cluster # 5535

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Schistosoma mansoni
cluster # 5535 cluster # 5535 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5535#0 length = 376 sequences # 1

consensus_5535#1 length = 361 sequences # 1
consensus_5535#2 length = 294 sequences # 1

consensusID : consensus_5535#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 376
fasta sequence

                              [TATTAGTAGGTCAATTATTTTATTATTGGAATGTATCATCTGTTTCCACAACAACAACAACAACTAAACCACCACCACCACAACAACAAGAACAGTATCCAACACGTAAAGTTAAAGTGAATTAATTCTATATTCTTTATGTTGTTACTGTCTATCGCTATCCTTTTGTATACGGATTCATTATACAGACGGGGTTATTCCATGGAATGGTTTTTTGGACTTGGATTTTACCCCTTTTTTTATACCAGTCTCTATGGACTTATTCATCGGGAACTCACTTGTTTCTCTCACCTCGGGGAAAATGAGCTGAGTTTTGGTGCATAAACATTGGGTTTTCCACATGTGTTTTCACCAGTGGAGTTCTTCATGTGTTTTT]

[+] EMBL AW146520             [TATTAGTAGGTCAATTATTTTATTATTGGAATGTATCATCTGTTTCCACAACAACAACAACAACTAAACCACCACCACCACAACAACAAGAACAGTATCCAACACGTAAAGTTAAAGTGAATTAATTCTATATTCTTTATGTTGTTACTGTCTATCGCTATCCTTTTGTATACGGATTCATTATACAGACGGGGTTATTCCATGGAATGGTTTTTTGGACTTGGATTTTACCCCTTTTTTTATACCAGTCTCTATGGACTTATTCATCGGGAACTCACTTGTTTCTCTCACCTCGGGGAAAATGAGCTGAGTTTTGGTGCATAAACATTGGGTTTTCCACATGTGTTTTCACCAGTGGAGTTCTTCATGTGTTTTT]




>consensus_5535#0
TATTAGTAGGTCAATTATTTTATTATTGGAATGTATCATCTGTTTCCACAACAACAACAA
CAACTAAACCACCACCACCACAACAACAAGAACAGTATCCAACACGTAAAGTTAAAGTGA
ATTAATTCTATATTCTTTATGTTGTTACTGTCTATCGCTATCCTTTTGTATACGGATTCA
TTATACAGACGGGGTTATTCCATGGAATGGTTTTTTGGACTTGGATTTTACCCCTTTTTT
TATACCAGTCTCTATGGACTTATTCATCGGGAACTCACTTGTTTCTCTCACCTCGGGGAA
AATGAGCTGAGTTTTGGTGCATAAACATTGGGTTTTCCACATGTGTTTTCACCAGTGGAG
TTCTTCATGTGTTTTT

consensusID : consensus_5535#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence

                              [CAACAAGAACAGTATCCAACACGTAAAGTTAAAGTGAATTAATTCTATATTCTTTATGGTGGTACTGTCTATCGCTATCCTTTTGTATACGGATTCATTATACAGACGGGTTATTCCATGTATGTTTTTTTGAACTTGTATTTTACCCCTTTTTTTATACCAGTTTCATGACTTATTCAATCGGTAACTCATTTGTTTCTTTCACTTTGGTTACAATGACTGAATTTATGATCAATATACAATTGAGTTTTCATAATTAGTTTTCATCATGATGATAATCTTATTGATATTTCTTTGAAAAAAGCTTAGACCAGATTACCAGGCAAAACGTTGGATTTACTTCAAATTCCAAATATATTTT]

[-] EMBL CD077254             [CAACAAGAACAGTATCCAACACGTAAAGTTAAAGTGAATTAATTCTATATTCTTTATGGTGGTACTGTCTATCGCTATCCTTTTGTATACGGATTCATTATACAGACGGGTTATTCCATGTATGTTTTTTTGAACTTGTATTTTACCCCTTTTTTTATACCAGTTTCATGACTTATTCAATCGGTAACTCATTTGTTTCTTTCACTTTGGTTACAATGACTGAATTTATGATCAATATACAATTGAGTTTTCATAATTAGTTTTCATCATGATGATAATCTTATTGATATTTCTTTGAAAAAAGCTTAGACCAGATTACCAGGCAAAACGTTGGATTTACTTCAAATTCCAAATATATTTT]




>consensus_5535#1
CAACAAGAACAGTATCCAACACGTAAAGTTAAAGTGAATTAATTCTATATTCTTTATGGT
GGTACTGTCTATCGCTATCCTTTTGTATACGGATTCATTATACAGACGGGTTATTCCATG
TATGTTTTTTTGAACTTGTATTTTACCCCTTTTTTTATACCAGTTTCATGACTTATTCAA
TCGGTAACTCATTTGTTTCTTTCACTTTGGTTACAATGACTGAATTTATGATCAATATAC
AATTGAGTTTTCATAATTAGTTTTCATCATGATGATAATCTTATTGATATTTCTTTGAAA
AAAGCTTAGACCAGATTACCAGGCAAAACGTTGGATTTACTTCAAATTCCAAATATATTT
T

consensusID : consensus_5535#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 294
fasta sequence

