cluster # 5546

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Schistosoma mansoni
cluster # 5546 cluster # 5546 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5546#0 length = 468 sequences # 1

consensus_5546#1 length = 390 sequences # 2

consensusID : consensus_5546#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 468
fasta sequence

                              [ATGGCGCGAGTATTGAGATTTTTCACCGCCAGACAGATTCATCTGACAGCTGGTCTTCAAGCTGGAGGATTATTTAGGGCTAGGTTTGTCCACATTGCATAAACTTTTGATTAAAAGACGTCGCCTACCTCCCAGTAACAACGAATGGGGACCATTAACCGATTTGCCTGACTACACTGTCATAGGCTAACCCTCAATTTACAAGCCAAGGGCAAAGACGACGAGCTATTCAGCAATACAAAGTATCTGTAAGTCATTGAATTTGTGTAGATGCAACATCTTATCATGTAGACGAAAATAATCCAATTGATTGGCGAAATGAAAGAAACTCAAGAAAAGTATGTTAAAAATATGGAAATGGAGGAGATCAATACCAAAATATTAAAACAGCAGTGTCTTCGAGAGAAAGGGAATCGAAGTGCATAAATANTTTCGTTGACATTGGCAGTTTATAAATATAACTACAAA]

[+] EMBL CD080040             [ATGGCGCGAGTATTGAGATTTTTCACCGCCAGACAGATTCATCTGACAGCTGGTCTTCAAGCTGGAGGATTATTTAGGGCTAGGTTTGTCCACATTGCATAAACTTTTGATTAAAAGACGTCGCCTACCTCCCAGTAACAACGAATGGGGACCATTAACCGATTTGCCTGACTACACTGTCATAGGCTAACCCTCAATTTACAAGCCAAGGGCAAAGACGACGAGCTATTCAGCAATACAAAGTATCTGTAAGTCATTGAATTTGTGTAGATGCAACATCTTATCATGTAGACGAAAATAATCCAATTGATTGGCGAAATGAAAGAAACTCAAGAAAAGTATGTTAAAAATATGGAAATGGAGGAGATCAATACCAAAATATTAAAACAGCAGTGTCTTCGAGAGAAAGGGAATCGAAGTGCATAAATANTTTCGTTGACATTGGCAGTTTATAAATATAACTACAAA]




>consensus_5546#0
ATGGCGCGAGTATTGAGATTTTTCACCGCCAGACAGATTCATCTGACAGCTGGTCTTCAA
GCTGGAGGATTATTTAGGGCTAGGTTTGTCCACATTGCATAAACTTTTGATTAAAAGACG
TCGCCTACCTCCCAGTAACAACGAATGGGGACCATTAACCGATTTGCCTGACTACACTGT
CATAGGCTAACCCTCAATTTACAAGCCAAGGGCAAAGACGACGAGCTATTCAGCAATACA
AAGTATCTGTAAGTCATTGAATTTGTGTAGATGCAACATCTTATCATGTAGACGAAAATA
ATCCAATTGATTGGCGAAATGAAAGAAACTCAAGAAAAGTATGTTAAAAATATGGAAATG
GAGGAGATCAATACCAAAATATTAAAACAGCAGTGTCTTCGAGAGAAAGGGAATCGAAGT
GCATAAATANTTTCGTTGACATTGGCAGTTTATAAATATAACTACAAA

consensusID : consensus_5546#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 390
fasta sequence

                              [GAGTATTGAGATTTTTCACCGCCAGACAGATTCATCTGACAGCTGGTCTTCAAGCTGGAGGATTATTTAGGGGTAGACGTCGCCTACCTCCCAGTAACAACGAATGGGGACCATTAACCGATTTGCCTGACTACACTGTCATAGGAAAGGCTAACCCTCAATTTACAAGCCAAGGGCAAAGACGACGAGCTATTCAGCAATACAAAGTATCTACGAAAATAATCCAATTGATTGGCGAAATGAAAGAAACTCAAGAAAAGTATGTTAAAAATATGGAAATGGAGGAGATCAATACCAAAATATTAAAACAGCAGTGTTTTCGAGAGAAAGGGAATCGAAGTGCATAAATATTTCGTTGACATTGGCAGTTTATAAATATAACTACAAATT]

