cluster # 5529

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Schistosoma mansoni
cluster # 5529 cluster # 5529 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5529#0 length = 657 sequences # 2

consensus_5529#1 length = 115 sequences # 1

consensusID : consensus_5529#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 657
fasta sequence

                              [ATCATATTTTTATTTTTAATTAAATTCAATTGTGAAATACAAAATGTTAAGTCAATGTCAACTTGTTAACAGTTCCTTGAATTTCTTTAAAAGATCTGTAACCCGAGTCTTCTCAAATAATGTTGTACCCGTAGTTGATTCTTCGCCTAAATTATTCACATATTCTTGAACTGTATCAAGTACGGAATTCACTGAAATGGATCGCATTTTCAATAGATGAAGTACACGTTCCAAAATCGTTGGTGCACCGTTTACACAAACATCAAGAATTATAACGTCCAAAACTTGTAATGGCAATAGTCCACCTTCTAAACGTTTGAGCATTAATTCTGTTTCCACTTCTCCCCGAGTATAACCGATCCACTTTTTCTCGTTCCTTCGCATTATTTCGACTTTACTATCCGTTGCTTTAACAATATCTAAGTATTTCAAATGTAATTCAATTAGTCGATCCACTTTTTCATGATCATTCTCAACAAATTTAGCCAAAACGCGAGGTTTAAAAGTTTCCGGAGGTGAATGACGAAGCAAAGCGGAAATAATATTAATCACATGTTCTTCCATTTCAGCTGCAGTTGGACCACTGATAACTTTCACCTTGGTTTTTGAACCAGATGAAGTTGATCGAAGTGCATGTTCACGTGGACAATGCATAAA]

[+] EMBL CD073719             [ATCATATTTTTATTTTTAATTAAATTCAATTGTGAAATACAAAATGTTAAGTCAATGTCAACTTGTTAACAGTTCCTTGAATTTCTTTAAAAGATCTGTAACCCGAGTCTTCTCAAATAATGTTGTACCCGTAGTTGATTCTTCGCCTAAATTATTCACATATTCTTGAACTGTATCAAGTACGGAATTCACTGAAATGGATCGCATTTTCAATAGATGAAGTACACGTTCCAAAATCGTTGGTGCACCGTTTACACAAACATCAAGAATTATAACGTCCAAAACTTGTAATGGCAATAGTCCACCTTCTAAACGTTTGAGCATTAATTCTGTTTCCACTTCTCCCCGAGTATAACCGATCCACTTTTTCTCGTTCCTTCGCATTATTTCGACTTTACTATCCGTTGCTTTAACAATATCTAAGTATTTCAAATGTAATTCAATTAGTCGATCCACTTTTTCATGATCATTCTCAACAAATTTAGCCAAAACGCGAGGTTTAAAAGTTTCCGGAGGTGAATGACGAAGCAAAGCGGAAATAATATTAATCACATGTTCTTCCATTTCAGCTGCAGTTGGACCACTGATAACTTTCACCTTGGTTTTTGAACCAGATGAAGTTGATCGAAGTGCATGTTCACGTGGACAATGCATAAA]
[-] EMBL CD184268             [                                                                                                                                                                                                                                                                                                                                                     ccaCCCGCGTATAACCGATCCACTTTTTCTCGTTCCTTCGCATTATTTCGACTTTACTATCCGTTGCTTTAACAATATCTAAGTATTTCAAATGTAATTCAATTAGTCGATCCACTTTTTCATGATCATTCTCAACAAATTTAGCCAAAACGCGAGGTTTAAAAGTTTCCGGAGGTGAATGACGAAGCAAAGCGGAAATAATATTAATCACATGTTCTTCC                                                                                               ]




