cluster # 5527

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Schistosoma mansoni
cluster # 5527 cluster # 5527 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5527#0 length = 836 sequences # 2

consensus_5527#1 length = 240 sequences # 1

consensusID : consensus_5527#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 836
fasta sequence

                              [CTATTGAAGTATCCAGACAACGTGAACGTTTAGCCAGCACCAAAGCTGCTGCTGAAAGAAACAACGCCGCATTTGTTAAACTTCTTCAAAAACAGTCTCATCAGCGTCAAAGTATTCCAAGTGAACAGTCCCAATTATCGAATGGTGGTACAGTATCGGAGAATGAAAATTCATCTACTTCTTTGCGTATAAAATTAAAAGAATCAGAAAAACACAATTTTAGTTGCATTGATTCAGAAGGTGCTCACTTCACAACGGATAAAGATGAAATGACAGTGTCTGGTTCTAATGTTGAACATGCTACAGACCTAGATGATGACTTCTCAATGAATTCTTCATCCACAGTGCCAAATATTAGTGAGCCCTTACAAGATTCTACTGTATTTATGGAAACCAGTGATACGATTGCATCGATTGACAATACTACTAACATATTCGCTAATGACTCAAACATATCAATCCCTCCTTGTTCTAAATCTTCACAGCTATATCACGATAGAATTCAATCGAATGATCGTTCTGATCTGACTGTTGAACCTACTACTGCTCTTATAAACAATCGTTGTGATCCACCTTATCGAGAATTTGACCAAAATGCACCTGTAACATATCAGCGATCCGATAGTGGTGAATCAAACTATGCTACGTATAATGTTTCTATTCCTCATATGACCACTTTAGATCCATCCAAACCTTATCGAACATTACCTCATCAGTATAAACGTGAATCTAAAAGACCAAAGTCAAGATTTAGTGAAAGAGAATCTACTCCTCAACCCGAGTTATTTTCAGAAGTGAATTATCGCTATACCCCTTCCATCTCCAATGAATAATCG]

[+] EMBL CD117752             [CTATTGAAGTATCCAGACAACGTGAACGTTTAGCCAGCACCAAAGCTGCTGCTGAAAGAAACAACGCCGCATTTGTTAAACTTCTTCAAAAACAGTCTCATCAGCGTCAAAGTATTCCAAGTGAACAGTCCCAATTATCGAATGGTGGTACAGTATCGGAGAATGAAAATTCATCTACTTCTTTGCGTATAAAATTAAAAGAATCAGAAAAACACAATTTTAGTTGCATTGATTCAGAAGGTGCTCACTTCACAACGGATAAAGATGAAATGACAGTGTCTGGTTCTAATGTTGAACATGCTACAGACCTAGATGATGACTTCTCAATGAATTCTTCATCCACAGTGCCAAATATTAGTGAGCCCTTACAAGATTCTACTGTATTTATGGAAACCAGTGATACGATTGCATCGATTGACAATACTACTAACATATTCGCTAATGACTCAAACATATCAATCCCTCCTTGTTCTAAATCTTCACAGCTATATCACGATAGAATTCAATCGAATGATCGTTCTGATCTGACTGTTGAACCTACTACT                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD178527             [                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATTCGCTAATGACTCAAACATATCAATCCCTCCTTGTTCTAAATCTTCACAGCTATATCACGATAGAATTCAATCGAATGATCGTTCTGATCTGACTGTTGAACCTACTACTGCTCTTATAAACAATCGTTGTGATCCACCTTATCGAGAATTTGACCAAAATGCACCTGTAACATATCAGCGATCCGATAGTGGTGAATCAAACTATGCTACGTATAATGTTTCTATTCCTCATATGACCACTTTAGATCCATCCAAACCTTATCGAACATTACCTCATCAGTATAAACGTGAATCTAAAAGACCAAAGTCAAGATTTAGTGAAAGAGAATCTACTCCTCAACCCGAGTTATTTTCAGAAGTGAATTATCGCTATACCCCTTCCATCTCCAATGAATAATCG]




>consensus_5527#0
CTATTGAAGTATCCAGACAACGTGAACGTTTAGCCAGCACCAAAGCTGCTGCTGAAAGAA
ACAACGCCGCATTTGTTAAACTTCTTCAAAAACAGTCTCATCAGCGTCAAAGTATTCCAA
GTGAACAGTCCCAATTATCGAATGGTGGTACAGTATCGGAGAATGAAAATTCATCTACTT
CTTTGCGTATAAAATTAAAAGAATCAGAAAAACACAATTTTAGTTGCATTGATTCAGAAG
GTGCTCACTTCACAACGGATAAAGATGAAATGACAGTGTCTGGTTCTAATGTTGAACATG
CTACAGACCTAGATGATGACTTCTCAATGAATTCTTCATCCACAGTGCCAAATATTAGTG
AGCCCTTACAAGATTCTACTGTATTTATGGAAACCAGTGATACGATTGCATCGATTGACA
ATACTACTAACATATTCGCTAATGACTCAAACATATCAATCCCTCCTTGTTCTAAATCTT
CACAGCTATATCACGATAGAATTCAATCGAATGATCGTTCTGATCTGACTGTTGAACCTA
CTACTGCTCTTATAAACAATCGTTGTGATCCACCTTATCGAGAATTTGACCAAAATGCAC
CTGTAACATATCAGCGATCCGATAGTGGTGAATCAAACTATGCTACGTATAATGTTTCTA
TTCCTCATATGACCACTTTAGATCCATCCAAACCTTATCGAACATTACCTCATCAGTATA
AACGTGAATCTAAAAGACCAAAGTCAAGATTTAGTGAAAGAGAATCTACTCCTCAACCCG
AGTTATTTTCAGAAGTGAATTATCGCTATACCCCTTCCATCTCCAATGAATAATCG

consensusID : consensus_5527#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 240
fasta sequence

