cluster # 5538

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Schistosoma mansoni
cluster # 5538 cluster # 5538 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5538#0 length = 716 sequences # 1

consensus_5538#1 length = 553 sequences # 2

consensusID : consensus_5538#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 716
fasta sequence

                              [CGATTTATCATAATCAACATGATTGTACAGAACAATGTTCAATCGAAGCAAAAAGGACATTCTTTTTCGGGTTTTTGAGATACCAAACTTGAAGATCCTTCATAACGTTGGCAGTGATTTGTGGGTTGTATTACGTAAAGTGCAATGTGGTCTTCTTCATATGAAAGGAGATCCCTCTCATCATTTGATTTAGTACAGTAAGTTATTAGACCATGACTAAAATTAGTGGGATATGTACACAAGTAATCTTTGTCTATGTTAATTTCACGAAAAATACATTTTATAAAATCAGTTAAACATGAACATATTTCTTTCGTTTCATTAAACACAAACCAAGTTCGATTTAATTTTCCCCCTTTGGTAAGAATAAGCCAATCTATATCTTTTCTCCAAGTCCCACTTCCTTGTTTTATATATGATTGACTGTTTTAAAAGGTCGAATATATTTGAGCCATTTCAGAAATGATACAAATCAAGGTTGATATTTTTTGGAAAATACATCTTAAAGAAATCGAACACTTGGAAATAATTAGATGTAGTCAATAGGGGCAATTGATCTATGTATACTGGATTGATGAAATCGGGATCAAGCGTATGTGAAAGAAAAAATCGATACTATTCAGGGAACGTATTTTCTGACAGTTTACAGCTAGTCGAAATAATGACTTTTATGTATAAACTGTTTTAATGTATGATCTAAGCTAGACCATCAATGG]

[+] EMBL CD076939             [CGATTTATCATAATCAACATGATTGTACAGAACAATGTTCAATCGAAGCAAAAAGGACATTCTTTTTCGGGTTTTTGAGATACCAAACTTGAAGATCCTTCATAACGTTGGCAGTGATTTGTGGGTTGTATTACGTAAAGTGCAATGTGGTCTTCTTCATATGAAAGGAGATCCCTCTCATCATTTGATTTAGTACAGTAAGTTATTAGACCATGACTAAAATTAGTGGGATATGTACACAAGTAATCTTTGTCTATGTTAATTTCACGAAAAATACATTTTATAAAATCAGTTAAACATGAACATATTTCTTTCGTTTCATTAAACACAAACCAAGTTCGATTTAATTTTCCCCCTTTGGTAAGAATAAGCCAATCTATATCTTTTCTCCAAGTCCCACTTCCTTGTTTTATATATGATTGACTGTTTTAAAAGGTCGAATATATTTGAGCCATTTCAGAAATGATACAAATCAAGGTTGATATTTTTTGGAAAATACATCTTAAAGAAATCGAACACTTGGAAATAATTAGATGTAGTCAATAGGGGCAATTGATCTATGTATACTGGATTGATGAAATCGGGATCAAGCGTATGTGAAAGAAAAAATCGATACTATTCAGGGAACGTATTTTCTGACAGTTTACAGCTAGTCGAAATAATGACTTTTATGTATAAACTGTTTTAATGTATGATCTAAGCTAGACCATCAATGG]




>consensus_5538#0
CGATTTATCATAATCAACATGATTGTACAGAACAATGTTCAATCGAAGCAAAAAGGACAT
TCTTTTTCGGGTTTTTGAGATACCAAACTTGAAGATCCTTCATAACGTTGGCAGTGATTT
GTGGGTTGTATTACGTAAAGTGCAATGTGGTCTTCTTCATATGAAAGGAGATCCCTCTCA
TCATTTGATTTAGTACAGTAAGTTATTAGACCATGACTAAAATTAGTGGGATATGTACAC
AAGTAATCTTTGTCTATGTTAATTTCACGAAAAATACATTTTATAAAATCAGTTAAACAT
GAACATATTTCTTTCGTTTCATTAAACACAAACCAAGTTCGATTTAATTTTCCCCCTTTG
GTAAGAATAAGCCAATCTATATCTTTTCTCCAAGTCCCACTTCCTTGTTTTATATATGAT
TGACTGTTTTAAAAGGTCGAATATATTTGAGCCATTTCAGAAATGATACAAATCAAGGTT
GATATTTTTTGGAAAATACATCTTAAAGAAATCGAACACTTGGAAATAATTAGATGTAGT
CAATAGGGGCAATTGATCTATGTATACTGGATTGATGAAATCGGGATCAAGCGTATGTGA
AAGAAAAAATCGATACTATTCAGGGAACGTATTTTCTGACAGTTTACAGCTAGTCGAAAT
AATGACTTTTATGTATAAACTGTTTTAATGTATGATCTAAGCTAGACCATCAATGG

consensusID : consensus_5538#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 553
fasta sequence

