cluster # 5551

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Schistosoma mansoni
cluster # 5551 cluster # 5551 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5551#0 length = 584 sequences # 2

consensus_5551#1 length = 420 sequences # 1

consensusID : consensus_5551#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 584
fasta sequence

                              [TGGAAGGTGTAGATGAGGTCTTTTTGTTTCCATAGGAATCAGATGAATTTTGAGACTGATTATTGTGTGAGACGTCACAACCAGGAGAGGCATGCATTTCTGTCGCATAAGAAGCCATAACGGTATGCCAACTTACATTTGCCTACAGAGATATTGGATGACTTCAGAATTCAATCAAAACATAGAGCAAAAAGGAATAAAAATGGCAACAAAGGTTCAAAATGCATGCAATCAAAGAGATAAAGAAATTATCACAGAAAACTGGACTTATGTATGGGAAAAATGGCTAAGTATCTTTAGAGTATCTTAGTTATTGTAATGACGTGAGTGGGTCATAGGTATCGCGTGAAGAAATAAGGCAATTGGAAGGAATCATCTGGCAAAGTTGTTAACTAATACGTTTTATGTATAGAGAATCGAAAGAACCTTGACTAGGTTGTCAGGGTAATCGAGAGTACACAAGTTAACTCATTTGGGTCGTGATT-AAAAAACAATTGTATGGACATAGTTATTGATAGTAAATTCATTGGACTGTAGCGGTTAATTTTATTTGCTGCAACTCAGCAACAAAAGCCAGTCTGGTA]

[+] EMBL CD178378             [TGGAAGGTGTAGATGAGGTCTTTTTGTTTCCATAGGAATCAGATGAATTTTGAGACTGATTATTGTGTGAGACGTCACAACCAGGAGAGGCATGCATTTCTGTCGCATAAGAAGCCATAACGGTATGCCAACTTACATTTGCCTACAGAGATATTGGATGACTTCAGAATTCAATCAAAACATAGAGCAAAAAGGAATAAAAATGGCAACAAAGGTTCAAAATGCATGCAATCAAAGAGATAAAGAAATTATCACAGAAAACTGGACTTATGTATGGGAAAAATGGCTAAGTATCTTTAGAGTATCTTAGTTATTGTAATGACGTGAGTGGGTCATAGGTATCGCGTGAAGAAATAAGGCAATTGGAAGGAATCATCTGGCAAAGTTGTTAACTAATACGTTTTATGTATAGAGAATCGAAAGAACCTTGACTAGGTTGTCAGGGTAATCGAGAGTACACAAGTTAACTCATTTGGGTCGTGATT AAAAAACAATTGTATGGACATAGTTATTGATAGTAAATTCATTGGACTGTAGCGGTTAATTTTATTTGCTGCAACTCAGCAACAAAAGC          ]
[+] EMBL CD167831             [                      TTTGTTTCCATAGGAATCAGATGAATTTTGAGACTGATTATTGTGTGAGACGTCACAACCAGGAGAGGCATGCATTTCTGTCGCATAAGAAGCCATAACGGTATGCTAACTTACATTTGCCTACAGAGATATTGGATGACTTCAGAATTCAATCAAAACATAGAGCAAAAAGGAATAAAAATGGCAACAAAGGTTCAAAATGCATGCAATCAAAGAGATAAAGAAATTATCACAGAAAACTGGACTTATGTATGGGAAAAATGGCTAAGTATCTTTAGAGTATCTTAGTTATTGTAATGACGTGAGTGGGTCATAGGTATCGCGTGAAGAAATAAGGCAATTGGAAGGAATCATCTGGCAAAGTTGTTAACTAATACGTTTTATGTATAGAGAATCGAAAGAACCTTGACTAGGTTGTCAGGGTAATCGAGAGTACACAAGTTAACTCATTTGGGTCGTGATTAAAAAAACAATTGTATGGACATAGTTATTGATAGTAAATTCATTGGACTGTAGCGGTTAATTTTATTTGCTGCAACTCAGCAACAAAAACCAGTCTGGTA]




>consensus_5551#0
TGGAAGGTGTAGATGAGGTCTTTTTGTTTCCATAGGAATCAGATGAATTTTGAGACTGAT
TATTGTGTGAGACGTCACAACCAGGAGAGGCATGCATTTCTGTCGCATAAGAAGCCATAA
CGGTATGCCAACTTACATTTGCCTACAGAGATATTGGATGACTTCAGAATTCAATCAAAA
CATAGAGCAAAAAGGAATAAAAATGGCAACAAAGGTTCAAAATGCATGCAATCAAAGAGA
TAAAGAAATTATCACAGAAAACTGGACTTATGTATGGGAAAAATGGCTAAGTATCTTTAG
AGTATCTTAGTTATTGTAATGACGTGAGTGGGTCATAGGTATCGCGTGAAGAAATAAGGC
AATTGGAAGGAATCATCTGGCAAAGTTGTTAACTAATACGTTTTATGTATAGAGAATCGA
AAGAACCTTGACTAGGTTGTCAGGGTAATCGAGAGTACACAAGTTAACTCATTTGGGTCG
TGATTAAAAAACAATTGTATGGACATAGTTATTGATAGTAAATTCATTGGACTGTAGCGG
TTAATTTTATTTGCTGCAACTCAGCAACAAAAGCCAGTCTGGTA

consensusID : consensus_5551#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence

