These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5550#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence [TTACAACGATCAAATAAAAACGAATCATTAATATAAATGAGTGATTAGTGACAAAGGCACTTTACAATTCACTTGACCAAATATATGTTAACTCAACACTATATCGTTTATGTAACATGTTGTATGTGGAGTGTCGGCTACCGCAAAACTGGATGAAATTACTGAGGCACATTTTATTCTTGTTTGATGTCATCAACTTGAATTTGTCCATAAGTTACAAAATTTCCTGCGTTTTATCAAGTTAATGATAATCAGTGACTTGGAGGTGTAAATGTTTGGCTTGTAATCAATGAATTTCGAATTTAAATATAATAAAGCCAATTTCAGTTTAATAAAACAACCTAACGCTGTTATTAATTAAATGCAATTAATAGTATTACTACCACTTATCGCTATAACTAAATGAATAAGATTAATAAACAACATACTGTGTAGATTGTGGGTTTTCGATCCATGAACGAAGTGATTCCAAGACAGTGTAAAATACCGACTTCCACATACCTTGTTCAA] [+] EMBL CD202029 [TTACAACGATCAAATAAAAACGAATCATTAATATAAATGAGTGATTAGTGACAAAGGCACTTTACAATTCACTTGACCAAATATATGTTAACTCAACACTATATCGTTTATGTAACATGTTGTATGTGGAGTGTCGGCTACCGCAAAACTGGATGAAATTACTGAGGCACATTTTATTCTTGTTTGATGTCATCAACTTGAATTTGTCCATAAGTTACAAAATTTCCTGCGTTTTATCAAGTTAATGATAATCAGTGACTTGGAGGTGTAAATGTTTGGCTTGTAATCAATGAATTTCGAATTTAAATATAATAAAGCCAATTTCAGTTTAATAAAACAACCTAACGCTGTTATTAATTAAATGCAATTAATAGTATTACTACCACTTATCGCTATAACTAAATGAATAAGATTAATAAACAACATACTGTGTAGATTGTGGGTTTTCGATCCATGAACGAAGTGATTCCAAGACAGTGTAAAATACCGACTTCCACATACCTTGTTCAA] consensusID : consensus_5550#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 443 fasta sequence [TGAAGCGACTTCGTGATAGTTTATTTTTACTATTTGAAAGTGTAATAGTTGCAGACTTGGACTTTTGTAATACGGCACATGTTGAACAAGGCATGTGGAAGTCGGTATTTTACACTGTCTTGGAATCACTTCGTTCATGGATCGAAAACCCACAATCTACACAGTTAATCCCTAAAGTAGATAAGAATGAAGAGACTACAAAACTTCTCCAAAGTCAATTAGTTAACCTTATTCAAAAAATTTGTATATCTGAAGTGATTGATTTTGGATCAAATCAATTAGCCTCTCTACTTGAACGTATACAAAGCATACACCACATTCAACTTGGTCCATTATTATCAGATGGTAGACCACCTCCAGAAACGAAATCAAGAACTCGACGATTAGTCTATTTAAGTGCTCAAAAATTAATGTTATTCCTTGGTGATTTAGCTCGTTACAGG] [+] EMBL CD180787 [TGAAGCGACTTCGTGATAGTTTATTTTTACTATTTGAAAGTGTAATAGTTGCAGACTTGGACTTTTGTAATACGGCACATGTTGAACAAGGCATGTGGAAGTCGGTATTTTACACTGTCTTGGAATCACTTCGTTCATGGATCGAAAACCCACAATCTACACAGTTAATCCCTAAAGTAGATAAGAATGAAGAGACTACAAAACTTCTCCAAAGTCAATTAGTTAACCTTATTCAAAAAATTTGTATATCTGAAGTGATTGATTTTGGATCAAATCAATTAGCCTCTCTACTTGAACGTATACAAAGCATACACCACATTCAACTTGGTCCATTATTATCAGATGGTAGACCACCTCCAGAAACGAAATCAAGAACTCGACGATTAGTCTATTTAAGTGCTCAAAAATTAATGTTATTCCTTGGTGATTTAGCTCGTTACAGG] [+] EMBL CD193869 [ GAACAAGGTATGTGGAAGTCGGTATTTTACACTGTCTTGGAATCACTTCGTTCATGGATCGAAAACCCACAATCTACACAGTTAATTCCTAAGGTAGATAAGAATGAAGAGACTACAAAACTTCTCCAAAGTCAATTAGTTAACCTTATTCAAAAAATTTGTATATCTGAAGTGATTGATTTTGGATCAAATCAATTAGCCTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5550#0 TTACAACGATCAAATAAAAACGAATCATTAATATAAATGAGTGATTAGTGACAAAGGCAC 60 consensus_5550#1 -TGAAGCGACTTCGTGATAGTTTATTTTTACTATTTGAAAGT-----GTAATAGTTGCAG 54 * * *** * * * ** *** *** *** ** * * *** consensus_5550#0 TTTACAATTCACTTGACCAAATATATGTT-AACTCAACACTATATCGTTTATGTAACATG 119 consensus_5550#1 ACTTGGACTTTTGTAATACGGCACATGTTGAACAAGGCATGTGGAAGTCGGTATTTTACA 114 * * * * * * ***** *** ** ** * * * consensus_5550#0 TTGTATGTGGAGTGTCGGCTACCGCAAAACTGGATGAAATTACTGAGGCACATTTTATTC 179 consensus_5550#1 CTGTCT-TGGAAT------CACTTCGTTCATGGATCGAA-----AACCCACAATCTACAC 162 *** * **** * ** * ***** ** * **** * ** * consensus_5550#0 TTGTTTGATGTCATCAACTTGAATTTGTCCATAAGTTACAAAATTTCCTGCGTTTTATCA 239 consensus_5550#1 --AGTTAATCCCTAAAGTAGATAAGAATGAAGAGACTACAAAACTTCTCCAAAGTCAATT 220 ** ** * * * * * * ******* *** * * consensus_5550#0 AGTTAATGATAATCAGTGACTTGGAGGTGTAAATGTTTGGCTTGTAATCAATGAATTTCG 299 consensus_5550#1 AGTTAACCTTATTCAA-------AAAATTTGTATATCTG------AAGTGATTGATTTTG 267 ****** ** *** * * * ** * ** ** ** **** * consensus_5550#0 AATTTAAATATAATAAAGCCAATTTCAGTTTAATAAAACAACCTAACGCTGTTATTAATT 359 consensus_5550#1 GATC-AAAT-CAATTAGCC---TCTCTACTTGAACGTATA---CAAAGC----ATACACC 315 ** **** *** * * * ** ** * * * ** ** ** * consensus_5550#0 AAATGCAATTAATAGTATTACTACCACTTATCGCTATAACTAAATGAATAAGATTAATAA 419 consensus_5550#1 ACATTCAACTTGGTCCATTATTATCAGATGGTAGACCACCTCCAGAAACGAAATCAA-GA 374 * ** *** * **** ** ** * * ** * ** * ** ** * consensus_5550#0 ACAACATACTGTGTAGATTGTGGGTTTTCGATCCATGAACGAAGTGATTCCAAGACAGTG 479 consensus_5550#1 ACTCGACGATTAGTCTATT-TAAGTGCTCAAAA-ATTAATGTTATTCCTTGGTGATTTAG 432 ** * * ** *** * ** ** * ** ** * * * ** * consensus_5550#0 TAAAATACCGACTTCCACATACCTTGTTCAA 510 consensus_5550#1 CTCGTTACAGG-------------------- 443 *** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||