                              [ATCGATTTATTATAATTAACATGATTGTACAGAACAATGTTCAATCGAAGCAAAAAGGACATTCTTTTTCGGGTTTTTGAGATACCAAACTTGAAGATCCTTCATAACGTTGGCAGTGATTTGTGGGTTGTATTACGTAAAGTGCAATGTGGTCTTCTTCATATGAAAGGAGATCCCTCTCATCATTTGATTTAGTACAGTAAGTTATTAGACCATGACTAAAATTAGTGGGATATGTACACAAGTAATCTTTGTCTATGTTAATTTCACGAAAAATACATTTTATAAAATCAGTTAAACATGAACATATTTCTTTCGTTTCATTAAACACAAACCAAGTTCGATTTAATTTTCCCCCTTTGGTAAGAATAAGCCAATCTATATCTTTTCTCCAAGTCCCACTTCCATCACTTTTGAAGACTATCAAAAATAGAGACCAGAAAATAAGGATAAAACATGGTAATATAAACACTTGATATGGAGTCAATATCAAATCCCTGTTAGCCATTGATTATGTAATAAATAAGAATTCTCCTCGTGCCAAATTNTGGCC]

[+] EMBL CD073747             [ATCGATTTATTATAATTAACATGATTGTACAGAACAATGTTCAATCGAAGCAAAAAGGACATTCTTTTTCGGGTTTTTGAGATACCAAACTTGAAGATCCTTCATAACGTTGGCAGTGATTTGTGGGTTGTATTACGTAAAGTGCAATGTGGTCTTCTTCATATGAAAGGAGATCCCTCTCATCATTTGATTTAGTACAGTAAGTTATTAGACCATGACTAAAATTAGTGGGATATGTACACAAGTAATCTTTGTCTATGTTAATTTCACGAAAAATACATTTTATAAAATCAGTTAAACATGAACATATTTCTTTCGTTTCATTAAACACAAACCAAGTTCGATTTAATTTTCCCCCTTTGGTAAGAATAAGCCAATCTATATCTTTTCTCCAAGTCCCACTTCCATCACTTTTGAAGACTATCAAAAATAGAGACCAGAAAATAAGGATAAAACATGGTAATATAAACACTTGATATGGAGTCAATATCAAATCCCTGTTAGCCATTGATTATGTAATAAATAAGAATTC                     ]
[-] EMBL CD079477             [ TCGATTTATTATAATCAACATGATTGTACAGAACAATGTTCAATCGAAGCAAAAAGGACATTCTTTTTCGGGTTTTTGAGATACCAAACTTGAAGATCCTTCATAACGTTGGCAGTGATTTGTGGGTTGTATTACGTAAAGTGCAATGTGGTCTTCTTCATATGAAAGGAGATCCCTCTCATCATTTGATTTAGTACAGTAAGTTATTAGACCATGACTAAAATTAGTGGGATATGTACACAAGTAATCTTTGTCTATGTTAATTTCACGAAAAATACATTTTATAAAATCAGTTAAACATGAACATATTTCTTTCGTTTCATTAAACACAAACCAAGTTCGATTTAATTTTCCCCCTTTGGTAAGAATAAGCCAATCTATATCTTTTCTCCAAGTCCCACTTCCATCACTTTTGAAGACTATCAAAAATAGAGACCAGAAAATAAGGATAAAACATGGTAATATAAACACTTGATATGGAGTCAATATCAAATCCCTGTTAGCCATTGATTATGTAATAAATAAGAAGTCTCCTCGTGCCAAATTNTGGCC]




