cluster # 5525

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Schistosoma mansoni
cluster # 5525 cluster # 5525 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5525#0 length = 919 sequences # 1

consensus_5525#1 length = 512 sequences # 1
consensus_5525#2 length = 401 sequences # 1

consensusID : consensus_5525#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 919
fasta sequence

                              [GGTTACGAGGAGACTACTTTCAAACAGCATCCTTTAGTACACGAATTTTGGCTTGAATATGCTCATCAACCCTTGAAATGGCACTATCCGATCGGACTTGTATTTGATATGTGTGCAAATACAATGGACATTCCATGGAAGATAACAGTTCATTTTAGTAATTATCCGACTGACTTGCTTTTATCCCCACCGGTAAGTCGACTAGCCGTTGAAACACATTTTCTGTCGATGATTAAAGAAGCTGATGCTTTAAAGCATCGTAGCTACGTTATCAATCAGATGCAAGCTAGAGATCATCGGCAATTATGGAATGGCTTACTACACTTTCGATATGACCAATTTTGGTCGATCAATAGCAAATTAATGGAGCCTCTTCCACAAAATACCAAGGATCTTCCTTTAGAGGAAATGTCTGCCTCTGAAATTCCAGAAAACAAACCATTGTCTTCAAGTCTCGATAATATATCATCTTCAAAGTGAAAAACTTTTCGTTACATTCCATGTCGNCTTTATTGGGGCTCTGAAAATCCAAGTTCTACGCCCATCGGGTTACATTCGAAAACTTATCCGGCCCTTAAAAGATGACAGGTCCGTTAACTTCACTTCAGGATGCTTATGAAATCTTTTCACTAAAAATAAAAACCCGTTTGGAAAAAAACCCAAAAAAAGGGGTTTTTTGTTTTTTATCCCGGGTTTTCATTTTCCCCCAAAAAACCGGGTTATGGGATTGGGAAACCTTTTCCTATTCGCAATTGGGGTTTTTGGTGCCCCCCCAAAACCCTTCTACGGGAAAAAATTAAGACCCTTTAAAGGAAATTTTCAAACATCGGGGTTGTGCTTTAAGGCTTAATATAATATAACCCACAAGGGGTTTGGGGGGGGAACTTTATTTTTTTAAATATAAAAGAAAAATATTTCC]

[+] EMBL CD082079             [GGTTACGAGGAGACTACTTTCAAACAGCATCCTTTAGTACACGAATTTTGGCTTGAATATGCTCATCAACCCTTGAAATGGCACTATCCGATCGGACTTGTATTTGATATGTGTGCAAATACAATGGACATTCCATGGAAGATAACAGTTCATTTTAGTAATTATCCGACTGACTTGCTTTTATCCCCACCGGTAAGTCGACTAGCCGTTGAAACACATTTTCTGTCGATGATTAAAGAAGCTGATGCTTTAAAGCATCGTAGCTACGTTATCAATCAGATGCAAGCTAGAGATCATCGGCAATTATGGAATGGCTTACTACACTTTCGATATGACCAATTTTGGTCGATCAATAGCAAATTAATGGAGCCTCTTCCACAAAATACCAAGGATCTTCCTTTAGAGGAAATGTCTGCCTCTGAAATTCCAGAAAACAAACCATTGTCTTCAAGTCTCGATAATATATCATCTTCAAAGTGAAAAACTTTTCGTTACATTCCATGTCGNCTTTATTGGGGCTCTGAAAATCCAAGTTCTACGCCCATCGGGTTACATTCGAAAACTTATCCGGCCCTTAAAAGATGACAGGTCCGTTAACTTCACTTCAGGATGCTTATGAAATCTTTTCACTAAAAATAAAAACCCGTTTGGAAAAAAACCCAAAAAAAGGGGTTTTTTGTTTTTTATCCCGGGTTTTCATTTTCCCCCAAAAAACCGGGTTATGGGATTGGGAAACCTTTTCCTATTCGCAATTGGGGTTTTTGGTGCCCCCCCAAAACCCTTCTACGGGAAAAAATTAAGACCCTTTAAAGGAAATTTTCAAACATCGGGGTTGTGCTTTAAGGCTTAATATAATATAACCCACAAGGGGTTTGGGGGGGGAACTTTATTTTTTTAAATATAAAAGAAAAATATTTCC]




