These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5543#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 602 fasta sequence [CATTCATCTCGAGTGGAAGCAAAGAACCCCGCTCTGCTCTCGAGTCGCGACGGGTATCTCTTGCAGCTCACTGGGTGGACTAGAGGGAGTCAAGCCTCCTGAGGCGTTTGGAGAGAGGTCGCGAGGTTGGCCTCTAGGCCATGCAGGAGACGAAGGCCCTCATCTCCGCGATGACGGGGGAGTCTCGGAGTGGTTCTCGAGCGGCGGCCCCAGGGTGCGGTTTCTCACGAGGTGCGACGGCGAGGTCAGTGAGCCTCTCGTGGGGCGCCAGGGAAGTCGGGTCTCCATGCGAGTGGCGAGGGGGAGCGCGTCATTGCTCACGAGCCATGGTAGGGGAATCTGGCCTCGAGACGTGTTGAAGAAGGTCTCTCGAGGTCTTTCCCGGGTTGAGGCAGGAAACCCTGGGTTCCCTCGACTTGTGCAGGTGACCTCAGGGGGCTTCTCGTGGTGGCTCTGAGAAGACAGGGAAACTGGAGGTGGGAGGGGCCTCTCGGGACTCCACTGGGTTTGGTACATTGGAAGAGGGCCTCATCTCCAGTTGAGGCAGGAACCGCAGGGTACCTCTGATTTCAGACTACGATCGCAGGGTCCCTGCAGACTGG] [+] EMBL CD110887 [CATTCATCTCGAGTGGAAGCAAAGAACCCCGCTCTGCTCTCGAGTCGCGACGGGTATCTCTTGCAGCTCACTGGGTGGACTAGAGGGAGTCAAGCCTCCTGAGGCGTTTGGAGAGAGGTCGCGAGGTTGGCCTCTAGGCCATGCAGGAGACGAAGGCCCTCATCTCCGCGATGACGGGGGAGTCTCGGAGTGGTTCTCGAGCGGCGGCCCCAGGGTGCGGTTTCTCACGAGGTGCGACGGCGAGGTCAGTGAGCCTCTCGTGGGGCGCCAGGGAAGTCGGGTCTCCATGCGAGTGG ] [-] EMBL CD156882 [ GTGAGCCTCTCGTGGGGCGCCAGGGAAGTCGGGTCTCCATGCGAGTGGCGAGGGGGAGCGCGTCATTGCTCACGAGCCATGGTAGGGGAATCTGGCCTCGAGACGTGTTGAAGAAGGTCTCTCGAGGTCTTTCCCGGGTTGAGGCAGGAAACCCTGGGTTCCCTCGACTTGTGCAGGTGACCTCAGGGGGCTTCTCGTGGTGGCTCTGAGAAGACAGGGAAACTGGAGGTGGGAGGGGCCTCTCGGGACTCCACTGGGTTTGGTACATTGGAAGAGGGCCTCATCTCCAGTTGAGGCAGGAACCGCAGGGTACCTCTGATTTCAGACTACGATCGCAGGGTCCCTGCAGACTGG] consensusID : consensus_5543#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence [GTCGCGCCTATGGTCTCTAGGCCATGCAGGAGACGAAGGCCCTCATCTCGCGATGACGGGGGAGTCTTGGGGTTGTTCTCGAGCGGCGGCCCCAGTGTGCCCTTTCTCACGAGGTACGACGGCGAGGTCAGTGAGCCTCTCGTGGGGCGCCAGGGAAGTCGGGTCTCCATGCGAGTGGCGAGGGCGAGCGCGTCATTGCTCTCGAGCCATGGTAGGGTGCCGGGGACCAGCCCCGGTTGATCCAGGGTATTCGAAGGAGAGACGGCGTAGGCGAAGATCAGGAAACCACTGCTTAATTCAATGTTCATTAAGGATATAAAGAGTAATAGAATGAGGATAGCTCAGTGAGGAAATTCAGTGGCTTACAGAGGCTGGA] [+] EMBL CD152149 [GTCGCGCCTATGGTCTCTAGGCCATGCAGGAGACGAAGGCCCTCATCTCGCGATGACGGGGGAGTCTTGGGGTTGTTCTCGAGCGGCGGCCCCAGTGTGCCCTTTCTCACGAGGTACGACGGCGAGGTCAGTGAGCCTCTCGTGGGGCGCCAGGGAAGTCGGGTCTCCATGCGAGTGGCGAGGGCGAGCGCGTCATTGCTCTCGAGCCATGGTAGGGTGCCGGGGACCAGCCCCGGTTGATCCAGGGTATTCGAAGGAGAGACGGCGTAGGCGAAGATCAGGAAACCACTGCTTAATTCAATGTTCATTAAGGATATAAAGAGTAATAGAATGAGGATAGCTCAGTGAGGAAATTCAGTGGCTTACAGAGGCTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5543#0 