>consensus_5538#1
ATCGATTTATTATAATTAACATGATTGTACAGAACAATGTTCAATCGAAGCAAAAAGGAC
ATTCTTTTTCGGGTTTTTGAGATACCAAACTTGAAGATCCTTCATAACGTTGGCAGTGAT
TTGTGGGTTGTATTACGTAAAGTGCAATGTGGTCTTCTTCATATGAAAGGAGATCCCTCT
CATCATTTGATTTAGTACAGTAAGTTATTAGACCATGACTAAAATTAGTGGGATATGTAC
ACAAGTAATCTTTGTCTATGTTAATTTCACGAAAAATACATTTTATAAAATCAGTTAAAC
ATGAACATATTTCTTTCGTTTCATTAAACACAAACCAAGTTCGATTTAATTTTCCCCCTT
TGGTAAGAATAAGCCAATCTATATCTTTTCTCCAAGTCCCACTTCCATCACTTTTGAAGA
CTATCAAAAATAGAGACCAGAAAATAAGGATAAAACATGGTAATATAAACACTTGATATG
GAGTCAATATCAAATCCCTGTTAGCCATTGATTATGTAATAAATAAGAATTCTCCTCGTG
CCAAATTNTGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5538#0      --CGATTTATCATAATCAACATGATTGTACAGAACAATGTTCAATCGAAGCAAAAAGGAC 58
consensus_5538#1      ATCGATTTATTATAATTAACATGATTGTACAGAACAATGTTCAATCGAAGCAAAAAGGAC 60
                        ******** ***** *******************************************

consensus_5538#0      ATTCTTTTTCGGGTTTTTGAGATACCAAACTTGAAGATCCTTCATAACGTTGGCAGTGAT 118
consensus_5538#1      ATTCTTTTTCGGGTTTTTGAGATACCAAACTTGAAGATCCTTCATAACGTTGGCAGTGAT 120
                      ************************************************************

consensus_5538#0      TTGTGGGTTGTATTACGTAAAGTGCAATGTGGTCTTCTTCATATGAAAGGAGATCCCTCT 178
consensus_5538#1      TTGTGGGTTGTATTACGTAAAGTGCAATGTGGTCTTCTTCATATGAAAGGAGATCCCTCT 180
                      ************************************************************

consensus_5538#0      CATCATTTGATTTAGTACAGTAAGTTATTAGACCATGACTAAAATTAGTGGGATATGTAC 238
consensus_5538#1      CATCATTTGATTTAGTACAGTAAGTTATTAGACCATGACTAAAATTAGTGGGATATGTAC 240
                      ************************************************************

consensus_5538#0      ACAAGTAATCTTTGTCTATGTTAATTTCACGAAAAATACATTTTATAAAATCAGTTAAAC 298
consensus_5538#1      ACAAGTAATCTTTGTCTATGTTAATTTCACGAAAAATACATTTTATAAAATCAGTTAAAC 300
                      ************************************************************

consensus_5538#0      ATGAACATATTTCTTTCGTTTCATTAAACACAAACCAAGTTCGATTTAATTTTCCCCCTT 358
consensus_5538#1      ATGAACATATTTCTTTCGTTTCATTAAACACAAACCAAGTTCGATTTAATTTTCCCCCTT 360
                      ************************************************************

consensus_5538#0      TGGTAAGAATAAGCCAATCTATATCTTTTCTCCAAGTCCCACTTCCTTGTTTTATATATG 418
consensus_5538#1      TGGTAAGAATAAGCCAATCTATATCTTTTCTCCAAGTCCCACTTCCATCACTT------- 413
                      ********************************************** *   **       

consensus_5538#0      ATTGACTGTTTTAAAAGGTCGAATATATTTGAGCCATTTCAGAAATGATACAAATCAAGG 478
consensus_5538#1      -TTGAAGACTATCAAAAATAGAGACCAGAAAA-------TAAGGATAAAACATGGTAATA 465
                       ****    * * ***  * **    *    *        *   ** * ***    **  

consensus_5538#0      TTGATATTTTTTGGAAAATACATCTTAAAGAAATCGAACACTTGGAAATAATTAG--ATG 536
consensus_5538#1      TAAACACTTGATATGGAGTCAAT---------ATCAAATCCCTGTTAGCCATTGATTATG 516
                      *  * * **  *    * *  **         *** **  * **  *   ***    ***

consensus_5538#0      TAGTCAATAGGGGCAATTGATCTATGTATACTGGATTGATGAAATCGGGATCAAGCGTAT 596
consensus_5538#1      TAATAAATAAGAAT------TCTCCTCGTGCCAAATTNTGGCC----------------- 553
                      ** * **** *         ***     * *   ***   *                   

consensus_5538#0      GTGAAAGAAAAAATCGATACTATTCAGGGAACGTATTTTCTGACAGTTTACAGCTAGTCG 656
consensus_5538#1      ------------------------------------------------------------
                                                                                  

consensus_5538#0      AAATAATGACTTTTATGTATAAACTGTTTTAATGTATGATCTAAGCTAGACCATCAATGG 716
consensus_5538#1      ------------------------------------------------------------