>consensus_5525#0
GGTTACGAGGAGACTACTTTCAAACAGCATCCTTTAGTACACGAATTTTGGCTTGAATAT
GCTCATCAACCCTTGAAATGGCACTATCCGATCGGACTTGTATTTGATATGTGTGCAAAT
ACAATGGACATTCCATGGAAGATAACAGTTCATTTTAGTAATTATCCGACTGACTTGCTT
TTATCCCCACCGGTAAGTCGACTAGCCGTTGAAACACATTTTCTGTCGATGATTAAAGAA
GCTGATGCTTTAAAGCATCGTAGCTACGTTATCAATCAGATGCAAGCTAGAGATCATCGG
CAATTATGGAATGGCTTACTACACTTTCGATATGACCAATTTTGGTCGATCAATAGCAAA
TTAATGGAGCCTCTTCCACAAAATACCAAGGATCTTCCTTTAGAGGAAATGTCTGCCTCT
GAAATTCCAGAAAACAAACCATTGTCTTCAAGTCTCGATAATATATCATCTTCAAAGTGA
AAAACTTTTCGTTACATTCCATGTCGNCTTTATTGGGGCTCTGAAAATCCAAGTTCTACG
CCCATCGGGTTACATTCGAAAACTTATCCGGCCCTTAAAAGATGACAGGTCCGTTAACTT
CACTTCAGGATGCTTATGAAATCTTTTCACTAAAAATAAAAACCCGTTTGGAAAAAAACC
CAAAAAAAGGGGTTTTTTGTTTTTTATCCCGGGTTTTCATTTTCCCCCAAAAAACCGGGT
TATGGGATTGGGAAACCTTTTCCTATTCGCAATTGGGGTTTTTGGTGCCCCCCCAAAACC
CTTCTACGGGAAAAAATTAAGACCCTTTAAAGGAAATTTTCAAACATCGGGGTTGTGCTT
TAAGGCTTAATATAATATAACCCACAAGGGGTTTGGGGGGGGAACTTTATTTTTTTAAAT
ATAAAAGAAAAATATTTCC

consensusID : consensus_5525#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 512
fasta sequence

                              [CGATAATATATCATCTTCAAAGTGTAGAACTTTTCGTTACATTCCATGTCGTCTTTATTGTGTCTCTGAGAATCCAAGTTCTACGCCATCTGGTTTCATTCAAAAACTTATTCGCCCTTTAAATGATGACGGTTCGCTTACTTCACTTCAAGATGCTATCGAAATTCTTTTCCATACAAATAAAAATCCGCTTGTACAAAATACCGAACCAAAAGGGTATCTGTTTTTCATCCACGGTATCACATTACCCCACGAAACACCGATGCAATGGATCAGCGAACACTTATCCTATCCTGACAATTGTGCATATTGTTGCACGTCCTCAGAGCCATTCTCATCGGATTAAAATTTATGATCCTTCATAAATGTAAATTTTTCCTAACATTACGGTGTATTGTCTTTCAAGTGCTTTGAATTTAAATTTTACAGTCTCAACGGTGTATGTTACGGGGTTGATAACTTTAGTATCTTTATACAATTATGATATGATGATAATAAATTCTTACCTAATC]

[-] EMBL CD075694             [CGATAATATATCATCTTCAAAGTGTAGAACTTTTCGTTACATTCCATGTCGTCTTTATTGTGTCTCTGAGAATCCAAGTTCTACGCCATCTGGTTTCATTCAAAAACTTATTCGCCCTTTAAATGATGACGGTTCGCTTACTTCACTTCAAGATGCTATCGAAATTCTTTTCCATACAAATAAAAATCCGCTTGTACAAAATACCGAACCAAAAGGGTATCTGTTTTTCATCCACGGTATCACATTACCCCACGAAACACCGATGCAATGGATCAGCGAACACTTATCCTATCCTGACAATTGTGCATATTGTTGCACGTCCTCAGAGCCATTCTCATCGGATTAAAATTTATGATCCTTCATAAATGTAAATTTTTCCTAACATTACGGTGTATTGTCTTTCAAGTGCTTTGAATTTAAATTTTACAGTCTCAACGGTGTATGTTACGGGGTTGATAACTTTAGTATCTTTATACAATTATGATATGATGATAATAAATTCTTACCTAATC]




>consensus_5525#1
CGATAATATATCATCTTCAAAGTGTAGAACTTTTCGTTACATTCCATGTCGTCTTTATTG
TGTCTCTGAGAATCCAAGTTCTACGCCATCTGGTTTCATTCAAAAACTTATTCGCCCTTT
AAATGATGACGGTTCGCTTACTTCACTTCAAGATGCTATCGAAATTCTTTTCCATACAAA
TAAAAATCCGCTTGTACAAAATACCGAACCAAAAGGGTATCTGTTTTTCATCCACGGTAT
CACATTACCCCACGAAACACCGATGCAATGGATCAGCGAACACTTATCCTATCCTGACAA
TTGTGCATATTGTTGCACGTCCTCAGAGCCATTCTCATCGGATTAAAATTTATGATCCTT
CATAAATGTAAATTTTTCCTAACATTACGGTGTATTGTCTTTCAAGTGCTTTGAATTTAA
ATTTTACAGTCTCAACGGTGTATGTTACGGGGTTGATAACTTTAGTATCTTTATACAATT
ATGATATGATGATAATAAATTCTTACCTAATC

consensusID : consensus_5525#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence

