTTTGACGGAAAAAATGACATTCAAGAAGACTTCACAAAAATTTGGACAATGGGCTGATTCTAAAACTGGTGGAGTCCATGGTTTGGGGTTCAGCTCAGAAGCAGACTTAACCATGTTTGTCAATCAATTTAAACAATGTGTAGATTCAATGAAGACTCAAATTCAACCAGAATCAAATAGTCCATCTGGAATACGTGTACCATCAGAATCGGCAAATTTACCGAAAGACAATTTACCAAGCCCGTTACAAAATGGCCAAATTCATCCACCAATATCCAATAGTTGTAGTAGTATTCCAATTAATCAACCCACTATACCAACACTAACGCCTACATGTTTAACGACTAATATTATTACTTCACATCAAAATATTTCACAAAATTTATCAAATCCATTATCTATACAACATGTGAATTCCTCGTCATTGCCTGTTACACTGACAACACATCATTGACACAACTAATGGACAAATGGAAATGTATTCTAATCAATCT]
[+] EMBL CD169761             [                        CAATTTTCACTTGTCAAGCCCATGTATTTACAATTAACCCTCAAACAAAAAAATCATGGATTCCGTCAAGCAGTAAAGCAGTCGATGTTAACTTCTTTTATGATTCCAATAAGCACTGTTATCGAATAATTAGTGTTGAAGATTCTTCTGGTTCAAAAAAGGTTATTATTAATAGTACTTTGACGAAAAAAATGACATTCAAGAAGACTTCACAAAAATTTGGACAATGGGCTGATTCTAAAACTGGTGGAGTCCATGGTTTGGGGTTCAGCTCAGAA                                                                                                                                                                                                                                                                                                                                                                                                          ]




>consensus_5519#0
TGGGTTTAAGGATGGGTGAACTTCCAATTTTCACTTGTCAAGCCCATGTATTTACAATTA
ACCCTCAAACAAAAAAATCATGGATTCCGTCAAGCAGTAAAGCAGTCGATGTTAACTTCT
TTTATGATTCCAATAAGCACTGTTATCGAATAATTAGTGTTGAAGATTCTTCTGGTTCAA
AAAAGGTTATTATTAATAGTACTTTGACGGAAAAAATGACATTCAAGAAGACTTCACAAA
AATTTGGACAATGGGCTGATTCTAAAACTGGTGGAGTCCATGGTTTGGGGTTCAGCTCAG
AAGCAGACTTAACCATGTTTGTCAATCAATTTAAACAATGTGTAGATTCAATGAAGACTC
AAATTCAACCAGAATCAAATAGTCCATCTGGAATACGTGTACCATCAGAATCGGCAAATT
TACCGAAAGACAATTTACCAAGCCCGTTACAAAATGGCCAAATTCATCCACCAATATCCA
ATAGTTGTAGTAGTATTCCAATTAATCAACCCACTATACCAACACTAACGCCTACATGTT
TAACGACTAATATTATTACTTCACATCAAAATATTTCACAAAATTTATCAAATCCATTAT
CTATACAACATGTGAATTCCTCGTCATTGCCTGTTACACTGACAACACATCATTGACACA
ACTAATGGACAAATGGAAATGTATTCTAATCAATCT

consensusID : consensus_5519#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 111
fasta sequence

                              [ANANNTACATAGACAGTTTACTGATTAGATTACACCTACCAATGAATCATTGATGGTACACGTATTCCAGATGGACTATTTGATTCTGGTTGAATTTGAGTCTTCATTGAA]

[+] EMBL CD128857             [ANANNTACATAGACAGTTTACTGATTAGATTACACCTACCAATGAATCATTGATGGTACACGTATTCCAGATGGACTATTTGATTCTGGTTGAATTTGAGTCTTCATTGAA]




>consensus_5519#1
ANANNTACATAGACAGTTTACTGATTAGATTACACCTACCAATGAATCATTGATGGTACA
CGTATTCCAGATGGACTATTTGATTCTGGTTGAATTTGAGTCTTCATTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5519#0      TGGGTTTAAGGATGGGTGAACTTCCAATTTTCACTTGTCAAGCCCATGTATTTACAATTA 60
consensus_5519#1      ------------------------------------------------------------
                                                                                  

consensus_5519#0      ACCCTCAAACAAAAAAATCATGGATTCCGTCAAGCAGTAAAGCAGTCGATGTTAACTTCT 120
consensus_5519#1      ------------------------------------------------------------
                                                                                  

consensus_5519#0      TTTATGATTCCAATAAGCACTGTTATCGAATAATTAGTGTTGAAGATTCTTCTGGTTCAA 180
consensus_5519#1      ------------------------------------------------------------
                                                                                  

consensus_5519#0      AAAAGGTTATTATTAATAGTACTTTGACGGAAAAAATGACATTCAAGAAGACTTCACAAA 240
consensus_5519#1      ------------------------------------------------------------
                                                                                  

consensus_5519#0      AATTTGGACAATGGGCTGATTCTAAAACTGGTGGAGTCCATGGTTTGGGGTTCAGCTCAG 300
consensus_5519#1      ------------------------------------------------------------
                                                                                  

consensus_5519#0      AAGCAGACTTAACCATGTTTGTCAATCAATTTAAACAATGTGTAGATTCAATGAAGACTC 360
consensus_5519#1      ------------------------------------------------------------
                                                                                  

consensus_5519#0      AAATTCAACCAGAATCAAATAGTCCATCTGGAATACGTGTACCATCAGAATCGGCAAATT 420
consensus_5519#1      ------------------------------------------------------------
                                                                                  

consensus_5519#0      TACCGAAAGACAATTTACCAAGCCCGTTACAAAATGGCCAAATT-CATCCACCAAT-ATC 478
consensus_5519#1      ----------ANANNTACATAGACAGTTT---ACTGATTAGATTACACCTACCAATGAAT 47
                                  *  ***  ** * ***    * **   * *** ** * ****** *  

consensus_5519#0      CAATAGTTGTAGTAGTATTCCA-ATTAATCAACCCACTATACCAACACTAACGCCTACAT 537
consensus_5519#1      CATTGATGGTACACGTATTCCAGATGGACTATTTGATTCTGGTTGAATTTGAGTCTTCAT 107
                      ** *  * ***   ******** **  *  *    * * *      * *   * ** ***

consensus_5519#0      GTTTAACGACTAATATTATTACTTCACATCAAAATATTTCACAAAATTTATCAAATCCAT 597
consensus_5519#1      --TGAA------------------------------------------------------ 111
                        * **                                                      

consensus_5519#0      TATCTATACAACATGTGAATTCCTCGTCATTGCCTGTTACACTGACAACACATCATTGAC 657
consensus_5519#1      ------------------------------------------------------------
                                                                                  

consensus_5519#0      ACAACTAATGGACAAATGGAAATGTATTCTAATCAATCT 696
consensus_5519#1      ---------------------------------------