cluster # 5543

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Schistosoma mansoni
cluster # 5543 cluster # 5543 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5543#0 length = 602 sequences # 2

consensus_5543#1 length = 376 sequences # 1

consensusID : consensus_5543#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 602
fasta sequence

                              [CATTCATCTCGAGTGGAAGCAAAGAACCCCGCTCTGCTCTCGAGTCGCGACGGGTATCTCTTGCAGCTCACTGGGTGGACTAGAGGGAGTCAAGCCTCCTGAGGCGTTTGGAGAGAGGTCGCGAGGTTGGCCTCTAGGCCATGCAGGAGACGAAGGCCCTCATCTCCGCGATGACGGGGGAGTCTCGGAGTGGTTCTCGAGCGGCGGCCCCAGGGTGCGGTTTCTCACGAGGTGCGACGGCGAGGTCAGTGAGCCTCTCGTGGGGCGCCAGGGAAGTCGGGTCTCCATGCGAGTGGCGAGGGGGAGCGCGTCATTGCTCACGAGCCATGGTAGGGGAATCTGGCCTCGAGACGTGTTGAAGAAGGTCTCTCGAGGTCTTTCCCGGGTTGAGGCAGGAAACCCTGGGTTCCCTCGACTTGTGCAGGTGACCTCAGGGGGCTTCTCGTGGTGGCTCTGAGAAGACAGGGAAACTGGAGGTGGGAGGGGCCTCTCGGGACTCCACTGGGTTTGGTACATTGGAAGAGGGCCTCATCTCCAGTTGAGGCAGGAACCGCAGGGTACCTCTGATTTCAGACTACGATCGCAGGGTCCCTGCAGACTGG]

[+] EMBL CD110887             [CATTCATCTCGAGTGGAAGCAAAGAACCCCGCTCTGCTCTCGAGTCGCGACGGGTATCTCTTGCAGCTCACTGGGTGGACTAGAGGGAGTCAAGCCTCCTGAGGCGTTTGGAGAGAGGTCGCGAGGTTGGCCTCTAGGCCATGCAGGAGACGAAGGCCCTCATCTCCGCGATGACGGGGGAGTCTCGGAGTGGTTCTCGAGCGGCGGCCCCAGGGTGCGGTTTCTCACGAGGTGCGACGGCGAGGTCAGTGAGCCTCTCGTGGGGCGCCAGGGAAGTCGGGTCTCCATGCGAGTGG                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD156882             [                                                                                                                                                                                                                                                        GTGAGCCTCTCGTGGGGCGCCAGGGAAGTCGGGTCTCCATGCGAGTGGCGAGGGGGAGCGCGTCATTGCTCACGAGCCATGGTAGGGGAATCTGGCCTCGAGACGTGTTGAAGAAGGTCTCTCGAGGTCTTTCCCGGGTTGAGGCAGGAAACCCTGGGTTCCCTCGACTTGTGCAGGTGACCTCAGGGGGCTTCTCGTGGTGGCTCTGAGAAGACAGGGAAACTGGAGGTGGGAGGGGCCTCTCGGGACTCCACTGGGTTTGGTACATTGGAAGAGGGCCTCATCTCCAGTTGAGGCAGGAACCGCAGGGTACCTCTGATTTCAGACTACGATCGCAGGGTCCCTGCAGACTGG]




>consensus_5543#0
CATTCATCTCGAGTGGAAGCAAAGAACCCCGCTCTGCTCTCGAGTCGCGACGGGTATCTC
TTGCAGCTCACTGGGTGGACTAGAGGGAGTCAAGCCTCCTGAGGCGTTTGGAGAGAGGTC
GCGAGGTTGGCCTCTAGGCCATGCAGGAGACGAAGGCCCTCATCTCCGCGATGACGGGGG
AGTCTCGGAGTGGTTCTCGAGCGGCGGCCCCAGGGTGCGGTTTCTCACGAGGTGCGACGG
CGAGGTCAGTGAGCCTCTCGTGGGGCGCCAGGGAAGTCGGGTCTCCATGCGAGTGGCGAG
GGGGAGCGCGTCATTGCTCACGAGCCATGGTAGGGGAATCTGGCCTCGAGACGTGTTGAA
GAAGGTCTCTCGAGGTCTTTCCCGGGTTGAGGCAGGAAACCCTGGGTTCCCTCGACTTGT
GCAGGTGACCTCAGGGGGCTTCTCGTGGTGGCTCTGAGAAGACAGGGAAACTGGAGGTGG
GAGGGGCCTCTCGGGACTCCACTGGGTTTGGTACATTGGAAGAGGGCCTCATCTCCAGTT
GAGGCAGGAACCGCAGGGTACCTCTGATTTCAGACTACGATCGCAGGGTCCCTGCAGACT
GG

consensusID : consensus_5543#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 376
fasta sequence

                              [GTCGCGCCTATGGTCTCTAGGCCATGCAGGAGACGAAGGCCCTCATCTCGCGATGACGGGGGAGTCTTGGGGTTGTTCTCGAGCGGCGGCCCCAGTGTGCCCTTTCTCACGAGGTACGACGGCGAGGTCAGTGAGCCTCTCGTGGGGCGCCAGGGAAGTCGGGTCTCCATGCGAGTGGCGAGGGCGAGCGCGTCATTGCTCTCGAGCCATGGTAGGGTGCCGGGGACCAGCCCCGGTTGATCCAGGGTATTCGAAGGAGAGACGGCGTAGGCGAAGATCAGGAAACCACTGCTTAATTCAATGTTCATTAAGGATATAAAGAGTAATAGAATGAGGATAGCTCAGTGAGGAAATTCAGTGGCTTACAGAGGCTGGA]