                              [CTAAATGTGTAGATGAGGTCTTTTTGTTTCCATAGGAATCAGATGAATTTTGAGACTGATTATTGTGTGAGACGTCACAACCAGGAGAGGCATGCATTTATTTGCCTACAGAGATATTGGATGACTTCAGAATTCAATCAAAACATAGAGCAAAAAGGAATAAAAATGGCAACAAAGGTTCAAAATGCATGCAATCAAAGAGATAAAGAAATTATCACAGAAAACTGGACTTATGTATGGGAAAAATGGCTAAGTATCTTTAGAGTATCTTAGTTATTGTAATGACGTGAGTGGGTCATAGGTATCGCGTGAAGAAATAAGGCAGTTGGAAGGAATCATCTGGCAAAGTTGTTAACTAATACGTTTTATGTATAGAGAATCGAAAGAACCTTGACTAGGTTGTCAGGGTAATCGAGAGTA]

[+] EMBL CD063020             [CTAAATGTGTAGATGAGGTCTTTTTGTTTCCATAGGAATCAGATGAATTTTGAGACTGATTATTGTGTGAGACGTCACAACCAGGAGAGGCATGCATTTATTTGCCTACAGAGATATTGGATGACTTCAGAATTCAATCAAAACATAGAGCAAAAAGGAATAAAAATGGCAACAAAGGTTCAAAATGCATGCAATCAAAGAGATAAAGAAATTATCACAGAAAACTGGACTTATGTATGGGAAAAATGGCTAAGTATCTTTAGAGTATCTTAGTTATTGTAATGACGTGAGTGGGTCATAGGTATCGCGTGAAGAAATAAGGCAGTTGGAAGGAATCATCTGGCAAAGTTGTTAACTAATACGTTTTATGTATAGAGAATCGAAAGAACCTTGACTAGGTTGTCAGGGTAATCGAGAGTA]




>consensus_5551#1
CTAAATGTGTAGATGAGGTCTTTTTGTTTCCATAGGAATCAGATGAATTTTGAGACTGAT
TATTGTGTGAGACGTCACAACCAGGAGAGGCATGCATTTATTTGCCTACAGAGATATTGG
ATGACTTCAGAATTCAATCAAAACATAGAGCAAAAAGGAATAAAAATGGCAACAAAGGTT
CAAAATGCATGCAATCAAAGAGATAAAGAAATTATCACAGAAAACTGGACTTATGTATGG
GAAAAATGGCTAAGTATCTTTAGAGTATCTTAGTTATTGTAATGACGTGAGTGGGTCATA
GGTATCGCGTGAAGAAATAAGGCAGTTGGAAGGAATCATCTGGCAAAGTTGTTAACTAAT
ACGTTTTATGTATAGAGAATCGAAAGAACCTTGACTAGGTTGTCAGGGTAATCGAGAGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5551#0      TGGAAGGTGTAGATGAGGTCTTTTTGTTTCCATAGGAATCAGATGAATTTTGAGACTGAT 60
consensus_5551#1      CTAAATGTGTAGATGAGGTCTTTTTGTTTCCATAGGAATCAGATGAATTTTGAGACTGAT 60
                         ** ******************************************************

consensus_5551#0      TATTGTGTGAGACGTCACAACCAGGAGAGGCATGCATTTCTGTCGCATAAGAAGCCATAA 120
consensus_5551#1      TATTGTGTGAGACGTCACAACCAGGAGAGGCATGCATTT--------------------- 99
                      ***************************************                     

consensus_5551#0      CGGTATGCCAACTTACATTTGCCTACAGAGATATTGGATGACTTCAGAATTCAATCAAAA 180
consensus_5551#1      ----------------ATTTGCCTACAGAGATATTGGATGACTTCAGAATTCAATCAAAA 143
                                      ********************************************

consensus_5551#0      CATAGAGCAAAAAGGAATAAAAATGGCAACAAAGGTTCAAAATGCATGCAATCAAAGAGA 240
consensus_5551#1      CATAGAGCAAAAAGGAATAAAAATGGCAACAAAGGTTCAAAATGCATGCAATCAAAGAGA 203
                      ************************************************************

consensus_5551#0      TAAAGAAATTATCACAGAAAACTGGACTTATGTATGGGAAAAATGGCTAAGTATCTTTAG 300
consensus_5551#1      TAAAGAAATTATCACAGAAAACTGGACTTATGTATGGGAAAAATGGCTAAGTATCTTTAG 263
                      ************************************************************

consensus_5551#0      AGTATCTTAGTTATTGTAATGACGTGAGTGGGTCATAGGTATCGCGTGAAGAAATAAGGC 360
consensus_5551#1      AGTATCTTAGTTATTGTAATGACGTGAGTGGGTCATAGGTATCGCGTGAAGAAATAAGGC 323
                      ************************************************************

consensus_5551#0      AATTGGAAGGAATCATCTGGCAAAGTTGTTAACTAATACGTTTTATGTATAGAGAATCGA 420
consensus_5551#1      AGTTGGAAGGAATCATCTGGCAAAGTTGTTAACTAATACGTTTTATGTATAGAGAATCGA 383
                      * **********************************************************

consensus_5551#0      AAGAACCTTGACTAGGTTGTCAGGGTAATCGAGAGTACACAAGTTAACTCATTTGGGTCG 480
consensus_5551#1      AAGAACCTTGACTAGGTTGTCAGGGTAATCGAGAGTA----------------------- 420
                      *************************************                       

consensus_5551#0      TGATTAAAAAACAATTGTATGGACATAGTTATTGATAGTAAATTCATTGGACTGTAGCGG 540
consensus_5551#1      ------------------------------------------------------------
                                                                                  

consensus_5551#0      TTAATTTTATTTGCTGCAACTCAGCAACAAAAGCCAGTCTGGTA 584
consensus_5551#1      --------------------------------------------