cluster # 5545

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Schistosoma mansoni
cluster # 5545 cluster # 5545 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5545#0 length = 515 sequences # 2

consensus_5545#1 length = 177 sequences # 1

consensusID : consensus_5545#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 515
fasta sequence

                              [CAATTTCAAACATGAACGCCTTGTGCTTCGCTTCTGCTGTTTGGAGGTTAGGGTCTCGAAGATATGTATTTCCGCGGAATATTTTACACACTTTTTCTGTATCCAATAACATTTTGGGAAATAAACCGTCTGCATACCCATGTCTAACTCAAACGCGTTCGATAAGAATCCTGCTGTCTAAACCTGAGGTGGAAAGTAAAGTATTAGCTGTCTGTTCTGCGTACGATAAAATCCAGTCCGATAAGCTTACGCTTGATTCCTCGTTTATCAAAGATCTCGGTCTTGATAGTCTGGACCACATAGAAGTAATTATGGAAATCGAAAATGAATTCCGGTTTGAAATAAGTGACGTGGATGCTGAGAAAATGCACACACCCCGTGATATTGTGGAACATGTGTATCATTCAATAACGAAAGCAGAACCTGCAAAATAAGATACTGGTGAAGTAATAAAACATTTCCAATTAATTACTAAAAACCTCTAGACAGTATATTTATTGTAGATATTGTTCCCC]

[+] EMBL CD180830             [CAATTTCAAACATGAACGCCTTGTGCTTCGCTTCTGCTGTTTGGAGGTTAGGGTCTCGAAGATATGTATTTCCGCGGAATATTTTACACACTTTTTCTGTATCCAATAACATTTTGGGAAATAAACCGTCTGCATACCCATGTCTAACTCAAACGCGTTCGATAAGAATCCTGCTGTCTAAACCTGAGGTGGAAAGTAAAGTATTAGCTGTCTGTTCTGCGTACGATAAAATCCAGTCCGATAAGCTTACGCTTGATTCCTCGTTTATCAAAGATCTCGGTCTTGATAGTCTGGACCACATAGAAGTAATTATGGAAATCGAAAATGAATTCCGGTTTGAAATAAGTGACGTGGATGCTGAGAAAATGCACACACCCCGTGATATTGTGGAACATGTGTATCATTCAATAACGAAAGCAGAACCTGCA                                                                                       ]
[+] EMBL BE431252             [                                                                                                                                                                                                                                                                                                                                        ATTCCGGTTTGAAGTAAGTGACGTGGATGCTGAGAAAATGCACACACCCCGTGATATTGTGGAACATGTGTATCATTCAATAACGAAAGCAGAACCTGCAAAATAAGATACTGGTGAAGTAATAAAACATTTCCAATTAATTACTAAAAACCTCTAGACAGTATATTTATTGTAGATATTGTTCCCC]




>consensus_5545#0
CAATTTCAAACATGAACGCCTTGTGCTTCGCTTCTGCTGTTTGGAGGTTAGGGTCTCGAA
GATATGTATTTCCGCGGAATATTTTACACACTTTTTCTGTATCCAATAACATTTTGGGAA
ATAAACCGTCTGCATACCCATGTCTAACTCAAACGCGTTCGATAAGAATCCTGCTGTCTA
AACCTGAGGTGGAAAGTAAAGTATTAGCTGTCTGTTCTGCGTACGATAAAATCCAGTCCG
ATAAGCTTACGCTTGATTCCTCGTTTATCAAAGATCTCGGTCTTGATAGTCTGGACCACA
TAGAAGTAATTATGGAAATCGAAAATGAATTCCGGTTTGAAATAAGTGACGTGGATGCTG
AGAAAATGCACACACCCCGTGATATTGTGGAACATGTGTATCATTCAATAACGAAAGCAG
AACCTGCAAAATAAGATACTGGTGAAGTAATAAAACATTTCCAATTAATTACTAAAAACC
TCTAGACAGTATATTTATTGTAGATATTGTTCCCC

consensusID : consensus_5545#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 177
fasta sequence

                              [TTCGCTTCTGCTGTTTGGAGGTTAGGGTCTCGTAAGATATGTATTTCCGCGGTAATATTTTACACACTTTTTCCGTATCCAATTACATTTTGGGGAATAAACCGTCTGCCATACCCAAGTCTTAACTCCAACGCGTTCGATAAGAATCCGCCGGTCCAAACCTGAGGTGCCAGTTAA]

[+] EMBL AW146491             [TTCGCTTCTGCTGTTTGGAGGTTAGGGTCTCGTAAGATATGTATTTCCGCGGTAATATTTTACACACTTTTTCCGTATCCAATTACATTTTGGGGAATAAACCGTCTGCCATACCCAAGTCTTAACTCCAACGCGTTCGATAAGAATCCGCCGGTCCAAACCTGAGGTGCCAGTTAA]




>consensus_5545#1
TTCGCTTCTGCTGTTTGGAGGTTAGGGTCTCGTAAGATATGTATTTCCGCGGTAATATTT
TACACACTTTTTCCGTATCCAATTACATTTTGGGGAATAAACCGTCTGCCATACCCAAGT
CTTAACTCCAACGCGTTCGATAAGAATCCGCCGGTCCAAACCTGAGGTGCCAGTTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5545#0      CAATTTCAAACATGAACGCCTTGTGCTTCGCTTCTGCTGTTTGGAGGTTAGGGTCTCG-A 59
consensus_5545#1      --------------------------TTCGCTTCTGCTGTTTGGAGGTTAGGGTCTCGTA 34
                                                ******************************** *

consensus_5545#0      AGATATGTATTTCCGCGG-AATATTTTACACACTTTTTCTGTATCCAATAACATTTTGGG 118
consensus_5545#1      AGATATGTATTTCCGCGGTAATATTTTACACACTTTTTCCGTATCCAATTACATTTTGGG 94
                      ****************** ******************** ********* **********

consensus_5545#0      AAATAAACCGTCTGC-ATACCCATGTCT-AACTCAAACGCGTTCGATAAGAATCCTGCTG 176
consensus_5545#1      GAATAAACCGTCTGCCATACCCAAGTCTTAACTCCAACGCGTTCGATAAGAATCCGCCGG 154
                       ************** ******* **** ***** ********************  * *

consensus_5545#0      TCTAAACCTGAGGTGGAAAGTAAAGTATTAGCTGTCTGTTCTGCGTACGATAAAATCCAG 236
consensus_5545#1      TCCAAACCTGAGGTGCCAGTTAA------------------------------------- 177
                      ** ************  *  ***                                     

consensus_5545#0      TCCGATAAGCTTACGCTTGATTCCTCGTTTATCAAAGATCTCGGTCTTGATAGTCTGGAC 296
consensus_5545#1      ------------------------------------------------------------
                                                                                  

consensus_5545#0      CACATAGAAGTAATTATGGAAATCGAAAATGAATTCCGGTTTGAAATAAGTGACGTGGAT 356
consensus_5545#1      ------------------------------------------------------------
                                                                                  

consensus_5545#0      GCTGAGAAAATGCACACACCCCGTGATATTGTGGAACATGTGTATCATTCAATAACGAAA 416
consensus_5545#1      ------------------------------------------------------------
                                                                                  

consensus_5545#0      GCAGAACCTGCAAAATAAGATACTGGTGAAGTAATAAAACATTTCCAATTAATTACTAAA 476
consensus_5545#1      ------------------------------------------------------------
                                                                                  

consensus_5545#0      AACCTCTAGACAGTATATTTATTGTAGATATTGTTCCCC 515
consensus_5545#1      ---------------------------------------