CATTCATCTCGAGTGGAAGCAAAGAACCCCGCTCTGCTCTCGAGTCGCGACGGGTATCTC 60 consensus_5543#1 ------------------------------------------------------------ consensus_5543#0 TTGCAGCTCACTGGGTGGACTAGAGGGAGTCAAGCCTCCTGAGGCGTTTGGAGAGAGGTC 120 consensus_5543#1 ---------------------------------------------------------GTC 3 *** consensus_5543#0 GCGAGGTTGGCCTCTAGGCCATGCAGGAGACGAAGGCCCTCATCTCCGCGATGACGGGGG 180 consensus_5543#1 GCGCCTATGGTCTCTAGGCCATGCAGGAGACGAAGGCCCTCATCTC-GCGATGACGGGGG 62 *** *** *********************************** ************* consensus_5543#0 AGTCTCGGAGTGGTTCTCGAGCGGCGGCCCCAGGGTGCGGTTTCTCACGAGGTGCGACGG 240 consensus_5543#1 AGTCTTGGGGTTGTTCTCGAGCGGCGGCCCCAGTGTGCCCTTTCTCACGAGGTACGACGG 122 ***** ** ** ********************* **** ************* ****** consensus_5543#0 CGAGGTCAGTGAGCCTCTCGTGGGGCGCCAGGGAAGTCGGGTCTCCATGCGAGTGGCGAG 300 consensus_5543#1 CGAGGTCAGTGAGCCTCTCGTGGGGCGCCAGGGAAGTCGGGTCTCCATGCGAGTGGCGAG 182 ************************************************************ consensus_5543#0 GGGGAGCGCGTCATTGCTCACGAGCCATGGTAGGGGAATCTGGCCTCGAGACGTGTTGAA 360 consensus_5543#1 GGCGAGCGCGTCATTGCTCTCGAGCCATGGTAGGGTG-CCGGGGACCAGCCCCGGTTGAT 241 ** **************** *************** * ** * * ***** consensus_5543#0 GAAGGTCTCTCGAGGTCTTTCCCGGGTTGAGGCAGGAAACCCTGGGTTCCCTCGACTTGT 420 consensus_5543#1 CCAGGGTATTCGAAGGAGAGACGGCGT--AGGC--GAAGATCAGGAAACCACTGCTTAAT 297 *** **** * * * ** **** *** * ** ** * * * consensus_5543#0 GCAGGTGACCTCAGGGGGCTTCTCGTGGTGGCTCTGAGAAGACAGGGAAACTGGAGGTGG 480 consensus_5543#1 TCAATGTTCATTAAGGA--TATAAAGAGTAATAGAATGAGGATAGCTCAGTGAGGAAATT 355 ** * * * ** * ** ** ** ** * * consensus_5543#0 GAGGGGCCTCTCGGGACTCCACTGGGTTTGGTACATTGGAAGAGGGCCTCATCTCCAGTT 540 consensus_5543#1 CAGTGGCTTACAGAGGCTGGA--------------------------------------- 376 ** *** * * * ** * consensus_5543#0 GAGGCAGGAACCGCAGGGTACCTCTGATTTCAGACTACGATCGCAGGGTCCCTGCAGACT 600 consensus_5543#1 ------------------------------------------------------------ consensus_5543#0 GG 602 consensus_5543#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||