                              [GCGTCTTTAGAAAATTAATTCCTACACCAAAACTAAAATGAAGTCATACTTCCCTAGATCGCCAAATGTTACAAGTACCTATACATCTTGAAACGAAAGTAGTTGGTTTGGTTAAGGACAATCGGAAATTGTGTATTAATTGGAGTTTTGATGACTCTGGTGCACTCAGTTAAAATGATTCGCAAGTCAATTTTGCGGTTTAACTAGTAGCAAATAAGGTAGCAGATGATTTTAACAATAGTTCATACCATTTCAAGGGTTGATGAGCATATTCAAGCCAAAATTCGTGTACTAAAGGATGCTGTTTGAAAGTATCAATCTGATCGGATTGTGCATATTGCATTTCATGTTCTAATTTGCCCCGAGTCTCAGAAGTCATATCTTTGGATGCAGTCTTGAGT]

[+] EMBL CD197645             [GCGTCTTTAGAAAATTAATTCCTACACCAAAACTAAAATGAAGTCATACTTCCCTAGATCGCCAAATGTTACAAGTACCTATACATCTTGAAACGAAAGTAGTTGGTTTGGTTAAGGACAATCGGAAATTGTGTATTAATTGGAGTTTTGATGACTCTGGTGCACTCAGTTAAAATGATTCGCAAGTCAATTTTGCGGTTTAACTAGTAGCAAATAAGGTAGCAGATGATTTTAACAATAGTTCATACCATTTCAAGGGTTGATGAGCATATTCAAGCCAAAATTCGTGTACTAAAGGATGCTGTTTGAAAGTATCAATCTGATCGGATTGTGCATATTGCATTTCATGTTCTAATTTGCCCCGAGTCTCAGAAGTCATATCTTTGGATGCAGTCTTGAGT]




>consensus_5525#2
GCGTCTTTAGAAAATTAATTCCTACACCAAAACTAAAATGAAGTCATACTTCCCTAGATC
GCCAAATGTTACAAGTACCTATACATCTTGAAACGAAAGTAGTTGGTTTGGTTAAGGACA
ATCGGAAATTGTGTATTAATTGGAGTTTTGATGACTCTGGTGCACTCAGTTAAAATGATT
CGCAAGTCAATTTTGCGGTTTAACTAGTAGCAAATAAGGTAGCAGATGATTTTAACAATA
GTTCATACCATTTCAAGGGTTGATGAGCATATTCAAGCCAAAATTCGTGTACTAAAGGAT
GCTGTTTGAAAGTATCAATCTGATCGGATTGTGCATATTGCATTTCATGTTCTAATTTGC
CCCGAGTCTCAGAAGTCATATCTTTGGATGCAGTCTTGAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5525#0      GGTTACGAGGAGACTACTTTCAAACAGCATCCTTTAGTACACGAATTTTGGCTTGAATAT 60
consensus_5525#1      ------------------------------------------------------------
consensus_5525#2      ------------------------------------------------------------
                                                                                  

consensus_5525#0      GCTCATCAACCCTTGAAATGGCACTATCCGATCGGACTTGTATTTGATATGTGTGCAAAT 120
consensus_5525#1      ------------------------------------------------------------
consensus_5525#2      ------------------------------------------------------------
                                                                                  

consensus_5525#0      ACAATGGACATTCCATGGAAGATAACAGTTCATTTTAGTAATTATCCGACTGACTTGCTT 180
consensus_5525#1      ------------------------------------------------------------
consensus_5525#2      ------------------------------------------------------------
                                                                                  

consensus_5525#0      TTATCCCCACCGGTAAGTCGACTAGCCGTTGAAACACATTTTCTGTCGATGATTAAAGAA 240
consensus_5525#1      ------------------------------------------------------------
consensus_5525#2      ------------------------------------------------------------
                                                                                  

consensus_5525#0      GCTGATGCTTTAAAGCATCGTAGCTACGTTATCAATCAGATGCAAGCTAGAGATCATCGG 300
consensus_5525#1      ------------------------------------------------------------
consensus_5525#2      ------------------------------------------------------------
                                                                                  

consensus_5525#0      CAATTATGGAATGGCTTACTACACTTTCGATATGACCAATTTTGGTCGATCAATAGCAAA 360
consensus_5525#1      ------------------------------------------------------------
consensus_5525#2      ------------------------------------------------------------
                                                                                  

consensus_5525#0      TTAATGGAGCCTCTTCCACAAAATACCAAGGATCTTCCTTTAGAGGAAATGTCTGCCTCT 420
consensus_5525#1      ------------------------------------------------------------
consensus_5525#2      ------------------------------------------------------------
                                                                                  