                              [AGTATCCAACACGTAAAGTTAAAGTGAATTAATTCTATATCTTAATGTATGTTACGGTAAGTCGCTATCCTTTTGTATAGGGATTCATTATACAGACGGGTTATTCCATGTATGTTTTTTTGAACTTGTATTTGACCCGTTTTTTTATACCAGTCTCATAACTTATTCAATCGGTAACTCATTTGTTTTTTTCACTTTGGTTACAAAGCCTGAATTTATGATCAATATACAATTGAGTTTTCATAAAAAAAAAAAAAAAAAAAAAAAAAAATACATGCCATGCAGCTGCATACC]

[-] EMBL AW017417             [AGTATCCAACACGTAAAGTTAAAGTGAATTAATTCTATATCTTAATGTATGTTACGGTAAGTCGCTATCCTTTTGTATAGGGATTCATTATACAGACGGGTTATTCCATGTATGTTTTTTTGAACTTGTATTTGACCCGTTTTTTTATACCAGTCTCATAACTTATTCAATCGGTAACTCATTTGTTTTTTTCACTTTGGTTACAAAGCCTGAATTTATGATCAATATACAATTGAGTTTTCATAAAAAAAAAAAAAAAAAAAAAAAAAAATACATGCCATGCAGCTGCATACC]




>consensus_5535#2
AGTATCCAACACGTAAAGTTAAAGTGAATTAATTCTATATCTTAATGTATGTTACGGTAA
GTCGCTATCCTTTTGTATAGGGATTCATTATACAGACGGGTTATTCCATGTATGTTTTTT
TGAACTTGTATTTGACCCGTTTTTTTATACCAGTCTCATAACTTATTCAATCGGTAACTC
ATTTGTTTTTTTCACTTTGGTTACAAAGCCTGAATTTATGATCAATATACAATTGAGTTT
TCATAAAAAAAAAAAAAAAAAAAAAAAAAAATACATGCCATGCAGCTGCATACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5535#1      ------------------------------------------------------------
consensus_5535#2      ------------------------------------------------------------
consensus_5535#0      TATTAGTAGGTCAATTATTTTATTATTGGAATGTATCATCTGTTTCCACAACAACAACAA 60
                                                                                  

consensus_5535#1      -----------------------CAACAAGAACAGTATCCAACACGTAAAGTTAAAGTGA 37
consensus_5535#2      ---------------------------------AGTATCCAACACGTAAAGTTAAAGTGA 27
consensus_5535#0      CAACTAAACCACCACCACCACAACAACAAGAACAGTATCCAACACGTAAAGTTAAAGTGA 120
                                                       ***************************

consensus_5535#1      ATTAATTCTATATTCTTTATG-GTGGTACTGTCTATCGCTATCCTTTTGTATACGGATTC 96
consensus_5535#2      ATTAATTCTATAT-CTTAATGTATGTTACGGTAAGTCGCTATCCTTTTGTATAGGGATTC 86
consensus_5535#0      ATTAATTCTATATTCTTTATG-TTGTTACTGTCTATCGCTATCCTTTTGTATACGGATTC 179
                      ************* *** ***  ** *** **   ****************** ******

consensus_5535#1      ATTATACAGACGGG-TTATTCCATGTA-TGTTTTTTTGAACTTGTATTTTACCCCTTTTT 154
consensus_5535#2      ATTATACAGACGGG-TTATTCCATGTA-TGTTTTTTTGAACTTGTATTTGACCCGTTTTT 144
consensus_5535#0      ATTATACAGACGGGGTTATTCCATGGAATGGTTTTTTGGACTTGGATTTTACCCCTTTTT 239
                      ************** ********** * ** ******* ***** **** **** *****

consensus_5535#1      TTATACCAGTTTC-ATG-ACTTATTCAATCGGTAACTCATTTGTTTCTTTCACTTTGGTT 212
consensus_5535#2      TTATACCAGTCTC-ATA-ACTTATTCAATCGGTAACTCATTTGTTTTTTTCACTTTGGTT 202
consensus_5535#0      TTATACCAGTCTCTATGGACTTATTCA-TCGGGAACTCACTTGTTTCTCTCACCTCGGGG 298
                      ********** ** **  ********* **** ****** ****** * **** * **  

consensus_5535#1      ACAATGACTGAATTTATGATCAATATACAATTGAGTTTTCATAATTAGTTTTCATCATGA 272
consensus_5535#2      ACAAAGCCTGAATTTATGATCAATATACAATTGAGTTTTCATAAAAAAAAAAAAAAAAAA 262
consensus_5535#0      AAAATGAGCTGAGTTTTGGTGCATAAACA-TTGGGTTTTCCACATGTGTTTTCACCA-GT 356
                      * ** *     * ** ** *  *** *** *** ******   *         *  *   

consensus_5535#1      TGATAATCTTAT-TGATATTTCTTTGAAAAAAGCTTAGACCAGATTACCAGGCAAAACGT 331
consensus_5535#2      AAAAAAAAATACATGCCATGCAGCTGCATACC---------------------------- 294
consensus_5535#0      GGAGTTCTTCATGTGTTTTT---------------------------------------- 376
                        *       *  **   *                                         

consensus_5535#1      TGGATTTACTTCAAATTCCAAATATATTTT 361
consensus_5535#2      ------------------------------
consensus_5535#0      ------------------------------