[+] EMBL CD152149             [GTCGCGCCTATGGTCTCTAGGCCATGCAGGAGACGAAGGCCCTCATCTCGCGATGACGGGGGAGTCTTGGGGTTGTTCTCGAGCGGCGGCCCCAGTGTGCCCTTTCTCACGAGGTACGACGGCGAGGTCAGTGAGCCTCTCGTGGGGCGCCAGGGAAGTCGGGTCTCCATGCGAGTGGCGAGGGCGAGCGCGTCATTGCTCTCGAGCCATGGTAGGGTGCCGGGGACCAGCCCCGGTTGATCCAGGGTATTCGAAGGAGAGACGGCGTAGGCGAAGATCAGGAAACCACTGCTTAATTCAATGTTCATTAAGGATATAAAGAGTAATAGAATGAGGATAGCTCAGTGAGGAAATTCAGTGGCTTACAGAGGCTGGA]




>consensus_5543#1
GTCGCGCCTATGGTCTCTAGGCCATGCAGGAGACGAAGGCCCTCATCTCGCGATGACGGG
GGAGTCTTGGGGTTGTTCTCGAGCGGCGGCCCCAGTGTGCCCTTTCTCACGAGGTACGAC
GGCGAGGTCAGTGAGCCTCTCGTGGGGCGCCAGGGAAGTCGGGTCTCCATGCGAGTGGCG
AGGGCGAGCGCGTCATTGCTCTCGAGCCATGGTAGGGTGCCGGGGACCAGCCCCGGTTGA
TCCAGGGTATTCGAAGGAGAGACGGCGTAGGCGAAGATCAGGAAACCACTGCTTAATTCA
ATGTTCATTAAGGATATAAAGAGTAATAGAATGAGGATAGCTCAGTGAGGAAATTCAGTG
GCTTACAGAGGCTGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5543#0      CATTCATCTCGAGTGGAAGCAAAGAACCCCGCTCTGCTCTCGAGTCGCGACGGGTATCTC 60
consensus_5543#1      ------------------------------------------------------------
                                                                                  

consensus_5543#0      TTGCAGCTCACTGGGTGGACTAGAGGGAGTCAAGCCTCCTGAGGCGTTTGGAGAGAGGTC 120
consensus_5543#1      ---------------------------------------------------------GTC 3
                                                                               ***

consensus_5543#0      GCGAGGTTGGCCTCTAGGCCATGCAGGAGACGAAGGCCCTCATCTCCGCGATGACGGGGG 180
consensus_5543#1      GCGCCTATGGTCTCTAGGCCATGCAGGAGACGAAGGCCCTCATCTC-GCGATGACGGGGG 62
                      ***    *** *********************************** *************

consensus_5543#0      AGTCTCGGAGTGGTTCTCGAGCGGCGGCCCCAGGGTGCGGTTTCTCACGAGGTGCGACGG 240
consensus_5543#1      AGTCTTGGGGTTGTTCTCGAGCGGCGGCCCCAGTGTGCCCTTTCTCACGAGGTACGACGG 122
                      ***** ** ** ********************* ****  ************* ******

consensus_5543#0      CGAGGTCAGTGAGCCTCTCGTGGGGCGCCAGGGAAGTCGGGTCTCCATGCGAGTGGCGAG 300
consensus_5543#1      CGAGGTCAGTGAGCCTCTCGTGGGGCGCCAGGGAAGTCGGGTCTCCATGCGAGTGGCGAG 182
                      ************************************************************

consensus_5543#0      GGGGAGCGCGTCATTGCTCACGAGCCATGGTAGGGGAATCTGGCCTCGAGACGTGTTGAA 360
consensus_5543#1      GGCGAGCGCGTCATTGCTCTCGAGCCATGGTAGGGTG-CCGGGGACCAGCCCCGGTTGAT 241
                      ** **************** ***************    * **   *    *  ***** 

consensus_5543#0      GAAGGTCTCTCGAGGTCTTTCCCGGGTTGAGGCAGGAAACCCTGGGTTCCCTCGACTTGT 420
consensus_5543#1      CCAGGGTATTCGAAGGAGAGACGGCGT--AGGC--GAAGATCAGGAAACCACTGCTTAAT 297
                        ***    **** *      * * **  ****  ***   * **   **   *  *  *

consensus_5543#0      GCAGGTGACCTCAGGGGGCTTCTCGTGGTGGCTCTGAGAAGACAGGGAAACTGGAGGTGG 480
consensus_5543#1      TCAATGTTCATTAAGGA--TATAAAGAGTAATAGAATGAGGATAGCTCAGTGAGGAAATT 355
                       **     * * * **   *       **        ** ** **   *    *      

consensus_5543#0      GAGGGGCCTCTCGGGACTCCACTGGGTTTGGTACATTGGAAGAGGGCCTCATCTCCAGTT 540
consensus_5543#1      CAGTGGCTTACAGAGGCTGGA--------------------------------------- 376
                       ** *** *   * * **  *                                       

consensus_5543#0      GAGGCAGGAACCGCAGGGTACCTCTGATTTCAGACTACGATCGCAGGGTCCCTGCAGACT 600
consensus_5543#1      ------------------------------------------------------------
                                                                                  

consensus_5543#0      GG 602
consensus_5543#1      --