consensus_5525#0      GAAATTCCAGAAAACAAACCATTGTCTTCAAGTCTCGATAATATATCATCTTCAAAGTGA 480
consensus_5525#1      -----------------------------------CGATAATATATCATCTTCAAAGTGT 25
consensus_5525#2      ------------------------------------------------------------
                                                                                  

consensus_5525#0      AAAACTTTTCGTTACATTCCATGTCGNCTTTATTGGGGCTCTGAAAATCCAAGTTCTACG 540
consensus_5525#1      AGAACTTTTCGTTACATTCCATGTCGTCTTTATTGTGTCTCTGAGAATCCAAGTTCTACG 85
consensus_5525#2      ---GCGTCTTTAGAAAATTAATTCCTACACCAAAACTAAAATGAAGTCATACTTCCCTAG 57
                          * * *    * * *  **  *  *   *         ***      *  * *   *

consensus_5525#0      CCCATCGGGTTACATTCGAAAACTTATCCGGCCCTTAAAAGATGACAGGTCCGTTAACTT 600
consensus_5525#1      CC-ATCTGGTTTCATTCAAAAACTTATTCGCCCTTTAAATGATGAC-GGTTCGCTTACTT 143
consensus_5525#2      ATCGCCAAATGTTA--CAAGTACCTATACA-TCTTGAAACGAAAGTAG------TTGGTT 108
                           *   *   *  * *  ** *** *   * * *** **     *      *   **

consensus_5525#0      CACTTCAGGATGCTTATGAAAT-CTTTTCACTAAAAATAAAAACCCGTTTGGAAAAAAAC 659
consensus_5525#1      CACTTCAAGATGCTATCGAAATTCTTTTCCATACAAATAAAAATCCGCTTGTACAAAATA 203
consensus_5525#2      TGGTTAAGGACAATCGGAAATTGTGTATTAATTGGAGTTTTGATGACTCTGGTGCA---- 164
                         ** * **   *    ** *   * *   *   * *    *      **    *    

consensus_5525#0      CCAAAAAAAGGGGTTTTTTGTTTTTTATCCCGGGTTTT-CATTTTCCCCCAAAAAACCGG 718
consensus_5525#1      CCGAACCAAAAGGGTATCTGTTTTTCATCCACGGTATCACATTACCCCACGAAACACCGA 263
consensus_5525#2      CTCAGTTAAAATGATTCGCAAGTCAATTTTGCGGTTTA--ACTAGTAGCAAATAAGGTAG 222
                      *  *   **   * *       *    *    *** *   * *        * *      

consensus_5525#0      GTTATGGGATTGGGAAAC-CTTTTCCTATTC--GCAATTGGGGTTTTTGGTGCCC--CCC 773
consensus_5525#1      TGCAATGGATCAGCGAACACTTATCCTATCCTGACAATTGTGCATATTGTTGCACGTCCT 323
consensus_5525#2      CAGATGATTTTAACAATAGTTCATACCATTT---CAAGGG------TTGATGAGCATATT 273
                         *     *     *    *  * * **     ***  *      *** **  *     

consensus_5525#0      CAAAACCCTTCT-ACGGGA--AAAAATTAAGACCCTTTAAAGG---AAATTTT--CAAAC 825
consensus_5525#1      CAGAGCCATTCTCATCGGATTAAAATTTATGATCCTTCATAAATGTAAATTTTTCCTAAC 383
consensus_5525#2      CAAGCCAAAATTCGTGTACTAAAGGAT----GCTGTTTGAAAGTATCAATCTGATCGGAT 329
                      **   *     *         **   *        **   *      *** *   *  * 

consensus_5525#0      ATCGGGGT----TGTGCTTTAAG-GCTT--AATATAA----TATAACCCACAAGGGGTTT 874
consensus_5525#1      ATTACGGTGTATTGTCTTTCAAGTGCTTTGAATTTAAATTTTACAGTCTCAACGGTGTAT 443
consensus_5525#2      TGTGCATA---TTGCATTTCATG---TTCTAATTTGC----CCCGAGTCTCAGAAGTCAT 379
                                  **   ** * *   **  *** *                *       *

consensus_5525#0      G----GGGG--GGGAACTTTATTTTTTT-----AAATATAAAAGAAAAATATTTCC---- 919
consensus_5525#1      GTTACGGGGTTGATAACTTTAGTATCTTTATACAATTATGATATGATGATAATAAATTCT 503
consensus_5525#2      ATCTTTGGAT-GCAGTCTTGAGT------------------------------------- 401
                            **   *    *** * *                                     

consensus_5525#0      ---------
consensus_5525#1      TACCTAATC 512
consensus_5525#2      ---------