>consensus_5529#0
ATCATATTTTTATTTTTAATTAAATTCAATTGTGAAATACAAAATGTTAAGTCAATGTCA
ACTTGTTAACAGTTCCTTGAATTTCTTTAAAAGATCTGTAACCCGAGTCTTCTCAAATAA
TGTTGTACCCGTAGTTGATTCTTCGCCTAAATTATTCACATATTCTTGAACTGTATCAAG
TACGGAATTCACTGAAATGGATCGCATTTTCAATAGATGAAGTACACGTTCCAAAATCGT
TGGTGCACCGTTTACACAAACATCAAGAATTATAACGTCCAAAACTTGTAATGGCAATAG
TCCACCTTCTAAACGTTTGAGCATTAATTCTGTTTCCACTTCTCCCCGAGTATAACCGAT
CCACTTTTTCTCGTTCCTTCGCATTATTTCGACTTTACTATCCGTTGCTTTAACAATATC
TAAGTATTTCAAATGTAATTCAATTAGTCGATCCACTTTTTCATGATCATTCTCAACAAA
TTTAGCCAAAACGCGAGGTTTAAAAGTTTCCGGAGGTGAATGACGAAGCAAAGCGGAAAT
AATATTAATCACATGTTCTTCCATTTCAGCTGCAGTTGGACCACTGATAACTTTCACCTT
GGTTTTTGAACCAGATGAAGTTGATCGAAGTGCATGTTCACGTGGACAATGCATAAA

consensusID : consensus_5529#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 115
fasta sequence

                              [TTCGGGCGAGTGAGTTTTACAGATCTTTTAAAGAAATTCAAGGAACTGTTAACAAGTTGACATTGACTTAACATTTTGTATTTCACAATCTAATTTAATTAAAATATATATATGA]

[+] EMBL AI764949             [TTCGGGCGAGTGAGTTTTACAGATCTTTTAAAGAAATTCAAGGAACTGTTAACAAGTTGACATTGACTTAACATTTTGTATTTCACAATCTAATTTAATTAAAATATATATATGA]




>consensus_5529#1
TTCGGGCGAGTGAGTTTTACAGATCTTTTAAAGAAATTCAAGGAACTGTTAACAAGTTGA
CATTGACTTAACATTTTGTATTTCACAATCTAATTTAATTAAAATATATATATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5529#0      ATCATATTTTTATTTTTAATTAAATTCAATTGTGAAATACAAAATGTTAAGTCAATGTCA 60
consensus_5529#1      ---------TTCGGGCGAGTGAGTTTTACAGATCTTTTAAAGAAATTCAAGGAACTGTTA 51
                               **      * * *  ** *    *    ** * **  * ***  * *** *

consensus_5529#0      ACTTGTTAACAGTTCCTTGAATTTCTTTAAAAGATCTGTAACCCGAGTCTTCTCAAATAA 120
consensus_5529#1      ACAAGTTGACATTGACTTAACATTTTGTAT----TTCACAATCTAATTTAATTAAAATAT 107
                      **  *** *** *  *** *  ** * **     *    ** *  * *    * ***** 

consensus_5529#0      TGTTGTACCCGTAGTTGATTCTTCGCCTAAATTATTCACATATTCTTGAACTGTATCAAG 180
consensus_5529#1      ATATATGA---------------------------------------------------- 115
                         * *                                                      

consensus_5529#0      TACGGAATTCACTGAAATGGATCGCATTTTCAATAGATGAAGTACACGTTCCAAAATCGT 240
consensus_5529#1      ------------------------------------------------------------
                                                                                  

consensus_5529#0      TGGTGCACCGTTTACACAAACATCAAGAATTATAACGTCCAAAACTTGTAATGGCAATAG 300
consensus_5529#1      ------------------------------------------------------------
                                                                                  

consensus_5529#0      TCCACCTTCTAAACGTTTGAGCATTAATTCTGTTTCCACTTCTCCCCGAGTATAACCGAT 360
consensus_5529#1      ------------------------------------------------------------
                                                                                  

consensus_5529#0      CCACTTTTTCTCGTTCCTTCGCATTATTTCGACTTTACTATCCGTTGCTTTAACAATATC 420
consensus_5529#1      ------------------------------------------------------------
                                                                                  

consensus_5529#0      TAAGTATTTCAAATGTAATTCAATTAGTCGATCCACTTTTTCATGATCATTCTCAACAAA 480
consensus_5529#1      ------------------------------------------------------------
                                                                                  

consensus_5529#0      TTTAGCCAAAACGCGAGGTTTAAAAGTTTCCGGAGGTGAATGACGAAGCAAAGCGGAAAT 540
consensus_5529#1      ------------------------------------------------------------
                                                                                  

consensus_5529#0      AATATTAATCACATGTTCTTCCATTTCAGCTGCAGTTGGACCACTGATAACTTTCACCTT 600
consensus_5529#1      ------------------------------------------------------------
                                                                                  

consensus_5529#0      GGTTTTTGAACCAGATGAAGTTGATCGAAGTGCATGTTCACGTGGACAATGCATAAA 657
consensus_5529#1      ---------------------------------------------------------