                              [GTGGTGAATCAAACTATGCTACGTCTAATGTTTCTATTCCTCATATGACCACTTTAGATCCATCCAAACCTTATCAAACATTACCTCATCAGTATAAACGTGAATCTAAAAGACCAAAGTCAAGATTTAGTGAAAGAGGATCTACTCCTCAACCCGAGTTATTTTCAGAAGTGAATTATCACTATACCCCTCCTCAGTATTCTAAAACTCATAAAGGGTCCAGACAGCGAGGTTATACAG]

[-] EMBL CD164121             [GTGGTGAATCAAACTATGCTACGTCTAATGTTTCTATTCCTCATATGACCACTTTAGATCCATCCAAACCTTATCAAACATTACCTCATCAGTATAAACGTGAATCTAAAAGACCAAAGTCAAGATTTAGTGAAAGAGGATCTACTCCTCAACCCGAGTTATTTTCAGAAGTGAATTATCACTATACCCCTCCTCAGTATTCTAAAACTCATAAAGGGTCCAGACAGCGAGGTTATACAG]




>consensus_5527#1
GTGGTGAATCAAACTATGCTACGTCTAATGTTTCTATTCCTCATATGACCACTTTAGATC
CATCCAAACCTTATCAAACATTACCTCATCAGTATAAACGTGAATCTAAAAGACCAAAGT
CAAGATTTAGTGAAAGAGGATCTACTCCTCAACCCGAGTTATTTTCAGAAGTGAATTATC
ACTATACCCCTCCTCAGTATTCTAAAACTCATAAAGGGTCCAGACAGCGAGGTTATACAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5527#0      CTATTGAAGTATCCAGACAACGTGAACGTTTAGCCAGCACCAAAGCTGCTGCTGAAAGAA 60
consensus_5527#1      ------------------------------------------------------------
                                                                                  

consensus_5527#0      ACAACGCCGCATTTGTTAAACTTCTTCAAAAACAGTCTCATCAGCGTCAAAGTATTCCAA 120
consensus_5527#1      ------------------------------------------------------------
                                                                                  

consensus_5527#0      GTGAACAGTCCCAATTATCGAATGGTGGTACAGTATCGGAGAATGAAAATTCATCTACTT 180
consensus_5527#1      ------------------------------------------------------------
                                                                                  

consensus_5527#0      CTTTGCGTATAAAATTAAAAGAATCAGAAAAACACAATTTTAGTTGCATTGATTCAGAAG 240
consensus_5527#1      ------------------------------------------------------------
                                                                                  

consensus_5527#0      GTGCTCACTTCACAACGGATAAAGATGAAATGACAGTGTCTGGTTCTAATGTTGAACATG 300
consensus_5527#1      ------------------------------------------------------------
                                                                                  

consensus_5527#0      CTACAGACCTAGATGATGACTTCTCAATGAATTCTTCATCCACAGTGCCAAATATTAGTG 360
consensus_5527#1      ------------------------------------------------------------
                                                                                  

consensus_5527#0      AGCCCTTACAAGATTCTACTGTATTTATGGAAACCAGTGATACGATTGCATCGATTGACA 420
consensus_5527#1      ------------------------------------------------------------
                                                                                  

consensus_5527#0      ATACTACTAACATATTCGCTAATGACTCAAACATATCAATCCCTCCTTGTTCTAAATCTT 480
consensus_5527#1      ------------------------------------------------------------
                                                                                  

consensus_5527#0      CACAGCTATATCACGATAGAATTCAATCGAATGATCGTTCTGATCTGACTGTTGAACCTA 540
consensus_5527#1      ------------------------------------------------------------
                                                                                  

consensus_5527#0      CTACTGCTCTTATAAACAATCGTTGTGATCCACCTTATCGAGAATTTGACCAAAATGCAC 600
consensus_5527#1      ------------------------------------------------------------
                                                                                  

consensus_5527#0      CTGTAACATATCAGCGATCCGATAGTGGTGAATCAAACTATGCTACGTATAATGTTTCTA 660
consensus_5527#1      ------------------------GTGGTGAATCAAACTATGCTACGTCTAATGTTTCTA 36
                                              ************************ ***********

consensus_5527#0      TTCCTCATATGACCACTTTAGATCCATCCAAACCTTATCGAACATTACCTCATCAGTATA 720
consensus_5527#1      TTCCTCATATGACCACTTTAGATCCATCCAAACCTTATCAAACATTACCTCATCAGTATA 96
                      *************************************** ********************

consensus_5527#0      AACGTGAATCTAAAAGACCAAAGTCAAGATTTAGTGAAAGAGAATCTACTCCTCAACCCG 780
consensus_5527#1      AACGTGAATCTAAAAGACCAAAGTCAAGATTTAGTGAAAGAGGATCTACTCCTCAACCCG 156
                      ****************************************** *****************

consensus_5527#0      AGTTATTTTCAGAAGTGAATTATCGCTATACCCCTTCC--ATCTCCAATGAATAATCG-- 836
consensus_5527#1      AGTTATTTTCAGAAGTGAATTATCACTATACCCCTCCTCAGTATTCTAAAACTCATAAAG 216
                      ************************ ********** *    * * * *  * * **    

consensus_5527#0      ------------------------
consensus_5527#1      GGTCCAGACAGCGAGGTTATACAG 240