[-] EMBL CD077250             [GAGTATTGAGATTTTTCACCGCCAGACAGATTCATCTGACAGCTGGTCTTCAAGCTGGAGGATTATTTAGGGGTAGACGTCGCCTACCTCCCAGTAACAACGAATGGGGACCATTAACCGATTTGCCTGACTACACTGTCATAGGAAAGGCTAACCCTCAATTTACAAGCCAAGGGCAAAGACGACGAGCTATTCAGCAATACAAAGTATCTACGAAAATAATCCAATTGATTGGCGAAATGAAAGAAACTCAAGAAAAGTATGTTAAAAATATGGAAATGGAGGAGATCAATACCAAAATATTAAAACAGCAGTGTTTTCGAGAGAAAGGGAATCGAAGTGCATAAATATTTCGTTGACATTGGCAGTTTATAAATATAACTACAAATT]
[+] EMBL CD190978             [             TTTCACCGCCAGACAGATTCATCTGACAGCTGGTCTTCAAGCTGGAGGATTATTTAGGGCTAGACGTCGCCTACCTCCCAGTAACAACGAATGGGGACCATTAACCGATTTGCCTGACTACACTGTCATAGGAAAGGCTAACC                                                                                                                                                                                                                                          ]




>consensus_5546#1
GAGTATTGAGATTTTTCACCGCCAGACAGATTCATCTGACAGCTGGTCTTCAAGCTGGAG
GATTATTTAGGGGTAGACGTCGCCTACCTCCCAGTAACAACGAATGGGGACCATTAACCG
ATTTGCCTGACTACACTGTCATAGGAAAGGCTAACCCTCAATTTACAAGCCAAGGGCAAA
GACGACGAGCTATTCAGCAATACAAAGTATCTACGAAAATAATCCAATTGATTGGCGAAA
TGAAAGAAACTCAAGAAAAGTATGTTAAAAATATGGAAATGGAGGAGATCAATACCAAAA
TATTAAAACAGCAGTGTTTTCGAGAGAAAGGGAATCGAAGTGCATAAATATTTCGTTGAC
ATTGGCAGTTTATAAATATAACTACAAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5546#0      ATGGCGCGAGTATTGAGATTTTTCACCGCCAGACAGATTCATCTGACAGCTGGTCTTCAA 60
consensus_5546#1      -------GAGTATTGAGATTTTTCACCGCCAGACAGATTCATCTGACAGCTGGTCTTCAA 53
                             *****************************************************

consensus_5546#0      GCTGGAGGATTATTTAGGGCTAGGTTTGTCCACATTGCATAAACTTTTGATTAAAAGACG 120
consensus_5546#1      GCTGGAGGATTATTTAGGGGTAG----------------------------------ACG 79
                      ******************* ***                                  ***

consensus_5546#0      TCGCCTACCTCCCAGTAACAACGAATGGGGACCATTAACCGATTTGCCTGACTACACTGT 180
consensus_5546#1      TCGCCTACCTCCCAGTAACAACGAATGGGGACCATTAACCGATTTGCCTGACTACACTGT 139
                      ************************************************************

consensus_5546#0      CATAGG-----CTAACCCTCAATTTACAAGCCAAGGGCAAAGACGACGAGCTATTCAGCA 235
consensus_5546#1      CATAGGAAAGGCTAACCCTCAATTTACAAGCCAAGGGCAAAGACGACGAGCTATTCAGCA 199
                      ******     *************************************************

consensus_5546#0      ATACAAAGTATCTGTAAGTCATTGAATTTGTGTAGATGCAACATCTTATCATGTAGACGA 295
consensus_5546#1      ATACAAAGTATCT-------------------------------------------ACGA 216
                      *************                                           ****

consensus_5546#0      AAATAATCCAATTGATTGGCGAAATGAAAGAAACTCAAGAAAAGTATGTTAAAAATATGG 355
consensus_5546#1      AAATAATCCAATTGATTGGCGAAATGAAAGAAACTCAAGAAAAGTATGTTAAAAATATGG 276
                      ************************************************************

consensus_5546#0      AAATGGAGGAGATCAATACCAAAATATTAAAACAGCAGTGTCTTCGAGAGAAAGGGAATC 415
consensus_5546#1      AAATGGAGGAGATCAATACCAAAATATTAAAACAGCAGTGTTTTCGAGAGAAAGGGAATC 336
                      ***************************************** ******************

consensus_5546#0      GAAGTGCATAAATANTTTCGTTGACATTGGCAGTTTATAAATATAACTACAAA-- 468
consensus_5546#1      GAAGTGCATAAATATTT-CGTTGACATTGGCAGTTTATAAATATAACTACAAATT 390
                      ************** ** ***********************************